These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14833#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1414 fasta sequence [TTCCGATGAGGAATTAGTTAGCTCTCGAACAGTAGTACGAGATTTGTGCAAGTTGTGGTCCTGTCGTCATCCTGTGGAGTTGTGGTGAGTGTTTGACGAATTTTTTTTTTTTTTGGCGGCTCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCG-AGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCT-ACCT-GGAGCAGGAGCT-GGACCGGC-GGTGCCGCCTC-TTCCGCCTCTGGGAG-TCCCCCGCCGACCGCCGCGACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGGCGTCGACGCCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG-CG-CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA-TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA-TG-TCGCCGGCAAGCCGCTGCTGACG-CA-GGTGGTGTGAGCTAATTGA-GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCA-GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA-CGGTCGGTCTGGGACGAT-CCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAGTGTGTTGGGTTG-AAACGG---AAAAAAAAAAANAAAAAA] [+] EMBL AK069655 [TTCCGATGAGGAATTAGTTAGCTCTCGAACAGTAGTACGAGATTTGTGCAAGTTGTGGTCCTGTCGTCATCCTGTGGAGTTGTGGTGAGTGTTTGACGAATTTTTTTTTTTTTTGGCGGCTCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCGGCGAACCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCG AGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCT ACCT GGAGCAGGAGCT GGACCGGC GGTGCCGCCTC TTCCGCCTCTGGGAG TCCCCCGCCGACCGCCGCGACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGGCGTCGACGCCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CG CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTGCTGACG CA GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCA GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA CGGTCGGTCTGGGACGAT CCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAG ] [+] EMBL OSC104031 [ AGGAATTAGTTAGCTCTCGAACAGTAGTACGAGATTTGTGCAAGTTGTGGTCCTGTCGTCATCCTGTGGAGTTGTGGTGAGTGTTTGACGAATTTTTTTTTTTTTTGGCGGCTCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGNCGCCTGCNACGGCG AGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCAGATGAACGNCT ACCTGGGAGCAGGAGCTGGGACCGGCGGGTGCCGCCTCTTTCCG CTCTNGGAGTTCCCCAGCCGACCGCCGCGACGAC ] [+] EMBL C74490 [ AGTAGTACGAGATTTGTGCAAGTAGTGGTCCTGTCGTCATCCTGTGGAGTNGTGGTGAGTGTATGACGAATTTTTTTTTTTTTTGGCGGCTCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAANCGGACACGGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGANGGCGAAGGCGGCGAGCGATGGATT CCTGGGCGTNCTGCTGGTGGCGCCATTAAACGCCTAACTT GGAGCAGGAGCT GGACCGGN GGTGCCGC ] [+] EMBL AK059778 [ TTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCG AGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCT ACCT GGAGCAGGAGCT GGACCGGC GGTGCCGCCTC TTCCGCCTCTGGGAG TCCCCCGCCGACCGCCGCGACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGGCGTCGACGCCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CG CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTGCTGACG CA GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCA GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA CGGTCGGTCTGGGACGAT CCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAGTG ] [+] EMBL CB654791 [ gCGGACACTGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCG AGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCT ACCT GGAGCAGGAGCT GGACCGGC GGTGCCGCCTC TTCCGCCTCTGGGAG TCCCCCGCCGACCGCCGCGACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGGCGTCGACGCCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGC ] [+] EMBL CB661286 [ CTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCCCCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CG CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGGCTGGACGTGTTCTAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCC TG TCGCCGGCA ] [-] EMBL CB654792 [ GTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CG CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGGCTGGACGTGTTTGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTGCTGACG CA GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCA GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA CGGTCGGTTTGGGACGAT CCAGTAATAACGATTTAATATT ] [-] EMBL CB661285 [ CACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGGATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAGAGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CG CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTGCTGACG CA GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCA GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA CGGTCGGTCTGGGACGAT CCAGTAATAACGATTTAATATT ] [+] EMBL BQ907276 [ CCCGGCTACACCTACTACCCGTCGGT GTGGA CT GCGGCGAGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CGCCTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTTGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCATTGTTCGCCGGCAAGCCGCTGCTGACN CA GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCCAAGCA GGTGCAATTCGACCAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACACCGGTCGGTCTGGGACGAT CCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAGTGTGTTGGGTTGTAAACGG AAAAAAAAAA ] [+] EMBL BI799473 [ cgtGTGGA CT GC GCGAGCAGCGACGTGCTGGT GTGGCGTGCCCCCTGAACGAGCACACCCGGCACATCGTGAACCGGGAGGTGATGGAGG CG CTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCGCACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTTGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTGCTGACG CA GGTGGTGTGAGCTAATTGACGTGACTGGATGATTCTGATTTGATTGATTCCCAAGCA GGTGC ATTCGACCAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACC CGGTCGGTCTGGGACGATCCCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAaaaaaa ] [+] EMBL BM421965 [ TGGAGGCCC CTGGGCCCCAGGGGCGTGCTGATCAACATC GCC GGGGCCGCACGTCGACGAGGCGGCGATGGT GCGGCGCTGGCCGACGGCCGGCTTGGCGGCGCCGGGCTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTGCTCGGGATGGACAACGTCGTGCTGGTGCCGCATGTGGGCAGCGCGACGCACGAGACGCGCACGGCCACTGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTGCTGACGCCACGGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCCAAGCACGGTGCAATTCGACCAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACC CGGTCGGTCTGGGACGAT CCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAGTGTGTTGGGTTG AAACGGCCCACCAAAAAAAANAAAAA ] [+] EMBL C96635 [ GGCAGCGCGACNCACGAGACGCGCACGGCCA TGGCCGACCTGGTGCTCGGCAACCTGGAGGCNCA TG TCGCCGGCAAGCCGTTG TGACG CN GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCN GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA CGGTCGGTCTGGGACGAT CCNGTNATAACGATTTAATATTTGTCATTGGAAATGTGAAAAGTNTGTTGGNTTG AAAAAA AAAAAAAAAAAAAAAAAA] [+] EMBL AU092326 [ CGACGCACGAGACGCGCACGGCCA TGNCCGACCTGGTGCTCGGCAACCTGGAGGCGCA TG TCGCCGGCAAGCCGCTG TGACG CA GGTGGTGTGAGCTAATTGA GTGACTGGATGATTCTGATTTGATTGATTCCAAAGCA GGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCTTTTTGTAAACA CGGTCGGTCTGGGACGAT CCAGTAATAACGATTTAATATTTGTCATTGGAAATGTGAAAAGTGTGTTGGGTTG AAACGG AAAAAAAA ] consensusID : consensus_14833#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 928 fasta sequence [TGAGTGTTTGACGAATTTTTTTTTTTTTTTTTTGGCGGCTCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCGAGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCTACCTGGAGCAGGAGCTGGACCGGCGGTGCCGCCTCTTCCGCCTCTGGGAGTCCCCCGCCGACCGCCGCGACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGG-GT-C-GACGNCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGTAAAAGAGTTGGTATTCTGGGGCTTGGCAGGATAGGCTTAGCCGTAGCAAAAAGAGCTGAGGCATTTGATTGCCCAATCAGCTATCATTCAAGATCAGAGAAACCATTTCCAAAGTACAAATTTTATCCAAATGTTGTTGACCTGGCAGCCAACTGTGATGTGCTAGTCGTAGCATGCTCACTTAATCCAGAGACCCGTCACATTGTAAACCGTAAGGTCATTGATGCACTAGGACCAGAGGGAGTGCTCATAAACATTGCTCGTGGAGCACATGTGGATGAACCTGAGCTTATATCCGCGCTTCTTGAGAAACGCTTGGG] [+] EMBL AK101390 [TGAGTGTTTGACGAATTTTTTTTTTTTTTTTTTGGCGGCTCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCGAGGCGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCTACCTGGAGCAGGAGCTGGACCGGCGGTGCCGCCTCTTCCGCCTCTGGGAGTCCCCCGCCGACCGCCGCGACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGGCGT C GACGCCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCGCTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCGACTTCACGCTCACCACTCGGTTCAGTGGTAAAAGAGTTGGTATTCTGGGGCTTGGCAGGATAGGCTTAGCCGTAGCAAAAAGAGCTGAGGCATTTGATTGCCCAATCAGCTATCATTCAAGATCAGAGAAACCATTTCCAAAGTACAAATTTTATCCAAATGTTGTTGACCTGGCAGCCAACTGTGATGTGCTAGTCGTAGCATGCTCACTTAATCCAGAGACCCGTCACATTGTAAACCGTAAGGTCATTGATGCACTAGGACCAGAGGGAGTGCTCATAAACATTGCTCGTGGAGCACATGTGGATGAACCTGAGCTTATATCCGCGCTTCTTGAGAAACGCTTGGG] [+] EMBL OSC101842 [ ACTCCGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATNGCCGCCTGCAACGGCGAGGCGGCGAGCNATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATNAACGCCTACCTGGAGCAGGAGCTGGACCGGCGGTGCCGCCTCTTCCGCCTCTGGNAGTCCCCCGCCGACCGCCGCNACGACTACCTCCGCGCCCACGCCTCCTCCATCCGNGCCGTCGTCCCCTACGCCCTCCAGGG GTNC GACGNCGCCATGATCNAAGGCCTCCCCTCCCTCGANATCG ] [+] EMBL C26522 [ ACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCGAGGCGG GAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCTACCTGGAGCAGGAGCTGGACCGGCGGTGNC CCTCTTCCGCCTCTNGGAGTCCCCCGTCGACCGTCGCGACGACTACCTCCGCGGCCACGTCTCCTCCATCCGCGTCGTCGTCCCCTACGNCCTCCAGGG TT CTGACGGCGCCATGATCGACGTCCTCCTCTCCCTCGAGATCGTCTCCTCCTTCTCCGTCGGCATCGACCGNGT ] consensusID : consensus_14833#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [CTGAATCAACATCGCCCGGGCCACCACTTCGACGAGCGCCATGGTGCGGCCTGCCGACGCCGGCTTGCGGCCCGGGCTGGACCTGTTCGAGGACGACCGAACGTGCCCGAGGCCCTGTCTCGGGATGGACAAACGTCGTGCTGGTCCCCATGTGGGCCGCGCGACGCACCGAGACGCGCCCGGCCCTGGCCGACCTGGTGCTCGGCCACCTGGAGGCGCATGTCGCCGGCAAACCGCCTGCTGACCCCGGTGGTGTGAGCTAATTGAGTGACTGGATGATTCTGATTTGATTGATTCCCAAGCCGGTGCCATTCGACCAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCCTTTTGTAAACCCGGTCGGTCTGGGACGATCCCAGTAATAACGATTTAATATTTGTCCTTGGAAATGTGAAAAGTGTTTTGGGTTGAAAAAAAAAA] [+] EMBL BI809957 [CTGAATCAACATCGCCCGGGCCACCACTTCGACGAGCGCCATGGTGCGGCCTGCCGACGCCGGCTTGCGGCCCGGGCTGGACCTGTTCGAGGACGACCGAACGTGCCCGAGGCCCTGTCTCGGGATGGACAAACGTCGTGCTGGTCCCCATGTGGGCCGCGCGACGCACCGAGACGCGCCCGGCCCTGGCCGACCTGGTGCTCGGCCACCTGGAGGCGCATGTCGCCGGCAAACCGCCTGCTGACCCCGGTGGTGTGAGCTAATTGAGTGACTGGATGATTCTGATTTGATTGATTCCCAAGCCGGTGCCATTCGACCAAATGTAGTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCCCCTTTTGTAAACCCGGTCGGTCTGGGACGATCCCAGTAATAACGATTTAATATTTGTCCTTGGAAATGTGAAAAGTGTTTTGGGTTGAAAAAAAAAA] consensusID : consensus_14833#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [CACGGCCATGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCATGTCGCCGGCAAGCCNNTNTGANGCAGGTGGTGTGNGCTAATTGAGTGACTGGATGATTNTGATTTGATTGATTCCAAAGCAGGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAANAATCTGTTTTCCCTTTTTGTAAACACGGTCGGTCTGGGACGATCCAGTAATAACGATTTAATATTTGTCATTGGAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU094802 [CACGGCCATGGCCGACCTGGTGCTCGGCAACCTGGAGGCGCATGTCGCCGGCAAGCCNNTNTGANGCAGGTGGTGTGNGCTAATTGAGTGACTGGATGATTNTGATTTGATTGATTCCAAAGCAGGTGCAATTCGACAAAATGTAGTATGTACTGTTTCAGGATGTGAANAATCTGTTTTCCCTTTTTGTAAACACGGTCGGTCTGGGACGATCCAGTAATAACGATTTAATATTTGTCATTGGAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 TTCCGATGAGGAATTAGTTAGCTCTCGAACAGTAGTACGAGATTTGTGCAAGTTGTGGTC 60 consensus_14833#1 ------------------------------------------------------------ consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 CTGTCGTCATCCTGTGGAGTTGTGGTGAGTGTTTGACGAATTTTTTTTTTTTTTGGCGGC 120 consensus_14833#1 ------------------------------------------------------------ consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 TCGATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTC 180 consensus_14833#1 ------------------------------------------------------------ consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 CGGCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCGAGG 240 consensus_14833#1 ------------------------------------------------------------ consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 CGGCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCTACCTGGAG 300 consensus_14833#1 ------------------------------------------------------------ consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 CAGGAGCTGGACCGGCGGTGCCGCCTCTTCCGCCTCTGGGAGTCCCCCGCCGACCGCCGC 360 consensus_14833#1 ------------------------------------------------------------ consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 GACGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAG 420 consensus_14833#1 ------------------------------------------------------------ consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 GGCGTCGACGCCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCC 480 consensus_14833#1 ------------------------------------------------------------ consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 GTCGGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAAC 540 consensus_14833#1 ------------------------------------------------------------ consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 ACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGGCTCGCCATCGCCGCG 600 consensus_14833#1 -------------------TGAGTGTTTGACGAATTTTTTTTTTTTTTTTTTGGCGGCTC 41 consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 CTCCGCAAGATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGC 660 consensus_14833#1 GATTGCAACCCGCGGCCCGCAACAAATCCGACGCCAAATCGGACACGGCCGGCGACTCCG 101 consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 GACTTCACGCTCACCACTCGGTTCAGTGGCAAGAGAGTCGGCATCATCGGTTTGGGCAGG 720 consensus_14833#1 GCGACCCACCACCACACACCAATCCTCCTCCTCCTCATCGCCGCCTGCGACGGCGAGGCG 161 consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 ATCGGGCTCGCCGTCGCGAAGCGAGTGGAGGCCTTCGACTGCCCGGTGAACTACTACCAG 780 consensus_14833#1 GCGAGCGATGGATTCCCTGGGCGTGCTGCTGGTGGCGCCGATGAACGCCTACCTGGAGCA 221 consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 AGGACGAAGCAGGATCACCCCGGCTACACCTACTACCCGTCGGTGGTGGAGCTGGCGGCG 840 consensus_14833#1 GGAGCTGGACCGGCGGTGCCGCCTCTTCCGCCTCTGGGAGTCCCCCGCCGACCGCCGCGA 281 consensus_14833#2 ------------------------------------------------------------ consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 AGCAGCGACGTGCTGGTGGTGGCGTGCCCGCTGAACGAGCACACCCGGCACATCGTGAAC 900 consensus_14833#1 CGACTACCTCCGCGCCCACGCCTCCTCCATCCGCGCCGTCGTCCCCTACGCCCTCCAGGG 341 consensus_14833#2 -----------------------------------CTGAATCAACATCGCCCGGGCCAC- 24 consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 CGGGAGGTGATGGAGGCGCTGGGGCCCAGGGGCGTGCTGATCAACATCGGCCGGGGGCCG 960 consensus_14833#1 GTCGACGNCGCCATGATCGACGCCCTCCCCTCCCTCGAGATCGTCTCCTCCTTCTCCGTC 401 consensus_14833#2 CACTTCGACGAGC-----GCCATGGTGCGGCCTGCCGACG-CCGGCTTG-CGGC-CCGGG 76 consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 CACGTCGACGAGGCGGCGATGGTGGCGGCGCTGGCCGACGGCCGGCTCGGCGGCGCCGGG 1020 consensus_14833#1 GGCATCGACCGCGTCGACCTCGACGCGTGCCTCCGCCGCGGGGTCCGCGTCACCAACACC 461 consensus_14833#2 CTGGACCTGTTCGAGGACGA-CCGAACGTGCCCGAGGCCCTGTCTCGGGATGGACAAACG 135 consensus_14833#3 ------------------------------------------------------------ consensus_14833#0 CTGGACGTGTTCGAGGACGAGCCGAACGTGCCCGAGGCGCTG-CTCGGGATGGACAA-CG 1078 consensus_14833#1 CCCGACGTCCTCACCGACGACGTCGCCGACCTCGCCGTGGGG-CTCGCCATCGCCGCGCT 520 consensus_14833#2 TCGTGCTGGTCCC-CATGTGGGCCGCGCGA--CGCACCGAGACGCGCCCGGCCCTGGCCG 192 consensus_14833#3 ----------------------------------------------CACGGCCATGGCCG 14 consensus_14833#0 TCGTGCTGGTGCCGCATGTGGGCAGCGCGA--CGCAC-GAGACGCGCACGGCCATGGCCG 1135 consensus_14833#1 CCGCAA-GATCCCCCAGGCCGACCGCTACGTCCGCGCCGGCAAGTGGAAGTCCAAGGGCG 579 * ** ** ** consensus_14833#2 ACCTGGTGCTCGGCCACCTG----GAGGCGCATGTCGCCGGCAAACCGCCTGCTGACCCC 248 consensus_14833#3 ACCTGGTGCTCGGCAACCTG----GAGGCGCATGTCGCCGGCAAGCCNNTN--TGANGCA 68 consensus_14833#0 ACCTGGTGCTCGGCAACCTG----GAGGCGCATGTCGCCGGCAAGCCGCTG-CTGACGCA 1190 consensus_14833#1 ACTTCACGCTCACCACTCGGTTCAGTGGTAAAAGA-GTTGGTATTCTGGGGCTTGGCAGG 638 ** * **** * * * * ** * * * ** * * ** consensus_14833#2 GGTGGTGTGAGC-TAATTGAGTGACTGGATGATTCTGATT---TGATTGATTCCCAAGCC 304 consensus_14833#3 GGTGGTGTGNGC-TAATTGAGTGACTGGATGATTNTGATT---TGATTGATTCCAAAGCA 124 consensus_14833#0 GGTGGTGTGAGC-TAATTGAGTGACTGGATGATTCTGATT---TGATTGATTCCAAAGCA 1246 consensus_14833#1 ATAGGCTTAGCCGTAGCAAAAAGAGCTGAGGCATTTGATTGCCCAATCAGCTATCATTCA 698 ** * * ** * ** ** * * ***** ** * * * consensus_14833#2 GGTGCCATTCGACCAAATGTA--GTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCC 362 consensus_14833#3 GGTGCAATTCGACAAAATGTA--GTATGTACTGTTTCAGGATGTGAANAATCTGTTTTCC 182 consensus_14833#0 GGTGCAATTCGACAAAATGTA--GTATGTACTGTTTCAGGATGTGAAAAATCTGTTTTCC 1304 consensus_14833#1 AGATCAGAGAAACCATTTCCAAAGTACAAATTTTATCCAAATGTTGTTGACCTGGCAGCC 758 * * ** * * * *** * * * ** **** * *** ** consensus_14833#2 CCTTTTGTAAACCCGGTCGGTCTGGGACGATCCCAGTAATAACGATTTAATATTTGTCCT 422 consensus_14833#3 CTTTTTGTAAACACGGTCGGTCTGGGACGATCC-AGTAATAACGATTTAATATTTGTCAT 241 consensus_14833#0 CTTTTTGTAAACACGGTCGGTCTGGGACGATCC-AGTAATAACGATTTAATATTTGTCAT 1363 consensus_14833#1 AACTGTGATGTGCTAGTCGTAGCATGCTCACTTAATCCAGAGACCCGTCACATT-GTAAA 817 * ** **** * * * * * * * *** ** consensus_14833#2 TGGAAATGTGAAAAGTGTTTTGGGTTGAAAAAAAAAA----------------------- 459 consensus_14833#3 TGGAAAAAAAAAAAA-------AAAAAAAAAAAAAAA----------------------- 271 consensus_14833#0 TGGAAATGTGAAAAGTGTGTTGGGTTGAAACGGAAAAAAAAAAANAAAAAA--------- 1414 consensus_14833#1 CCGTAAGGTCATTGATGCACTAGGACCAGAGGGAGTGCTCATAAACATTGCTCGTGGAGC 877 * ** * * * * consensus_14833#2 --------------------------------------------------- consensus_14833#3 --------------------------------------------------- consensus_14833#0 --------------------------------------------------- consensus_14833#1 ACATGTGGATGAACCTGAGCTTATATCCGCGCTTCTTGAGAAACGCTTGGG 928 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||