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Oryza sativa
cluster # 1481 cluster # 1481       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1481#0 length = 1378 sequences # 2  

consensusID : consensus_1481#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1378
fasta sequence
                              [CAGCTCTTATTGCCTACAGCAGCATGAATGGACGGTATTTTGCTGGGAAGCAGATAACATGTGAATTTGTTGCTGTGACAAGATGGAAGGTTGCCATATGTGGTGAATACATGAGGTCAAGATTCAAGACATGTTCACGTGGAATCGCTTGTAATTTTATTCATTGCTTTCGCAACCCTGGAGGAGATTATGAGTGGGCTGATTGGGATAATCCTCCTCCTAGATACTGGATTAGGAAGATGGCTGCTCTTTTTGGTCCCTCGGATGATTCTATCTATGGCAAGCCAAGCGACACCCCACATTTAGAGCGCTCACAGAGTTCAGACAGGAGGAGACCGAGAAGTTCTGATCCTAGGTACACACCAAGCAGAACAAGGGATGAAGATGCACATAAACAGCACTCGTCCAGAGATTATTCACATTCGAAGCATGAACGCAGCTGCCATACTGAGCACAGACGAGACAGAAAAGAATCATCTGCATCAGATAAGCACCGACATCGAGAGATTAAAGATAAGACCAGCAAATACTCCTCTAACATGGAAAGTGAAAGAGAGTCCCACAAGTACATGCGTGAAGAAAAACATAGGATTGACCATGGAAATGGAGGTAAAGGAGACCATGGTAAAGTTAGGTCGAGGAAGAACAGATCTGAACGCCAAGAAAG-TTTGGAGCCT-GGATCTTCTGGCCGGTCTTC-GGAC-TTCATCGATCAAGACACCACCGAGAGTCCTTCAGGCAGCAAGTCCACTGGCAGGCATCACAAGAAGACCAGGAGGCAATCCTTAGAAGAGCACAGCACCAGAAGGAGCTCAAGGCATCGGGACATGGAAGATGATGGAAGAGGACAGTCTGTAGCTGTAAAACGCAAGGATCACCATGATACATCGGATGATAGATGGGTAGCAACAAACAGTGATGTTGATTCAGACTTGGAGACTCAATACCAGAGGTCAAGTAGTGAAGGCAGCAAGCTGGGAATGAAATATCATGCTCGATCAGATTCAGAAACTGGGTACGGAAGGTCAAGAAGTGGAACAACCAAGAGCCGTAGGGAAAGGAAGCGTCAGAGTGGAAACGGTGAGCGCAGCGACACTTTAGAGGTTACTTCAGATTCAGACACCAGAGATATGAGCTCTGATGCATGGAGGAGCCGATCGAGAAGCAGTGACGAGAATCTCTCAACGCACAGGTCAAGGAGAAAAAGAAGTCGCAGTAGTCATGATTCCTGATGCCATTGGCACGATTTCTTCGAAGCTTCTCATCATCTGAACACTACAGTTGCCAACTTTGGTTTGTGGATTATTTAGCTAGCTTATGTAATAGCATGTTGCAAGGCCAAATATATTTTTGGTTCGTCTTTTACCTAAGAAGAGTAATT]

[+] EMBL AK112106             [CAGCTCTTATTGCCTACAGCAGCATGAATGGACGGTATTTTGCTGGGAAGCAGATAACATGTGAATTTGTTGCTGTGACAAGATGGAAGGTTGCCATATGTGGTGAATACATGAGGTCAAGATTCAAGACATGTTCACGTGGAATCGCTTGTAATTTTATTCATTGCTTTCGCAACCCTGGAGGAGATTATGAGTGGGCTGATTGGGATAATCCTCCTCCTAGATACTGGATTAGGAAGATGGCTGCTCTTTTTGGTCCCTCGGATGATTCTATCTATGGCAAGCCAAGCGACACCCCACATTTAGAGCGCTCACAGAGTTCAGACAGGAGGAGACCGAGAAGTTCTGATCCTAGGTACACACCAAGCAGAACAAGGGATGAAGATGCACATAAACAGCACTCGTCCAGAGATTATTCACATTCGAAGCATGAACGCAGCTGCCATACTGAGCACAGACGAGACAGAAAAGAATCATCTGCATCAGATAAGCACCGACATCGAGAGATTAAAGATAAGACCAGCAAATACTCCTCTAACATGGAAAGTGAAAGAGAGTCCCACAAGTACATGCGTGAAGAAAAACATAGGATTGACCATGGAAATGGAGGTAAAGGAGACCATGGTAAAGTTAGGTCGAGGAAGAACAGATCTGAACGCCAAGAAAG TTTGGAGCCT GGATCTTCTGGCCGGTCTTC GGAC TTCATCGATCAAGACACCACCGAGAGTCCTTCAGGCAGCAAGTCCACTGGCAGGCATCACAAGAAGACCAGGAGGCAATCCTTAGAAGAGCACAGCACCAGAAGGAGCTCAAGGCATCGGGACATGGAAGATGATGGAAGAGGACAGTCTGTAGCTGTAAAACGCAAGGATCACCATGATACATCGGATGATAGATGGGTAGCAACAAACAGTGATGTTGATTCAGACTTGGAGACTCAATACCAGAGGTCAAGTAGTGAAGGCAGCAAGCTGGGAATGAAATATCATGCTCGATCAGATTCAGAAACTGGGTACGGAAGGTCAAGAAGTGGAACAACCAAGAGCCGTAGGGAAAGGAAGCGTCAGAGTGGAAACGGTGAGCGCAGCGACACTTTAGAGGTTACTTCAGATTCAGACACCAGAGATATGAGCTCTGATGCATGGAGGAGCCGATCGAGAAGCAGTGACGAGAATCTCTCAACGCACAGGTCAAGGAGAAAAAGAAGTCGCAGTAGTCATGATTCCTGATGCCATTGGCACGATTTCTTCGAAGCTTCTCATCATCTGAACACTACAGTTGCCAACTTTGGTTTGTGGATTATTTAGCTAGCTTATGTAATAGCATGTTGCAAGGCCAAATATATTTTTGGTTCGTCTTTTACCTAAGAAGAGTAATT]
[+] EMBL C26264               [                                                                                                                                                                                                                                                                                                                                                    AAGTTCTGATCCTAGGTACACACCAAGCAGAACAAGGGATGAAGATGCACATAAACAGCACTCGTCCAGAGATTATTCACATTCGAAGCATGAACGCAGCAGCCATACTGAGCACAGACGAGACAGAAAAGAATCATCTGCATCAGATAAGCACCGACATCGAGAGATTAAAGATAAGACCAGCAAATACTCCTCTAACATGGAAAGTGAAAGAGAGTCCCACAAGTACATGCGTGAAGAAAAACATAGGATTGACCATGGAAATGGAGGTAAAGGAGACCATGGTAAAGTTAGGTCGAGGAAGACCAGATCTGAACGCCAAGAAAGTTTTGGAGCCTGGGNTCTTCTTGCCGGTCTTCGGGNCTTTCATCGATCCAGgnc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_1481#0 CAGCTCTTATTGCCTACAGCAGCATGAATGGACGGTATTTTGCTGGGAAGCAGATAACAT GTGAATTTGTTGCTGTGACAAGATGGAAGGTTGCCATATGTGGTGAATACATGAGGTCAA GATTCAAGACATGTTCACGTGGAATCGCTTGTAATTTTATTCATTGCTTTCGCAACCCTG GAGGAGATTATGAGTGGGCTGATTGGGATAATCCTCCTCCTAGATACTGGATTAGGAAGA TGGCTGCTCTTTTTGGTCCCTCGGATGATTCTATCTATGGCAAGCCAAGCGACACCCCAC ATTTAGAGCGCTCACAGAGTTCAGACAGGAGGAGACCGAGAAGTTCTGATCCTAGGTACA CACCAAGCAGAACAAGGGATGAAGATGCACATAAACAGCACTCGTCCAGAGATTATTCAC ATTCGAAGCATGAACGCAGCTGCCATACTGAGCACAGACGAGACAGAAAAGAATCATCTG CATCAGATAAGCACCGACATCGAGAGATTAAAGATAAGACCAGCAAATACTCCTCTAACA TGGAAAGTGAAAGAGAGTCCCACAAGTACATGCGTGAAGAAAAACATAGGATTGACCATG GAAATGGAGGTAAAGGAGACCATGGTAAAGTTAGGTCGAGGAAGAACAGATCTGAACGCC AAGAAAGTTTGGAGCCTGGATCTTCTGGCCGGTCTTCGGACTTCATCGATCAAGACACCA CCGAGAGTCCTTCAGGCAGCAAGTCCACTGGCAGGCATCACAAGAAGACCAGGAGGCAAT CCTTAGAAGAGCACAGCACCAGAAGGAGCTCAAGGCATCGGGACATGGAAGATGATGGAA GAGGACAGTCTGTAGCTGTAAAACGCAAGGATCACCATGATACATCGGATGATAGATGGG TAGCAACAAACAGTGATGTTGATTCAGACTTGGAGACTCAATACCAGAGGTCAAGTAGTG AAGGCAGCAAGCTGGGAATGAAATATCATGCTCGATCAGATTCAGAAACTGGGTACGGAA GGTCAAGAAGTGGAACAACCAAGAGCCGTAGGGAAAGGAAGCGTCAGAGTGGAAACGGTG AGCGCAGCGACACTTTAGAGGTTACTTCAGATTCAGACACCAGAGATATGAGCTCTGATG CATGGAGGAGCCGATCGAGAAGCAGTGACGAGAATCTCTCAACGCACAGGTCAAGGAGAA AAAGAAGTCGCAGTAGTCATGATTCCTGATGCCATTGGCACGATTTCTTCGAAGCTTCTC ATCATCTGAACACTACAGTTGCCAACTTTGGTTTGTGGATTATTTAGCTAGCTTATGTAA TAGCATGTTGCAAGGCCAAATATATTTTTGGTTCGTCTTTTACCTAAGAAGAGTAATT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)