cluster # 14818

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Oryza sativa
cluster # 14818 cluster # 14818 Sequences # 18 consensus # 7

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14818#0 length = 794 sequences # 2
consensus_14818#1 length = 712 sequences # 11
consensus_14818#2 length = 436 sequences # 1

consensus_14818#3 length = 366 sequences # 1
consensus_14818#4 length = 197 sequences # 1
consensus_14818#5 length = 148 sequences # 1
consensus_14818#6 length = 139 sequences # 1

consensusID : consensus_14818#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 794
fasta sequence

                              [CCGCCACCTCCTCCCCCTCTCCACACACTCTTCTTCTCCACTCCTCCGCCGCTCGCCTCGCCGCGCGCCGCTTATATACCCGCGTCTCTGCGCTCATCGATTCATCACCCAGATCGCAATCCAACCACCGCAACCAATTCGCCGGAGAAAGTTGTGAATACCGACCTACCGGCGGCGAAGATCGATGATGTACATGCGCGCGACGCA-CCGGGACGAGGAGGGGAAGAAGGTGACGGAGAAGGTGGCGGTGCCGGAGACGC-GGCACCC-GGACACGGCCAGGCACTTCGAGCGGAAGCTGGACCAGCAGGGGCTCCACCGCATGGAGCGCCACCCGGCGAACGGCTCCCGCGGCATCGGCGCGCCGCCGCCCAAGTCCGGCCGCGGCGGCAAGTTCACCTGGGAGGGCCCCGACAGCATCGTCGACAGCCAGCTCGATCCCCTCCCGGCCGCCATCGACCGCAACGACCCCAACTACGAGGAGG-AGGAAGGCGACCACGAGCGCGAGGCCGACGTCGTCGGCGAGGTGGAGGTCGCCAAGGTCGCCGGCGACGCCAGGGATGGTGTCGCCAGGGTCGACGTCGTCGCGCCGCCGCAGCTGCACGAGAAACTGCAGCTGCAGCCGCAGTAGGGGCGCCCAGCCGCCATTTGAGTGGTGTTTTCGAAGTGTGTTTGTTACTTTGTTTGAGTGTTTATTTACGGTTTTGTATGCGTGTTATTTATGCCTCTGTATGAATAATAATCGAGCATCAAACTGAACTTGGATGAAAAAAAAAAAAAAAAAAAAACTCGAGAGT]

[+] EMBL AK063680             [CCGCCACCTCCTCCCCCTCTCCACACACTCTTCTTCTCCACTCCTCCGCCGCTCGCCTCGCCGCGCGCCGCTTATATACCCGCGTCTCTGCGCTCATCGATTCATCACCCAGATCGCAATCCAACCACCGCAACCAATTCGCCGGAGAAAGTTGTGAATACCGACCTACCGGCGGCGAAGATCGATGATGTACATGCGCGCGACGCA CCGGGACGAGGAGGGGAAGAAGGTGACGGAGAAGGTGGCGGTGCCGGAGACGC GGCACCC GGACACGGCCAGGCACTTCGAGCGGAAGCTGGACCAGCAGGGGCTCCACCGCATGGAGCGCCACCCGGCGAACGGCTCCCGCGGCATCGGCGCGCCGCCGCCCAAGTCCGGCCGCGGCGGCAAGTTCACCTGGGAGGGCCCCGACAGCATCGTCGACAGCCAGCTCGATCCCCTCCCGGCCGCCATCGACCGCAACGACCCCAACTACGAGGAGG AGGAAGGCGACCACGAGCGCGAGGCCGACGTCGTCGGCGAGGTGGAGGTCGCCAAGGTCGCCGGCGACGCCAGGGATGGTGTCGCCAGGGTCGACGTCGTCGCGCCGCCGCAGCTGCACGAGAAACTGCAGCTGCAGCCGCAGTAGGGGCGCCCAGCCGCCATTTGAGTGGTGTTTTCGAAGTGTGTTTGTTACTTTGTTTGAGTGTTTATTTACGGTTTTGTATGCGTGTTATTTATGCCTCTGTATGAATAATAATCGAGCATCAAACTG                                        ]
[-] EMBL BP432960             [                                                                          TATACCCGCGTCTCTGCGCTCATCGATTCATCACCCAGATCGCAATCCAACCACCGCAACCAATTCGCCGGAGAAAGTTGTGAATACCGACCTACCGGCGGCGAAGATCGATGATGTACATGCGCGCGACGCACCCGGGACGAGGAGGGGAAGAAGGTGACGGAYAAGGTGGCGGTGCCGGAGACGCGGGCACCCGGGACACGGCCAGGCACTTCGAYCGGAAGCTGGACCAGCAGGGGCTCCACCGCATGGAGCGCCACCCGGCGAACGGCTCCCGCGGCATCGGCGCGCCGCCGCCCAAGTCCGGCCGCGGCGGCAAGTTCACCTGGGAGGGCCCCGACAGCATCGTCGACAGCCAGCTCGATCCCCTCCCGGCCGCCATCGACCGCAACGACCCCAACTACGAGGAGGAAGGAAGGCGACCACGAGCGCGAGGCCGACGTCGRSSYKGWMGMGYAGGTCGCCAAGGTCGCCGGCGACGCCYGGYWTGGTGTCGCCAGGGTCGACGTCGTCGCGCCGCCGCAGCTGCACGAGAAACTGCAGCTGCAGCCGCAGTAGGGGCGCCCAGCCGCCATTTGAGTGGTGTTTTCGAAGTGTGTTTGTTACTTTGTTTGAGTGTTTATTTACGGTTTTGTATGCGTGTTATTTATGCCTCTGTATGAATAATAATCGAGCATCAAACTGAACTTGGATGAAAAAAAAAAAAAAAAAAAAACTCGAGAGT]




>consensus_14818#0
CCGCCACCTCCTCCCCCTCTCCACACACTCTTCTTCTCCACTCCTCCGCCGCTCGCCTCG
CCGCGCGCCGCTTATATACCCGCGTCTCTGCGCTCATCGATTCATCACCCAGATCGCAAT
CCAACCACCGCAACCAATTCGCCGGAGAAAGTTGTGAATACCGACCTACCGGCGGCGAAG
ATCGATGATGTACATGCGCGCGACGCACCGGGACGAGGAGGGGAAGAAGGTGACGGAGAA
GGTGGCGGTGCCGGAGACGCGGCACCCGGACACGGCCAGGCACTTCGAGCGGAAGCTGGA
CCAGCAGGGGCTCCACCGCATGGAGCGCCACCCGGCGAACGGCTCCCGCGGCATCGGCGC
GCCGCCGCCCAAGTCCGGCCGCGGCGGCAAGTTCACCTGGGAGGGCCCCGACAGCATCGT
CGACAGCCAGCTCGATCCCCTCCCGGCCGCCATCGACCGCAACGACCCCAACTACGAGGA
GGAGGAAGGCGACCACGAGCGCGAGGCCGACGTCGTCGGCGAGGTGGAGGTCGCCAAGGT
CGCCGGCGACGCCAGGGATGGTGTCGCCAGGGTCGACGTCGTCGCGCCGCCGCAGCTGCA
CGAGAAACTGCAGCTGCAGCCGCAGTAGGGGCGCCCAGCCGCCATTTGAGTGGTGTTTTC
GAAGTGTGTTTGTTACTTTGTTTGAGTGTTTATTTACGGTTTTGTATGCGTGTTATTTAT
GCCTCTGTATGAATAATAATCGAGCATCAAACTGAACTTGGATGAAAAAAAAAAAAAAAA
AAAAACTCGAGAGT

consensusID : consensus_14818#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 712
fasta sequence

                              [AGCGAGCGATCCGTCGCGCACCAGCTTAATCTACCAACCAG-TTCGCCGG-AGAATTCAGGTGAGGATATATGGC-GTAC-ATGCGGGTGACTCACCGGGACG-AGGA-GGGGAAGAAGGTGACGGAG-AAGGTGCCGATCCCGGAG-ACGCGGCGTCCCGACACCGCGAGG-CACTTCGAGCGGAAGCTGG-AGGAGCAAGGGTTCCACCGCCTGGAGCGCCACCCGGCGAACGGGCCCGCGCGGGCCGGCATCGGCGCGCCG-CGCCCAAGTCCGGCCGCGGCGGCAAGTTCACCTGGGAGGGGCCCGACGGCCCCGTCGAC-GCCCAACTCCAGCCCGCCCCGCCC-GCCGTCGA-TCCCAACGACCCCAACTACGACGAGGGCGACGGCGCCGGAGTCGACGAGGAGG-TTGCCAAGGAGGTCGTCATCGGCGAGGTGGAGGTCGCCAAGGTCGCCGAGGCCAGGGACGGCGT-CGACGTCGTCGCGCCGGCGCCGCTGCTCCAGCAAGAGCAGC-AGTAGTCGAGTCTCGCGCCGCGCCGCGCCCGCCATTAGCCATTTCGGAGCTGATGTCTAATGGTCGTTGTGCGTTGTGTGTGACTGCGTGTGTTTTGGGTTCTAAACTGCTATAATTACTAGTCTCCTCAGTCCTCAGTGGTTTGCATGCATGTAAAAAATCGTGTCTCGTTTAATCAATAACGGTAAACATGGATTAAAAAAAAAAAA]

[+] EMBL AU093681             [AGCNAGCGATCCGTCGCGCACCAGCTTAATCTACCAACCAG TTCGCCGG AGAATTCAGGTGAGGATATATNGC GTAC ATGCGGGTGACTCACCGGGACG AGGA GGGGAAGAAGGTNACGGAG AAGGTTCCGATCCCGGAG ANNCNGCGTCCCGACACTNCGAGG CACTTCGAGCNGAANTNGG AGGAGCAAGGGTTCCACCGCCTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU063342             [AGCGAGCGATCCGTCGCGCACCAGCTTAATCTACCAACCAG TTCGCCGG AGAATTCAGGTGAGGATATATGGC GTAC ATGCGGGTGACTCACCGGGACG AGGA GGGGAAGAAGGTGACGGAG AAGGTGCCGATCCCGGAG ACGCGGCGTCCCGACACCGCGAGG CACTTCGAGCGGAAG TGG AGGAGCAAGGGTTCCACCGCCTGGAGCGNCACCCGGCGAACGGGCCCGCGCGGG CGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU063321             [AGCGAGCGATCCGTCGCGCACCAGCTTAATCTACCAACCAG TTCGCCGG AGAATTCAGGTGAGGATATATGGC GTAC ATGCGGGTGACTCACCGGGACG AGGA GGGGAAGAAGGTGACGGAG AAGGTGCCGATCCCGGAG ACGCGGCGTCCCGACACCGCGAGG CACTTCGAGCGGAAGTTGG AGGAGCAAGGGTTCCACCGCCTGGAGCGCCACCCGGCGAACGGGCCCGCGCGGGCCGGCATCGGCGCGCCG CGCCCAAGTCCGGCCGCGGCGGCAAGTTCACCTGGAAGGGGCCCGACGG CCCGTCGAC GCCCAANTTCAGCCCGCCCCGCCC GCCGTCGA TTCCAACGACCCCAACTACGACGAGGGCGACGGCGCCGGAGTNGACGAGGAGGTTTNCAAAGAAGGTCGTNATCGGCG                                                                                                                                                                                                                                                                                                    ]
[+] EMBL C29155               [ GCGAGCGATCCGTCGCGCACCAGCTTAATCTACCAACCAG TTCGCCGG AGAATTCAGGTGAGGATATATGGC GTAC ATGCGGGTGACTCACCGGGACG AGGA GGGGAAGAAGGTGACGGAG AAGGTGCCGATCCCGGAG ACGCGGNGTCCCGACACCGCGAGG CACTTCGAGCGGAAG TGG AGGAGCAAGGGTTCCACCGCCTGGNGCGCCACCCGGNGAACGGGNCCGCGCGGGCGNGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL C28104               [  CGAGCGATCCGTCGCGCACCAGCTTAATCTACCAACCAG TTCGCCGG AGAATTCAGGTGAGGATATATGGC GTAC ATGCGGGTGACTCACCGGGACG AGGA GGGGAAGAAGGTGACGGAG AAGGTGCCGATCCCGGAG ACGCGGCGTCCCGACACCGCGAGG CACTTCGAGCGGAAGCTGG AGGAGCAAGGGTTCCACCGCCTGGAGCGCCACCCGGCGAACGGGCCCGCGCGGG CGGCATCGGNGCNCCG CGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL C29121               [gaCGAGCGATCCGTCGCGCACCAGCTTAATCTACCAACCAG TTCGCCGG AGAATTCAGGTGAGGATATATGGC GTAC ATGGGGGTGACTCACCGGGACG AGGA GGGGAAGAAGGTGACGGAG AAGGTGCCGATCCCGGAGAACGNGGCGTCCCGACANCGCGAGGNCACTTCGAGCGGAAGCTGGTAGGAGCAAGGGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSC975               [     GCGATCCGTCGCGCACCAGCTTAATCTACCAACCAG TTCGCCGG AGAATTCAGGTGAGGATATATGGC GTAC ATGCGGGTGACTCACCGGGACG AGGA GGGGAAGAAGGTGACGGAG AAGGTGCCGATCCCGGAG ACGCGGCGTCCCGACACCGCGAGG CACTTCGAGCGGAAGTTNG AGGAGCAAGGGTTCCACCGCCTGGAGCGCCACCCGGCGAACGGGCCCGCGCGGNCGGGCATCGGCGCGCCG CGNCCAAGTTCGGCCGCGGNGGCAAGTTCA CTGGGAGGGGCCCGACGG CCCTTCGAC GGCCAACTTCAGCCCGCCCCGNCC GGCGTTGATTCCCAACGACCCCAATTACGACGAG                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU101347             [                            ATCTACCAACCAGTTTCGCCGGAAGAATTCAGGTGAGGATATATGGCGGTACAATGCGGGTGACTCACCGGGACGAAGGAGGGGGAAGAAGGTGACGGAGAAAGGTGCCGATCCCGGAG ACGCGGCGTCCCGACACCGCGAGG CACTTCGAGCGGAAGCTGG AGGAGCAAGGGTTCCACCGCCTGGAGCGCCACCCGGCGAACGGGCCCGCGCGGGCCGGCATCGGCGCGCCGCCGCCCAAGTCCGGCCGCGGCGGCAAGTTCACCTGGGAGGGGCCCGACGGCCCCGTCGAC GCCCAACTCCAGCCCGCCCCGCCC GCCGTCGA TCCCAACGACCCCAACTACGACGAGGGCGACGGCGCCGGAGTCGACGAGGAGG TTGCCAAGGAGGTCGTCATCGGCGAGGTGGAGGTCGCCAAGGTCGCCGAGGCCAGGGACGGCGT CGACGTCGTCGCGCCGGCGCCGCTGCTCCAGCAAGAGCAGC AGTAGTCGAGTCTCGCGCCGCGCCGCGCCCGCCATTAGCCATTTCGGAGCTGATGTCTAATGGTCGTTGTGCGTTGTGTGTGACTGCGTGTGTTTTGGGTTCTAAACTGCTATAATTACTAGTCTCCTCAGTCCTCAGTGGTTTGCATGCATGTAAAAAATCGTGTCTCGTTTAATCAATAACGGTAAACATGGATTAACTGAAAAAAA]
[+] EMBL BI795948             [                                                                                                                                                                                           aCTGG AGGACCAA GGTTCCACCGCCTGGAGCGCCACCCGGCGAAC GGCCCGCACGGGCCGGCATCGGCGCGCCC CGCCCAAGTCC GCCAC GCGGCAAGTTCACCTGGGAGGGGCCCGACGGCCCCGTCGACAGCCCAGCTCCAGCCCGCCCCGCCCAGCCGTCGA TCCCAACGACCCCAACTACGACGAGGGCGACGGCGCCGGAGTCGACGAGGAGG TTGCCAAGGAGGTTGTCATCGGCGAGGTGGAGGTCGCCAAGGTCGCCGAGGCCAGGGACGGCGTCCGACGTCGTCGCGCCGGCGCCGCTGCTCCAGCAAGAGCAGCAAGTAGTCGAGTCTCGCGCCGCGCCGCGCCCGCCATTAGCCATTTCGGAGCTGATGTCTAATGGTCGTTGTGCGTTGTGTGTGACTGCGTGTGTTTTGGGTTCTAAACTGCTATAATTACTAGTCTCCTCAGTCCTCAGTGGTTTGCATGCATGTAAAAAATCGTGTCTCGTTTAATCAATAACGGTAAACATGGATTAAAAAAA     ]
[+] EMBL AU172393             [                                                                                                                                                                                                                                                                                             GGCAAGTTCACCTGGGAGGGGCCCGACGGCCCCGTCGAC GCCCAACTCCAGCCCGCCCCGCCC GCCGTCGA TCCCAACGACCCCAACTACGACGAGGGCGACGGCGCCGGAGTCGACGAGGAGG TTGCCAAGGAGGTCGTCATCGGCGAGGTGGAGGTCGCCAAGGTCGCCGAGGCCAGGGACGGCGT CGACGTCGTCGCGCCGGCGCCGCTGCTCCAGCAAGAGCAGC AGTAGTCGAGTCTCGCGCCGCGCCGCGCCCGCCATTAGCCATTTCGGAGCTGATGTCTAATGGTCGTTGTGCGTTGTGTGTGACTGCGTGTGTTTTGGGTTNTAAACTGCTATAATTACTAGTCTCCTCAGTCCTCAGTGGTTTGCATGCATGT AAAAATCGTGTCTCGTTTAATCAATAACGGTAAACATGGATTAAAAA       ]
[+] EMBL AU093682             [                                                                                                                                                                                                                                                                                                                                                                                                             GAGTCGACGAGNAGG TTGCCAAGGAGGTCGTCATCGGCGAGGTGGAGGTCGCCAAGGTCGCCNAGGCCAGGGNCGGCGT CGACGTCGTCGCGCCGGCGCCGCTGCTCCAGCAAGAGCAGC AGTAGTCGAGTCTCGCGCCGCNCCGCGCCCGCCATTAGCCATTTCGGAGCTGATGTCTAATGGTCGTTGTGCGTTGTGTGTGACTGCGTGTGTTTTGGGTTCTAAACTGCTATAATTACTAGTCTCCTCAGTCCTCAGTGGTTTGCATGCATGTAAAAAATCGTGTCTCGTTTAATCAATAACGGTAAACATGGATTAAAAAAA     ]




>consensus_14818#1
AGCGAGCGATCCGTCGCGCACCAGCTTAATCTACCAACCAGTTCGCCGGAGAATTCAGGT
GAGGATATATGGCGTACATGCGGGTGACTCACCGGGACGAGGAGGGGAAGAAGGTGACGG
AGAAGGTGCCGATCCCGGAGACGCGGCGTCCCGACACCGCGAGGCACTTCGAGCGGAAGC
TGGAGGAGCAAGGGTTCCACCGCCTGGAGCGCCACCCGGCGAACGGGCCCGCGCGGGCCG
GCATCGGCGCGCCGCGCCCAAGTCCGGCCGCGGCGGCAAGTTCACCTGGGAGGGGCCCGA
CGGCCCCGTCGACGCCCAACTCCAGCCCGCCCCGCCCGCCGTCGATCCCAACGACCCCAA
CTACGACGAGGGCGACGGCGCCGGAGTCGACGAGGAGGTTGCCAAGGAGGTCGTCATCGG
CGAGGTGGAGGTCGCCAAGGTCGCCGAGGCCAGGGACGGCGTCGACGTCGTCGCGCCGGC
GCCGCTGCTCCAGCAAGAGCAGCAGTAGTCGAGTCTCGCGCCGCGCCGCGCCCGCCATTA
GCCATTTCGGAGCTGATGTCTAATGGTCGTTGTGCGTTGTGTGTGACTGCGTGTGTTTTG
GGTTCTAAACTGCTATAATTACTAGTCTCCTCAGTCCTCAGTGGTTTGCATGCATGTAAA
AAATCGTGTCTCGTTTAATCAATAACGGTAAACATGGATTAAAAAAAAAAAA

consensusID : consensus_14818#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [CACCTGGGAGGGGCCCGACGGGCCCCGTCGACGCCCAACTCCAGCCCGCCCCGCCCGCCGTCGATCCCAACGACCCCAACTACGACGAGGGCGACGGCGCCGGAGTCGACGAGGAGGTTGCCAAGGAGGTCGTCATCGGCGAGGTGGAGGTCGCCAAGGTCGCCGAGGCCAGGGACGGCGTCGACGTCGTCGCGCCGGCGCCGCTGCTCCAGCAAGAGCAGCAGTAGTCGAGTCTCGCGCCGCGCCGCGCCCGCCATTAGCCATTTCGGAGCTGATGTCTAATGGTCGTTGTGCGTTGTGTGTGACTGCGTGTGTTTTGGGTTCTAAACTGCTATAATTACTAGTCTCCTCAGTCCTCAGTGGTTTGCATGCATGTAAAAAATCGTGTCTCGTTTAATCAATAACGGTAAACATGGATTAACTGTGGATTAAAAAA]

[+] EMBL AU183706             [CACCTGGGAGGGGCCCGACGGGCCCCGTCGACGCCCAACTCCAGCCCGCCCCGCCCGCCGTCGATCCCAACGACCCCAACTACGACGAGGGCGACGGCGCCGGAGTCGACGAGGAGGTTGCCAAGGAGGTCGTCATCGGCGAGGTGGAGGTCGCCAAGGTCGCCGAGGCCAGGGACGGCGTCGACGTCGTCGCGCCGGCGCCGCTGCTCCAGCAAGAGCAGCAGTAGTCGAGTCTCGCGCCGCGCCGCGCCCGCCATTAGCCATTTCGGAGCTGATGTCTAATGGTCGTTGTGCGTTGTGTGTGACTGCGTGTGTTTTGGGTTCTAAACTGCTATAATTACTAGTCTCCTCAGTCCTCAGTGGTTTGCATGCATGTAAAAAATCGTGTCTCGTTTAATCAATAACGGTAAACATGGATTAACTGTGGATTAAAAAA]




>consensus_14818#2
CACCTGGGAGGGGCCCGACGGGCCCCGTCGACGCCCAACTCCAGCCCGCCCCGCCCGCCG
TCGATCCCAACGACCCCAACTACGACGAGGGCGACGGCGCCGGAGTCGACGAGGAGGTTG
CCAAGGAGGTCGTCATCGGCGAGGTGGAGGTCGCCAAGGTCGCCGAGGCCAGGGACGGCG
TCGACGTCGTCGCGCCGGCGCCGCTGCTCCAGCAAGAGCAGCAGTAGTCGAGTCTCGCGC
CGCGCCGCGCCCGCCATTAGCCATTTCGGAGCTGATGTCTAATGGTCGTTGTGCGTTGTG
TGTGACTGCGTGTGTTTTGGGTTCTAAACTGCTATAATTACTAGTCTCCTCAGTCCTCAG
TGGTTTGCATGCATGTAAAAAATCGTGTCTCGTTTAATCAATAACGGTAAACATGGATTA
ACTGTGGATTAAAAAA

consensusID : consensus_14818#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [NCTNANANCNTNACTGNACGGAGGGGCGACGGCGCTGGANGTCGATCGAGGAGGTTGCCAAGGAGGTCGTCATCNGCGAGGTGGAGGTCGCCAAGGTCGCCGAGGCCAGGGACGGCGTCGACGTCGTCGCGCGCGCCGCTTNCTCCAGCAAGAGCAGCAGTAGTCGAGTCTCGCGCCGGNCGGNCCGCCATTAGCCATTTCGGAGCTGATGTCTAATGGTCGTTGTGCGTTTGTGTGTGACTGCGTGTGTTTTTNGGGTTCTAAACTGCTATAATTACTAGTCTCCTCAAGTCCTCAGTNGGTTTGCATGCATGTAAAAAAATCGTGTCTCGTTTAATCAATAACGGTAAACAATGGGATTAACTT]

[+] EMBL AU161423             [NCTNANANCNTNACTGNACGGAGGGGCGACGGCGCTGGANGTCGATCGAGGAGGTTGCCAAGGAGGTCGTCATCNGCGAGGTGGAGGTCGCCAAGGTCGCCGAGGCCAGGGACGGCGTCGACGTCGTCGCGCGCGCCGCTTNCTCCAGCAAGAGCAGCAGTAGTCGAGTCTCGCGCCGGNCGGNCCGCCATTAGCCATTTCGGAGCTGATGTCTAATGGTCGTTGTGCGTTTGTGTGTGACTGCGTGTGTTTTTNGGGTTCTAAACTGCTATAATTACTAGTCTCCTCAAGTCCTCAGTNGGTTTGCATGCATGTAAAAAAATCGTGTCTCGTTTAATCAATAACGGTAAACAATGGGATTAACTT]




>consensus_14818#3
NCTNANANCNTNACTGNACGGAGGGGCGACGGCGCTGGANGTCGATCGAGGAGGTTGCCA
AGGAGGTCGTCATCNGCGAGGTGGAGGTCGCCAAGGTCGCCGAGGCCAGGGACGGCGTCG
ACGTCGTCGCGCGCGCCGCTTNCTCCAGCAAGAGCAGCAGTAGTCGAGTCTCGCGCCGGN
CGGNCCGCCATTAGCCATTTCGGAGCTGATGTCTAATGGTCGTTGTGCGTTTGTGTGTGA
CTGCGTGTGTTTTTNGGGTTCTAAACTGCTATAATTACTAGTCTCCTCAAGTCCTCAGTN
GGTTTGCATGCATGTAAAAAAATCGTGTCTCGTTTAATCAATAACGGTAAACAATGGGAT
TAACTT

consensusID : consensus_14818#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 197
fasta sequence

                              [AGCGATCCGTCGCGCACCAGCTTAATCTACCAACCAGTTCGCCGGAGAATTCAGGTGAGGATATATNGCGTACATNCGGGTGACTCACCGGGACGAGGAGGGGAAGAAGGTNACGGAGAAGGTNCCGATCCCGGANANNCTGCGTCCCGACACTNCGAGGCACTTCGAGCTGAAGTTTGAAGGAGCAAGGGTTCCAC]

[+] EMBL OSC774               [AGCGATCCGTCGCGCACCAGCTTAATCTACCAACCAGTTCGCCGGAGAATTCAGGTGAGGATATATNGCGTACATNCGGGTGACTCACCGGGACGAGGAGGGGAAGAAGGTNACGGAGAAGGTNCCGATCCCGGANANNCTGCGTCCCGACACTNCGAGGCACTTCGAGCTGAAGTTTGAAGGAGCAAGGGTTCCAC]




>consensus_14818#4
AGCGATCCGTCGCGCACCAGCTTAATCTACCAACCAGTTCGCCGGAGAATTCAGGTGAGG
ATATATNGCGTACATNCGGGTGACTCACCGGGACGAGGAGGGGAAGAAGGTNACGGAGAA
GGTNCCGATCCCGGANANNCTGCGTCCCGACACTNCGAGGCACTTCGAGCTGAAGTTTGA
AGGAGCAAGGGTTCCAC

consensusID : consensus_14818#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 148
fasta sequence

                              [GCCGGCCGCCCAAGTCCGGCCGCGGCCAAGTTCACCTGGGAGGGGCCCGACGCGCTCGACGCCCAGCTCCAGCCCGCCCCGCCCGCCGTCGATCCCAACGACCCCAACTACGACTGAGGGGCGACGGTGGAGTGACGAGGAGGTTGAA]

[+] EMBL AA749922             [GCCGGCCGCCCAAGTCCGGCCGCGGCCAAGTTCACCTGGGAGGGGCCCGACGCGCTCGACGCCCAGCTCCAGCCCGCCCCGCCCGCCGTCGATCCCAACGACCCCAACTACGACTGAGGGGCGACGGTGGAGTGACGAGGAGGTTGAA]




>consensus_14818#5
GCCGGCCGCCCAAGTCCGGCCGCGGCCAAGTTCACCTGGGAGGGGCCCGACGCGCTCGAC
GCCCAGCTCCAGCCCGCCCCGCCCGCCGTCGATCCCAACGACCCCAACTACGACTGAGGG
GCGACGGTGGAGTGACGAGGAGGTTGAA

consensusID : consensus_14818#6
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 139
fasta sequence

                              [CAGTAGGGGCGCCCACCCCCCATTTGATGTTTTTCGAATTTTTTTACTTTGTTTGAGTTTTATTTACGTTTTGTATGCGTGTAATTTATGCCTCTGTATGAATAATAATCGAGCATCAAACTGAACTTGGATGAAAAAA]

[+] EMBL BI800045             [CAGTAGGGGCGCCCACCCCCCATTTGATGTTTTTCGAATTTTTTTACTTTGTTTGAGTTTTATTTACGTTTTGTATGCGTGTAATTTATGCCTCTGTATGAATAATAATCGAGCATCAAACTGAACTTGGATGAAAAAA]




>consensus_14818#6
CAGTAGGGGCGCCCACCCCCCATTTGATGTTTTTCGAATTTTTTTACTTTGTTTGAGTTT
TATTTACGTTTTGTATGCGTGTAATTTATGCCTCTGTATGAATAATAATCGAGCATCAAA
CTGAACTTGGATGAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14818#1      ------------------------------------------------------------
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ------------------------------------------------------------
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      CCGCCACCTCCTCCCCCTCTCCACACACTCTTCTTCTCCACTCCTCCGCCGCTCGCCTCG 60
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      ------------------------------------------------------------
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ------------------------------------------------------------
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      CCGCGCGCCGCTTATATACCCGCGTCTCTGCGCTCATCGATTCATCACCCAGATCGCAAT 120
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      ------------------------------------------------------------
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ------------------------------------------------------------
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      CCAACCACCGCAACCAATTCGCCGGAGAAAGTTGTGAATACCGACCTACCGGCGGCGAAG 180
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      ------------------------------------------------------------
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ------------------------------------------------------------
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      ATCGATGATGTACATGCGCGCGACGCACCGGGACGAGGAGGGGAAGAAGGTGACGGAGAA 240
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      ------------------------------------------------------------
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ------------------------------------------------------------
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      GGTGGCGGTGCCGGAGACGCGGCACCCGGACACGGCCAGGCACTTCGAGCGGAAGCTGGA 300
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      ------------------------------------------------------------
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ------------------------------------------------------------
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      CCAGCAGGGGCTCCACCGCATGGAGCGCCACCCGGCGAACGGCTCCCGCGGCATCGGCGC 360
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      ------------------------------------------------------------
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ------------------------------------------------------------
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      GCCGCCGCCCAAGTCCGGCCGCGGCGGCAAGTTCACCTGGGAGGGCCCCGACAGCATCGT 420
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      ------------------------------------------------------------
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ----------------------------CACCTGGGAGGGGCCCGACGGGCCCCGTCGAC 32
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      CGACAGCCAGCTCGATCCCCTCCCGGCCGCCATCGACCGCAACGACCCCAACTACGAGGA 480
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      ------------------------------------------------------------
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      GCCCAACTCCAGCCCGCCCCGCCCGCCGTCGATCCCAACGACCCCAACTACGACGAGGG- 91
consensus_14818#3      ----------------------------------NCTNANANCNTNACTGNACGGAGGGG 26
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      GGAGGAAGGCGACCACGAGCGCGAGGCCGACGTCGTCGGCGAGGTGGAGGTCGCCAAGGT 540
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      ------------------------------AGCGAGCGATCCGTCGCGCACCAGCTTAAT 30
consensus_14818#4      ----------------------------------AGCGATCCGTCGCGCACCAGCTTAAT 26
consensus_14818#2      CGACGGCGCCGGAG-TCGA-CGAGGAGGTTGCCAAGGAGGTCGTCATCGGCGAGGTGGAG 149
consensus_14818#3      CGACGGCGCTGGANGTCGATCGAGGAGGTTGCCAAGGAGGTCGTCATCNGCGAGGTGGAG 86
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      CGCCGGCGACGCCAGGGATGGTGTCGCCAGGGTCGACGTCGTCGCGCCGCCGCAGCTGCA 600
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      CTACCAACCAGTTCGCCGGAG--AATTCAGGTGAGGATAT-ATGGCGTACATGCGGGTGA 87
consensus_14818#4      CTACCAACCAGTTCGCCGGAG--AATTCAGGTGAGGATAT-ATNGCGTACATNCGGGTGA 83
consensus_14818#2      --GTCGCCAAGGTCGCCGAGGCCAGGGACGGCGTCGACGTCGTCGCGCCGGCGCCGCT-G 206
consensus_14818#3      --GTCGCCAAGGTCGCCGAGGCCAGGGACGGCGTCGACGTCGTCGCGC--GCGCCGCTTN 142
consensus_14818#5      -------------------------GCCGGCCGCCCAAGTCCGGCCGCG-GCCAAGTTCA 34
consensus_14818#0      CGAGAAACTGCAGCTGCAGCCGCAGTAGGGGCGCCCAGCCGCCATTTGAGTGGTGTTTTC 660
consensus_14818#6      ----------------------CAGTAGGGGCGCCCACCCCCCATTTGA----TGTTTTT 34
                                                    *  *   *                    *  

consensus_14818#1      CTC-ACCGGGACGAGGAGGGGAAGAAGGTGACG--GAGAAGGTGCCGATCCCGGAGACGC 144
consensus_14818#4      CTC-ACCGGGACGAGGAGGGGAAGAAGGTNACG--GAGAAGGTNCCGATCCCGGANANNC 140
consensus_14818#2      CTCCAGCAAGAGCAGCAGTAGTCGAGTCTCGCGCCGCGCCGCGCCCGCCATTAGCCATTT 266
consensus_14818#3      CTCCAGCAAGAGCAGCAGTAGTCGAGTCTCGCGCCG-GNCG-GNCCGCCATTAGCCATTT 200
consensus_14818#5      CCTGGGAGGGGCCCGACGCGCTCGACGCCCAGCTCCAGCCCGCCCCGCCCGCCGTCGATC 94
consensus_14818#0      GAAGTGTGTTTGTTACTTTGTTTGAGTGTTTATT---TACGGTTTTGTATGCGTGTTATT 717
consensus_14818#6      CGAAT---TTTTTTACTTTGTTTGAGT-TTTATT---TACG-TTTTGTATGCGTGTAATT 86
                                              **                     *             

consensus_14818#1      GGCGTCCCGACACCGCGAGGCACTTCGAGCGGAAGCT-GGAGGAGCAAGGGTTCCACCGC 203
consensus_14818#4      TGCGTCCCGACACTNCGAGGCACTTCGAGCTGAAGTTTGAAGGAGCAAGGGTTCCAC--- 197
consensus_14818#2      CGGAGCTGATGTCTAATGGTCGTTGTGCGTT-GTGTGTGACTGCGTGTGTTTT--GGGTT 323
consensus_14818#3      CGGAGCTGATGTCTAATGGTCGTTGTGCGTTTGTGTGTGACTGCGTGTGTTTTTNGGGTT 260
consensus_14818#5      CCAA---CGACCCCAACTACGACTGAGGGGCGACGGTGGAGTGACGAGGAGGTTGAA--- 148
consensus_14818#0      TATGCCTCTGTATGAATAATAATCGAGCATCAAACTGAACTTGGATGAAAAAAAAAAAAA 777
consensus_14818#6      TATGCCTCTGTATGAATAATAATCGAGCATCAAACTGAACTTGGATGAAAAAA------- 139
                                                 *               *                 

consensus_14818#1      CTGGAGCGCCACCCGGCGAACGGGCCCGCGCGGGCCGGCATCGGCGCGCCGCGCCCAAGT 263
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      CTAAACTGCTATAATTACTAGTCTCCTCA-GTCCTCAGTGG-TTTGCATGCATGTAAAAA 381
consensus_14818#3      CTAAACTGCTATAATTACTAGTCTCCTCAAGTCCTCAGTNGGTTTGCATGCATGTAAAAA 320
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      AAAAAAAACTCGAGAGT------------------------------------------- 794
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      CCGGCCGCGGCGGCAAGTTCACCTGGGAGGGGCCCGACGGCCCCGTCGACGCCCAACTCC 323
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      A-TCGTGTCTCGTTTAATCAATAACGGTAAACAT--GGATTAACTGTGGATTAAAAAA-- 436
consensus_14818#3      AATCGTGTCTCGTTTAATCAATAACGGTAAACAATGGGATTAACTT-------------- 366
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      ------------------------------------------------------------
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      AGCCCGCCCCGCCCGCCGTCGATCCCAACGACCCCAACTACGACGAGGGCGACGGCGCCG 383
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ------------------------------------------------------------
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      ------------------------------------------------------------
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      GAGTCGACGAGGAGGTTGCCAAGGAGGTCGTCATCGGCGAGGTGGAGGTCGCCAAGGTCG 443
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ------------------------------------------------------------
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      ------------------------------------------------------------
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      CCGAGGCCAGGGACGGCGTCGACGTCGTCGCGCCGGCGCCGCTGCTCCAGCAAGAGCAGC 503
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ------------------------------------------------------------
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      ------------------------------------------------------------
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      AGTAGTCGAGTCTCGCGCCGCGCCGCGCCCGCCATTAGCCATTTCGGAGCTGATGTCTAA 563
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ------------------------------------------------------------
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      ------------------------------------------------------------
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      TGGTCGTTGTGCGTTGTGTGTGACTGCGTGTGTTTTGGGTTCTAAACTGCTATAATTACT 623
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ------------------------------------------------------------
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      ------------------------------------------------------------
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      AGTCTCCTCAGTCCTCAGTGGTTTGCATGCATGTAAAAAATCGTGTCTCGTTTAATCAAT 683
consensus_14818#4      ------------------------------------------------------------
consensus_14818#2      ------------------------------------------------------------
consensus_14818#3      ------------------------------------------------------------
consensus_14818#5      ------------------------------------------------------------
consensus_14818#0      ------------------------------------------------------------
consensus_14818#6      ------------------------------------------------------------
                                                                                   

consensus_14818#1      AACGGTAAACATGGATTAAAAAAAAAAAA 712
consensus_14818#4      -----------------------------
consensus_14818#2      -----------------------------
consensus_14818#3      -----------------------------
consensus_14818#5      -----------------------------
consensus_14818#0      -----------------------------
consensus_14818#6      -----------------------------