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Oryza sativa
cluster # 14799 cluster # 14799       Sequences # 18       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14799#0 length = 977 sequences # 14  
consensus_14799#1 length = 492 sequences # 3  
consensus_14799#2 length = 215 sequences # 1  

consensusID : consensus_14799#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 977
fasta sequence
                              [CACACGCACCAAGAAAGCCAAGAACCGATCAGCTTTGGTGTTCGATCGATCAAGACGAGGCGGCGGCGGGGCTGATCGAGATGGCGGCGCCGCCGGCGA-G-GTCGGTGAGCGTGGCGGACAGGGCGCTGCGAGGGGTGGCGGACCTGATCAAGCTGCTGCCGAGCGGCACGGTGTTCCTCTTCCAGTTCCTCAGCCCGCTCGTCACCAACAACGGCCACTGCGCCGCCGCCTACAGCAGGGTCCTCAGCGCCGCCCTCCTCGCGCTCTGCGG-CGCCTTCTGCGCCTTCTCCTCCTTCACCGACAGCTACGTCGGCTCCGACGGCCGCGTCTACTACGGCGTCGTCACCGCCAGGGGGCTCCGCACGTTCGCCGCCGACCCGGACGCCGCCGCGCGGGACCTGTCCGGGTACAGGCTCCGCGCCGGGGACTTCGTCCACGCCGCGCTCTCGCTCCTCGTCTTCGCCACCATCGCCCTCCTCGACGCCGACACCGTGGCGTGCCTCTACCCGGCGCTCGAGGTCAGCGAGCGCACCATGATGGCCGTGCTCCCACCCGTCGTCGGCGGCGTCGCCAGCTACGCCTTCATGG-TGTTCCCC----AA-CAA--CC-GCCA-TGGCATCGGCTACCAGCCC--ACCC-GCG-CCA-CCGAGGACTTCGAGCACAAGCACTAG-ATCGTCGTCGACGACGACGAC-TAAATTATTAATTAATT-TGGGT-GTT-TTAATTAATTGATTTCGAATTCATCAAATCTTAATTTAAACATTTTAT-GTG-TGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGAT-TTGGAGACTCGAGTCAAAGTGTGAAGTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAGCTACCGCTGAACATAATAAAGTCTACAATTGTACTGTTTTTTTTTAAAAAAAAAAAAAAAGTGCTTCAACAGAAAAAAAAA]

[+] EMBL AK060059             [CACACGCACCAAGAAAGCCAAGAACCGATCAGCTTTGGTGTTCGATCGATCAAGACGAGGCGGCGGCGGGGCTGATCGAGATGGCGGCGCCGCCGGCGA G GTCGGTGAGCGTGGCGGACAGGGCGCTGCGAGGGGTGGCGGACCTGATCAAGCTGCTGCCGAGCGGCACGGTGTTCCTCTTCCAGTTCCTCAGCCCGCTCGTCACCAACAACGGCCACTGCGCCGCCGCCTACAGCAGGGTCCTCAGCGCCGCCCTCCTCGCGCTCTGCGG CGCCTTCTGCGCCTTCTCCTCCTTCACCGACAGCTACGTCGGCTCCGACGGCCGCGTCTACTACGGCGTCGTCACCGCCAGGGGGCTCCGCACGTTCGCCGCCGACCCGGACGCCGCCGCGCGGGACCTGTCCGGGTACAGGCTCCGCGCCGGGGACTTCGTCCACGCCGCGCTCTCGCTCCTCGTCTTCGCCACCATCGCCCTCCTCGACGCCGACACCGTGGCGTGCCTCTACCCGGCGCTCGAGGTCAGCGAGCGCACCATGATGGCCGTGCTCCCACCCGTCGTCGGCGGCGTCGCCAGCTACGCCTTCATGG TGTTCCCC    AA CAA  CC GCCA TGGCATCGGCTACCAGCCC  ACCC GCG CCA CCGAGGACTTCGAGCACAAGCACTAG ATCGTCGTCGACGACGACGAC TAAATTATTAATTAATT TGGGT GTT TTAATTAATTGATTTCGAATTCATCAAATCTTAATTTAAACATTTTAT GTG TGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGAT TTGGAGACTCGAGTCAAAGTGTGAAGTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAGCTACCGCTGAACATAATAAAGTCTACAATTGTACT                                              ]
[+] EMBL OSR06531A            [                   AAGAACCGATCAGCTTTGGTGTTCGATCGATCAAGACGAGGNGGCGGCGGGGCTGATCGAGATGGCGGCGCCGCCGGCGANG GTCGGTGAGCNTGGCGGACAGGGCGCTGCGAGGGGTGGCGGACCTGATCAAGCTGCTGCCGAGCGGCACGGTGTTCCTCTTCCAGTTCCTCAGCCCGATCGTCACCAACAACGGCCACTGCGCCGCCGCCTACAGCAGGGTCCTCAGCGCCGCCCTCCTCGCGCTCTGCGGACGCCTTCTGCGCCTTCTCCTCCTTCACCGACAGCTACGTCGGCTCCGACGGACGCGTCTACTACGGCGTCGTCACCGCCAGGGGGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSS1253A             [                   AAGAACCGATCAGCTTTGGTGTTCGATCGATCAAGACGAGGCGGCGGCGGGGCTGATCGAGATGGCGGCGCCGCCGGCGA GNGTCGGTGAGCGTGGCGGACAGGGCGCTGCGAGGGGTGGCGGACCTGATCAAGCTGCTGCCGAGCGGCACGGTGTTCCTCTTCCAGTTCCTCAGCCCGCTCGTCACCAACAACGGCCACTGCGCCGCCGCCTACAGCAGGGTCCTCAGCGCCGCCCTCCTCGCGCTCTG GG CGCCTTCTGCGGCTTCTCCTCCTTCACCGACAGCTACGTCGGCTTCGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA755010             [                      AACCGATCAGCTTTGGTGTTCGATCGATCAAGACGAGGCGGCGGCGGGGCTGATCGAGATGGCGGCGCCGCCGGCGA G GTCGGTGAGCGTGGCGGACAGGGCGCTGCGAGGGGTGGCGGACCTGATCAAGCTGCTGCCGAGCGGCACGGTGTTCCTCTTCCAGTTCCTCAGCCCGCTCGTCACCAACAACGGCCACTGCGCCGCCGCCTACAGCAGGGTCCTCAGCGCCGCCCTCCTCGCGCTCTGCGG CGCCTTCTGCGCCTTCTCCTCCTTCACCGACAGCTACGTCGGCTCCGACGGCCGCGTCTACTACGGCGTCGTCACCGCCAGGGGGCTCCGCACGTTCGCCGCCGACCCGGACGCCGCCGCGCGGGACCTGTCCGGGTACAGGCTCCGCGCCGGGGACTTCGTCCACGCCGCGCTCTCGCTCCTCGTCTTCGCCACCATCGCCCTCCTCGACGCCGACACCGTGGCGTGCCTCTACCCGGCGCTCGAGGTCAGCGAGCGCACCATGATGGCCGTGCTCCCACCCGTCGTCGGCGGCGTCGCCAGCTACGCCTTCATGG TGTTCCCC    AA CAA  CC GCCA TGGCATCGGCTACCAGCCC  A                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSS14514A            [                           ATCAGCTTTGGTGTTCGATCGATCAAGACGAGGNGGCGGCGGGGCTGATCGAGATGGCGGCGCCGCCGGCGA GAGTCGGTGAGCNTGGCGGACAGGGCGCTGCGAGGGGTGGCGGACCTGATCAAGCTGCTGCCGAGCGGCACGGTGTTCCTNTTCCAGTTCCTCAGCCCGCTCGTCACCAACAACGGCCACTGCGCCGCCGCCTACAGCAGGGTCCTCAGCGCCGCCCTCCTCGCGCTCTGCGG CGCCTTCTGCGCCTTCTNCTCCTTCACCGACAGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSS14721A            [                                  TTGGTGTTCGATCGATCAAGACGAGGCGGCGGCGGGGCTGATCGAGATGGCGGCGCCGCCGGCGATG GTCGGTGAGCGTGGCGGACAGGGCGCTGCGAGGGGTGGCGGACCTGATCAAGCTGCTGCCGAGCGGCACGGTGTTCCTCTTCCAGTTCCTCAGCCCGCTCGTCACCAACAACGGCCACTGCGCCGCCGCCTACAGCAGGGTCCTCAGCGCCGNCCTCCTCGCGCTCTG GG CGCCTTCTGCGCCTTCTCCTCCTTCACCGACAGCTACGTNGGCTCCGACGGCCGCGTCTACTACGGCGTCGTCACCGCCA GGGGCTCCGCACGTTCGCCGCCGACCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSS13905A            [                                  TTGGTGTTCGATCGATCAANACGAGGCGGCGGCGGGGCTGATCGANATGGCGGCGCCGCCGGCNA G GTCGGTGAGCGTGGCGGACAGGGCGCTGCGAGGGGTGGCGGACCTGATCAANCTGCTGCCGAGCGGCACGGTGTTCCTCTTCCAGTTCCTCAGCCCGCTCGTCACCAACAACGGCCACTGCGCCGCCGCCTACAGCAGGGTCCTCAGCGCCGCCCTCCTCGNGCTCTGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSR01491A            [                                                                                                                                                                                                                                                                                                                                                                                                                CCGGTACGGGTACAGGCTCCGCGCCGGGGACTTCGTCCACGCCGCGCTCTCGCTCCTCGTCTTCGCCACCATCGCCCTCCTCGACGCCGACACCGTGGCGTGCCTCTACCCGGCGCTCGAGGTCAGCGAGCGCACCATGATGGCCGTGCTCCCACCCGTCGTCGGCGGCGTCG CAGCTACGCCTTCATGG TGTTCCCC    AA CAA  CC GCCA TGGCATCGGCTACCAGCCC  ACCC GCG CCA CCGAGGACTTCGAGCACAAGCACTAG ATCGTNGTCGA GA GA GACTTAAATTATTAATTAATT TGGGT GTT TTAATTAATTGATTTCG ATTCATCAAATCTTAATTTAAACATTTTAT                                                                                                                                                                                                                                ]
[+] EMBL AU101597             [                                                                                                                                                                                                                                                                                                                                                                                                                            CAGGCTCCGCGCCGGGGACTTCGTCCACGCCGCGCTCTCGCTCCTCGTCTTCGCCACCATCGCCCTCCTCGACGCCGACACCGTGGCGTGCCTCTACCCGGCGCTCGAGGTCAGCGAGCGCACCATGATGGCCGTGCTCCCACCCGTCGTCGGCGGCGTCGCCAGCTACGCCTTCATGG TGTTCCCC    AA CAA  CC GCCA TGGCATCGGCTACCAGCCC  ACCC GCG CCA CCGAGGACTTCGAGCACAAGCACTAG ATCGTCGTCGACGACGACGAC TAAATTATTAATTAATT TGGGT GTT TTAATTAATTGATTTCGAATTCATCAAATCTTAATTTAAACATTTTAT GTG TGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGAT TTGGAGACTCGAGTCAAAGTGTGAAGTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAGCTACCGCTGAACATAATAAAGTCTACAATTGTACTGTTTTTTTTTAAAAA                               ]
[+] EMBL AU096627             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTCGTCTTCGCCACCATCGCCCTCCTCGACGCCGACACCGTGGCGTGCCTCTACCCGGCGCTCGAGGTCAGCGAGCGCACCATGATGGCCGTGCTCCCACCCGTCGTCGGCGGCGTCGCCAG TACGCCTTCATGG TGTTCCCC    AA CAA  CC GCCA TGGCATCGGCTACCAGCCC  ACCC GCG CCA CCGAGGACTTCGAGCACAAGCACTAGAATC TCGTCGACGACGACGAC TAAATTATTAATTAATT TGGGT GTT TTAATTAATTGATTTCGAATTCATCAAATCTTAATTTAAACATTTTAT GTG TGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGAT TTGGAGACTCGAGTCAAAGTGTGAAGTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAGCTACCGCTGAACATAATAAAGTCTACAATTGTACTGTTTTTTTTTAAAAAAAAAAAA                        ]
[+] EMBL AU164596             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCGTGCCTCTACCCGGCGCTCGAGGTCAGCGAGCGCACCATGATGGCCGTGCTCCCACCCGTCGTCGACGGCGTCGCCAGCTACGCCTTCATGG TGTTCCCC    AA CAA  CC GCCA TGGCATCGGCTACCAGCCC  ACCC GCG CCA CCNAGGACTTCGAGCACAAGCACTAG ATCGTCGTCGACGACGACGAC TAAATTATTAATTAATT TGGGT GTT TTAATTAATTGATTTCGAATTCATCAAATCTTAATTTAAACATTTTAT GTG TGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGAT TTGGAGACTCGAGTCAAAGTGTGAAGTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAGCTACCGCTGAACATAATAAAGTCTACAATTGTACTGTTTTTTTTTAAAAAAAAAAAAAAA                     ]
[+] EMBL AU097121             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tccaatTGGTTGTTCCCCCCATAATCAANCCCGGCCATTGNCATCGGCTACCAGCCCCNACCCTGCGCCCACCCGAGGACTTCGAGCACAAGCACTAG AT    GTCGACGACGACGAC TAAATTATTAATTAATT TGGGT GTT TTAATTAATTGATTTCGAATTCATCAAATCTTAATTTAAACATTTTAT GTG TGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGAT TTGGAGACTCGAGTCAAAGTGTGAAGTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAG TACCGCTGAACATAATAAAGTCTACAATTGTACTGTTTTTTTTTAAAAA                               ]
[+] EMBL AU164640             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             A CAA  CC GCCA TGGCATCGGCTACCAGCCC  ACCC GCG CCA CCGAGGACTTCGAGCACAAGCACTAG ATCGTCGTCGACGACGACGAC TAAATTATTAATTAATT TGGGT GTT TTAATTAATTGATTTCGAATTCATCAAATCTTAATTTAAACATTTTAT GTG TGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGAT TTGGAGACTCGAGTCAAAGTGTGAAGTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAGCTACCGCTGAACATAATAAAGTCTACAATTGTACTGTTTTTTTTTAAAAAAAAATTCACTGTGCTTCAACAGAAAAAAAAA]
[+] EMBL AU161611             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACGAC TAAATTATTAATTAATTNTGGGTNGTTCTTAATTAATTGATTCCGAATTCATCAAATCTTAATTTAAACATTTTATNGTGTTGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGATCTTGGAGACTCGAGTCAAAGTGTGAAGTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAG TACCGCTGAACATAATAAAGTCTACAATTGTACTGTTTTTTTTTAAAAAAAAAAA                         ]


>consensus_14799#0 CACACGCACCAAGAAAGCCAAGAACCGATCAGCTTTGGTGTTCGATCGATCAAGACGAGG CGGCGGCGGGGCTGATCGAGATGGCGGCGCCGCCGGCGAGGTCGGTGAGCGTGGCGGACA GGGCGCTGCGAGGGGTGGCGGACCTGATCAAGCTGCTGCCGAGCGGCACGGTGTTCCTCT TCCAGTTCCTCAGCCCGCTCGTCACCAACAACGGCCACTGCGCCGCCGCCTACAGCAGGG TCCTCAGCGCCGCCCTCCTCGCGCTCTGCGGCGCCTTCTGCGCCTTCTCCTCCTTCACCG ACAGCTACGTCGGCTCCGACGGCCGCGTCTACTACGGCGTCGTCACCGCCAGGGGGCTCC GCACGTTCGCCGCCGACCCGGACGCCGCCGCGCGGGACCTGTCCGGGTACAGGCTCCGCG CCGGGGACTTCGTCCACGCCGCGCTCTCGCTCCTCGTCTTCGCCACCATCGCCCTCCTCG ACGCCGACACCGTGGCGTGCCTCTACCCGGCGCTCGAGGTCAGCGAGCGCACCATGATGG CCGTGCTCCCACCCGTCGTCGGCGGCGTCGCCAGCTACGCCTTCATGGTGTTCCCCAACA ACCGCCATGGCATCGGCTACCAGCCCACCCGCGCCACCGAGGACTTCGAGCACAAGCACT AGATCGTCGTCGACGACGACGACTAAATTATTAATTAATTTGGGTGTTTTAATTAATTGA TTTCGAATTCATCAAATCTTAATTTAAACATTTTATGTGTGTGCGTGCGTGCGTGCGTGC GTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGATTTGGAGACTCGAGTCAAAGTGTGA AGTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAGCTAC CGCTGAACATAATAAAGTCTACAATTGTACTGTTTTTTTTTAAAAAAAAAAAAAAAGTGC TTCAACAGAAAAAAAAA



consensusID : consensus_14799#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 492
fasta sequence
                              [TCGTCTTCGCCACCATCGCCCTCCTCGACGCCGACACCGTGGCGTGCCTCTACCCGGCGCTCGAGGTCAGCGAGCGCACCATGATGGCCGTGCTCCCACCCGTCGTCGGCGGCGTCGCCAG-TACGCCTTCATGGTGTTCCCCAACAACCGCCATGGCATCGGCTACCAGCCCACCCGCGCCACCGAGGACTTCGAGCACAAGCACTAG-ATCGTCGTCGACGACGACGAC-TAAATTATTAATTAATTTGGGTGTTTTAATTAATTGATTTCGAATTCATCAAATCTTAATTTAAACATTTTATGTGTGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGATTTGGAGACTCGAGTCAAAGTGTGAAGTGGCTCTGTGTACATTTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAGCTACCGCTGAACATAATAAAGTCTACAATTGTACAAAAAAAAAAAAAAAA]

[+] EMBL AU096689             [TCGTCTTCGCCACCATCGCCCTCCTCGACGCCGACACCGTGGCGTGCCTCTACCCGGCGCTCGAGGTCAGCGAGCGCACCATGATGGCCGTGCTCCCACCCGTCGTCGGCGGCGTCGCCAG TACGCCTTCATGGTGTTCCCCAACAACCGCCATGGCATCGGCTACCAGCCCACCCGCGCCACCGAGGACTTCGAGCACAAGCACTAGAATC TCGTCGACGACGACGAC TAAATTATTAATTAATTTGGGTGTTTTAATTAATTGATTTCGAATTCATCAAATCTTAATTTAAACATTTTATGTGTGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGATTTGGAGACTCGAGTCAAAGTGTGAAGTGGCTCTGTGTACATTTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAGCTACCGCTGAACATAATAAAGTCTACAATTGTACAAAAAAAAAAAAAAAA]
[+] EMBL AU197950             [                                                 CTACCCGGCGCTCGAGGTCAGCGAGCGCACCATGATGGCCGTGCTCCCACCCGTCGTCGGCGGCGTCGCCAGCTACGCCTTCATGGTGTTCCCCAACAACCGCCATGGCATCGGCTACCAGCCCACCCGCGCCACCGAGGACTTCGAGCACAAGCACTAG ATCGTCGTCGACGACGACGAC TAAATTATTAATTAATTTGGGTGTTTTAATTAATTGATTTCGAATTCATCAAATCTTAATTTAAACATTTTATGTGTGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGATTTGGAGACTCGAGTCAAAGTGTGAAGTGGCTCTGTGTACATTTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAGCTACCGCTGAACATAATAAAGTCTACAATTGT CAAAAAAAAAAAAAAAA]
[+] EMBL OSR08622A            [                                                                                                                                               AACAACCGCCATGGCATCGGCTACCAGCCCACCCGCGCCACCGAGGACTTCGAGCACAAGCACTAG ATCGTCGTCGACGACGA GACNTAAATTATTAATTAATTTGGGTGTTTTAATTAATTGATTTCGAATTCATCAAATCTTAATTTAAACATTTTAT                                                                                                                                                                                              ]


>consensus_14799#1 TCGTCTTCGCCACCATCGCCCTCCTCGACGCCGACACCGTGGCGTGCCTCTACCCGGCGC TCGAGGTCAGCGAGCGCACCATGATGGCCGTGCTCCCACCCGTCGTCGGCGGCGTCGCCA GTACGCCTTCATGGTGTTCCCCAACAACCGCCATGGCATCGGCTACCAGCCCACCCGCGC CACCGAGGACTTCGAGCACAAGCACTAGATCGTCGTCGACGACGACGACTAAATTATTAA TTAATTTGGGTGTTTTAATTAATTGATTTCGAATTCATCAAATCTTAATTTAAACATTTT ATGTGTGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGG ATTTGGAGACTCGAGTCAAAGTGTGAAGTGGCTCTGTGTACATTTGTGTTCGATTGTTTT TCATGTAATTTGATACTAGGAGCTACCGCTGAACATAATAAAGTCTACAATTGTACAAAA AAAAAAAAAAAA



consensusID : consensus_14799#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence
                              [CGAATTCGGCACGAGTCAAATCTTAATTTAAACATTTTATGTGTGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGATTTGGAGACTCGANTCAAAGTGTGAANTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTNGATACTAGGAGCTACCGCTGAACATAATAAAGTCTACNATTGTACT]

[+] EMBL BE228852             [CGAATTCGGCACGAGTCAAATCTTAATTTAAACATTTTATGTGTGTGCGTGCGTGCGTGCGTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGATTTGGAGACTCGANTCAAAGTGTGAANTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTNGATACTAGGAGCTACCGCTGAACATAATAAAGTCTACNATTGTACT]


>consensus_14799#2 CGAATTCGGCACGAGTCAAATCTTAATTTAAACATTTTATGTGTGTGCGTGCGTGCGTGC GTGCGTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGATTTGGAGACTCGANTCAAAGT GTGAANTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTNGATACTAGGAG CTACCGCTGAACATAATAAAGTCTACNATTGTACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14799#0      CACACGCACCAAGAAAGCCAAGAACCGATCAGCTTTGGTGTTCGATCGATCAAGACGAGG 60
consensus_14799#1      ------------------------------------------------------------
consensus_14799#2      ------------------------------------------------------------
                                                                                   

consensus_14799#0      CGGCGGCGGGGCTGATCGAGATGGCGGCGCCGCCGGCGAGGTCGGTGAGCGTGGCGGACA 120
consensus_14799#1      ------------------------------------------------------------
consensus_14799#2      ------------------------------------------------------------
                                                                                   

consensus_14799#0      GGGCGCTGCGAGGGGTGGCGGACCTGATCAAGCTGCTGCCGAGCGGCACGGTGTTCCTCT 180
consensus_14799#1      ------------------------------------------------------------
consensus_14799#2      ------------------------------------------------------------
                                                                                   

consensus_14799#0      TCCAGTTCCTCAGCCCGCTCGTCACCAACAACGGCCACTGCGCCGCCGCCTACAGCAGGG 240
consensus_14799#1      ------------------------------------------------------------
consensus_14799#2      ------------------------------------------------------------
                                                                                   

consensus_14799#0      TCCTCAGCGCCGCCCTCCTCGCGCTCTGCGGCGCCTTCTGCGCCTTCTCCTCCTTCACCG 300
consensus_14799#1      ------------------------------------------------------------
consensus_14799#2      ------------------------------------------------------------
                                                                                   

consensus_14799#0      ACAGCTACGTCGGCTCCGACGGCCGCGTCTACTACGGCGTCGTCACCGCCAGGGGGCTCC 360
consensus_14799#1      ------------------------------------------------------------
consensus_14799#2      ------------------------------------------------------------
                                                                                   

consensus_14799#0      GCACGTTCGCCGCCGACCCGGACGCCGCCGCGCGGGACCTGTCCGGGTACAGGCTCCGCG 420
consensus_14799#1      ------------------------------------------------------------
consensus_14799#2      ------------------------------------------------------------
                                                                                   

consensus_14799#0      CCGGGGACTTCGTCCACGCCGCGCTCTCGCTCCTCGTCTTCGCCACCATCGCCCTCCTCG 480
consensus_14799#1      ---------------------------------TCGTCTTCGCCACCATCGCCCTCCTCG 27
consensus_14799#2      ------------------------------------------------------------
                                                                                   

consensus_14799#0      ACGCCGACACCGTGGCGTGCCTCTACCCGGCGCTCGAGGTCAGCGAGCGCACCATGATGG 540
consensus_14799#1      ACGCCGACACCGTGGCGTGCCTCTACCCGGCGCTCGAGGTCAGCGAGCGCACCATGATGG 87
consensus_14799#2      ------------------------------------------------------------
                                                                                   

consensus_14799#0      CCGTGCTCCCACCCGTCGTCGGCGGCGTCGCCAGCTACGCCTTCATGGTGTTCCCCAACA 600
consensus_14799#1      CCGTGCTCCCACCCGTCGTCGGCGGCGTCGCCAG-TACGCCTTCATGGTGTTCCCCAACA 146
consensus_14799#2      ------------------------------------------------------------
                                                                                   

consensus_14799#0      ACCGCCATGGCATCGGCTACCAGCCCACCCGCGCCACCGAGGACTTCGAGCACAAGCACT 660
consensus_14799#1      ACCGCCATGGCATCGGCTACCAGCCCACCCGCGCCACCGAGGACTTCGAGCACAAGCACT 206
consensus_14799#2      ------------------------------------------------------------
                                                                                   

consensus_14799#0      AGATCGTCGTCGACGACGACGACTAAATTATTAATTAATTTGGGTGTTTTAATTAATTGA 720
consensus_14799#1      AGATCGTCGTCGACGACGACGACTAAATTATTAATTAATTTGGGTGTTTTAATTAATTGA 266
consensus_14799#2      --------------------------------------------------------CGAA 4
                                                                                  *

consensus_14799#0      TTTCGAATTCATCAAATCTTAATTTAAACATTTTATGTGTGTGCGTGCGTGCGTGCGTGC 780
consensus_14799#1      TTTCGAATTCATCAAATCTTAATTTAAACATTTTATGTGTGTGCGTGCGTGCGTGCGTGC 326
consensus_14799#2      TTCGGCACGAGTCAAATCTTAATTTAAACATTTTATGTGTGTGCGTGCGTGCGTGCGTGC 64
                       **  * *    *************************************************

consensus_14799#0      GTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGATTTGGAGACTCGAGTCAAAGTGTGA 840
consensus_14799#1      GTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGATTTGGAGACTCGAGTCAAAGTGTGA 386
consensus_14799#2      GTGTGTTTTGCAATGTCAGGGTTTGGTCCTTTGGATTTGGAGACTCGANTCAAAGTGTGA 124
                       ************************************************ ***********

consensus_14799#0      AGTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAGCTAC 900
consensus_14799#1      AGTGGCTCTGTGTACATTTGTGTTCGATTGTTTTTCATGTAATTTGATACTAGGAGCTAC 446
consensus_14799#2      ANTGGCTCTGTGTACATGTGTGTTCGATTGTTTTTCATGTAATTNGATACTAGGAGCTAC 184
                       * *************** ************************** ***************

consensus_14799#0      CGCTGAACATAATAAAGTCTACAATTGTACTGTTTTTTTTTAAAAAAAAAAAAAAAGTGC 960
consensus_14799#1      CGCTGAACATAATAAAGTCTACAATTGTAC-----------AAAAAAAAAAAAAAAA--- 492
consensus_14799#2      CGCTGAACATAATAAAGTCTACNATTGTACT----------------------------- 215
                       ********************** *******                              

consensus_14799#0      TTCAACAGAAAAAAAAA 977
consensus_14799#1      -----------------
consensus_14799#2      -----------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)