These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1420 fasta sequence [TTAATTCTCGCGTCGTGTCAGACCACGCTGCCGCGGGGGATCTGCCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGCGTCGCCGGCGCCGGCGGCGG-GATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGCGA-TCCAGGAGAGGAATCGGCGATGGATCCGTCGGGATGCTCCAATCCCTCACTGTCGCTGCGCTTTCTGGATGTGTTAATGTACTTCTCACAAACCCAATTTGGGTAATTGTTACACGAATGCAAACTCACCGGAAGGCAAACAAACAGCAGAGTCCTCTGGATTTGACGTGTGTTCTTGACAAGGCCCTACAAGCTCCCGCTGTTGAAAACATACCTCACAAGACTATCCATGTTATTCAGGACCTTTACAAAGAAGCTGGA-TTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGACTGCTCTTGAAATTTTCCTTCTTGGTGCTGTTGCCAAACTGGGTGCGACTGTTGTTACATATCCTCTTCTAGTTGTGAAGGCAAGACTTCAGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGCACATTTGATGCGATCACAAAGATGATACGTTATGAAGG-TTTGT-CAGGGCTTT-ATAAAGGAATGAGCA-CAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAACTGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATG-ATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTATCTCTGTTGCTCGTGTAAAGTATACTGTTATGGAAGATTGAAACACTAGAAAATAAGTTGGCAATGAGAATCGCAAGCGCTAGTCATCTGTTCAGATTAAAAAA] [+] EMBL CB641141 [TTAATTCTCGCGTCGTGTCAGACCACGCTGCCGCGGGGGATCTGCCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGCGTCGCCGGCGCCGGCGGCGG GATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGCGA TCCAGGAGAGGAATCGGCGATGGATCCGTCGGGATGCTCCAATCCCTCACTGTCGCTGCGCTTTCTGGATGTGTTAATGTACTTCTCACAAACCCAATTTGGGTAATTGTTACACGAATGCAAACTCACCGGAAGGCAAACAAACAGCAGAGTCCTCTGGATTTGACGTGTGTTCTTGACAAAGCCCTACAAGCTCCCGCTGTTGAAAACATACCTCACAAGACTATCCAT ] [+] EMBL CB641144 [TTAATTCTCGCGTCGTGTCAGACCACGCTGCCGCGGGGGATCTGCCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGCGTCGCCGGCGCCGGCGGCGG GATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGCGA TCCAGGAGAGGAATCGGCGATGGATCCGTCGGGATGCTCCAATCCCTCACTGTCGCTGCGCTTTCTGGATGTGTTAATGTACTTCTCACAAACCCAATTTGGGTAATTGTTACACGAATGCAAACTCACCGGAAGGCAAACAAACAGCAGAGTCCTCTGGATTTGACGTGTGTTCTTGACAAGGCCCTACAAGCTCCCGCTGTTGA ] [+] EMBL AK101498 [ TCTCGCGTCGTGTCAGACCACGCTGCCGCGGGGGATCTGCCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGCGTCGCCGGCGCCGGCGGCGG GATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGCGA TCCAGGAGAGGAATCGGCGATGGATCCGTCGGGATGCTCCAATCCCTCACTGTCGCTGCGCTTTCTGGATGTGTTAATGTACTTCTCACAAACCCAATTTGGGTAATTGTTACACGAATGCAAACTCACCGGAAGGCAAACAAACAGCAGAGTCCTCTGGATTTGACGTGTGTTCTTGACAAGGCCCTACAAGCTCCCGCTGTTGAAAACATACCTCACAAGACTATCCATGTTATTCAGGACCTTTACAAAGAAGCTGGA TTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGACTGCTCTTGAAATTTTCCTTCTTGGTGCTGTTGCCAAACTGGGTGCGACTGTTGTTACATATCCTCTTCTAGTTGTGAAGGCAAGACTTCAGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGCACATTTGATGCGATCACAAAGATGATACGTTATGAAGG TTTGT CAGGGCTTT ATAAAGGAATGAGCA CAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAACTGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATG ATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTATCTCTGTTGCTCGTGTAAAGTATACTGTTATGGAAGATTGAAACACTAGAAAATAAGTTGGCAATGAGAATCGCAAGCGCTAGTCATC ] [+] EMBL CF310545 [ GTGTCAGACCACGCTGCCGCGGGGGATCTGCCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGTGTCGCCGGCGCCGGCGGCGG GATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTC ] [+] EMBL C98586 [ TGTCAGACCACGCTGCCGCGGGGNATCTGNCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGCGTCGCCGGCGCCGGCGGGGG NATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCA CAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAAATGTGCCTGGTGGTGAAG ATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGG CGCGGCTNTTCAGCGA TCCAGGAGAGGAATCGGCGATGGATCCGTCGGGAT ] [+] EMBL C74844 [ GCCGGGTGGCGAGGCTGCGGAGATGTCGGACGCGCTGATCAACGGCGTCG CGGCGCCGGCGGCGGTGATCATCGCCCAGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAG AGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATNCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGCGATTCCAGGAAAGGNATCGGCGATGGATCNGTCGGGATGCTCCAATCC ] [+] EMBL CF320015 [ GCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCTCCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAGGGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGGGTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGCGA TCCAGGAGAGGAATCGGCGATGGATCCGTCGGGATGCTCCAATCCCTCACTGTCGCTGCGCTTTCTGGATGTGTTAATGTACTTCTCACAAACCCAATTTGGGTAATTGTTACACGAATGCAAACTCACCGGAAGGCAAACAAACAGCAGAGTCCTCTGGATTTGACGTGTGTTCTTGACAAGGCCCTACAAGCTCCCGCTGTTGAAAACATACCTCACAAGACTATCCATGTTATTCAGGACCTTTACAAAGAAGCTGGATTTTTTGGGCTTCTGGAAGGGTGTAGTTCCAGCTCTTATTATGGTTAGCAACCCTGCAATCCAAT ] [+] EMBL C98587 [ CACAAAGATGATACGTTATGAAGGTTTTGTCCAGGTCTTTAATAAAGNAATGAGCACCAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAA TGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATGCATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTATCTCTGTTGCTCGTGTAAAGTATACTGTTATGGAAGATTGAAACACTAGAAAATAAGTTGGCAATGAGAATCGCAAGCGCTAGTCATCTGTTCAGATTAAAAAA] [-] EMBL CF320016 [ ATGAAGG TTTGT CAGGGCTTT ATAAAGGAATGAGCA CAAAAATCGTACAAAGCGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAACTGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATG ATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTATCTCTGTTGCTCGTGTAAAGTATACTGTTATGGAAGATTGAAACACTAGAAAATAAGTTGGCAAaaaa ] consensusID : consensus_14880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 584 fasta sequence [TTGTGTTTCATGATGAGATACTCTATTCTTGCAATTACATGCTGCTGATTACTGGATCCAAGACTAACAGCTGTTCTTATATGGCAAAAAAGGCCTCATTTATTTTTTCCTAGGCCTCATCCCACTTCCTAAACTGTTAGCTCATCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCCTTCATCTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAGTGCTAATGATTCAAACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTCACGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCA-TCTGTCATCAGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGACTGCTCATGCAGTAAGCCTTCGGCTCATGGGTTAG] [+] EMBL CB639215 [TTGTGTTTCATGATGAGATACTCTATTCTTGCAATTACATGCTGCTGATTACTGGATCCAAGACTAACAGCTGTTCTTATATGGCAAAAAAGGCCTCATTTATTTTTTCCTAGGCCTCATCCCACTTCCTAAACTGTTAGCTCATCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCCTTCATCTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAGTGCTAATGATTCAAACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTCAGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCA TCTGTCATCAGGTTAGCAACCCTGCAATCC ATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAA ] [+] EMBL CB638023 [ AGACACTCTATTCTTGCAATTACATGCTGCTGATTACTGGATCCAAGACTAACAGCTGTTCTTATATGGCAAAAAAGGCCTCATTTAGTTTTTCCTAGGCCTCATCCCAGTTCCTAAACTGTTAGCTCATCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCCTTCATCTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGCCAATATGCAAGTGCTAATGATTCAAACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTCACGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGCTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTCTCCATGTTTCACTCTGTCATCATGTTAGCAACCCTGCAATCC ] [+] EMBL CB637708 [ AACTGTAAACTGAGCTTTATTTTTTTGACCCTAAACTGCCGATCAAACCCATCCTTCATCTATGAAAACCAACTAAAACTTGTCCTCCTAAGCACTTCATATACTCAAAATGCAAGTGCTAATGATTCAAACTTTGTATGGGGCATGGCTGATTGACTCCGTTTGGCTGCAGATTCACGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCA TCTGTCATCAGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGA ] [-] EMBL CB637078 [ TGCGGATAAAACCCATCTTTCATCTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAGTGCTAATGATTCAGACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTCAGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCA TCTGTCATCAGGTTAGCAACCCTGCAATCCAATTCATGTAGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTGTCATTTGAAGGGAGCTGATGGACTGACTGCTCATGCAGTAAGCCTTCGGCTCATGGGTTAG] [+] EMBL CB637341 [ TGACTCCGTTTGGCTGCAGATTCACGACCTTTACAAAGAACCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCCCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCA TCTGTCATCAGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAa ] consensusID : consensus_14880#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [CATTTAATTTTTCCTAAGCCTCATCCCAGTTCCTAAACTGTTAGCTCAGCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCTTTCTTTTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAGTGCTAATGATTCAGACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTCAGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCATCTGTCATCAAGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGACTGCTCTTGAAGTAAGCTTTTGGCTTTTTGGCTTTTCTGGTG] [+] EMBL CB640221 [CATTTAATTTTTCCTAAGCCTCATCCCAGTTCCTAAACTGTTAGCTCAGCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCTTTCTTTTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAGTGCTAATGATTCAGACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTCAGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATTGTTTCCATGTTTCATCTGTCATCAAGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGACTGCTCTTGAAGTAAGCTTTTGGCTTTTTGGCTTTTCTGGTG] consensusID : consensus_14880#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 489 fasta sequence [AGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGCACATTTGATGCGATCACAAAGATGATACGTTATGAAGGTTTGTCAGGGCTTTATAAAGGAATGAGCACAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAACTGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATGATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTATCTCTGTTAAAAAAAAACACAAAAA] [-] EMBL CF310546 [AGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGCACATTTGATGCGATCACAAAGATGATACGTTATGAAGGTTTGTCAGGGCTTTATAAAGGAATGAGCACAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAACTGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATGATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTATCTCTGTTAAAAAAAAACACAAAAA] [+] EMBL AU063142 [ TACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAACTGGTGAAGGGCGCTCGATTATTGGTAACCGGCAACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATGATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATACCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTGATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATGATGGTATATATTGGGTAGGCTAaa ] consensusID : consensus_14880#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [AGACTTCAGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGTACATCGCTGGCCTTTATTCTTTAAACTTCATTCCATTATTTACAGTGAATTCTTATTTCATGAGTGATGTTGCTCCATATCCTGTTTCTGATACTCTTTACTTCTCTTCTGGTAATAATATTTGCTGTCCTCTGACTTTGTTACCAAATACGCTATGCAAATTTTATTGCTTGCAGGCACATTTGATGCGATCACAAACATGATACCTTCTGAACGTTTGCCAGGGCTTCTATAAACGAATGACCACAAAAATCGTACCACCTGTTTCTGCTTCTGCTCTCCTTTTCCTGATTA] [+] EMBL CB637438 [AGACTTCAGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGTACATCGCTGGCCTTTATTCTTTAAACTTCATTCCATTATTTACAGTGAATTCTTATTTCATGAGTGATGTTGCTCCATATCCTGTTTCTGATACTCTTTACTTCTCTTCTGGTAATAATATTTGCTGTCCTCTGACTTTGTTACCAAATACGCTATGCAAATTTTATTGCTTGCAGGCACATTTGATGCGATCACAAACATGATACCTTCTGAACGTTTGCCAGGGCTTCTATAAACGAATGACCACAAAAATCGTACCACCTGTTTCTGCTTCTGCTCTCCTTTTCCTGATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14880#0 TTAATTCTCGCGTCGTGTCAGACCACGCTGCCGCGGGGGATCTGCCGGGTGGCGAGGCTG 60 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 ------------------------------------------------------------ consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 CGGAGATGTCGGACGCGCTGATCAACGGCGTCGCCGGCGCCGGCGGCGGGATCATCGCCC 120 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 ------------------------------------------------------------ consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 AGCTCCTCACCTACCCGCTCCAAACCGTGAACGCGCGGCAGCAGACGGAGCGCGACCCCT 180 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 ------------------------------------------------------------ consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 CCAAGCCGGCGTTCAAGGACGGCGCCGTCCGCCAGATGTGCCTGGTGGTGAAGCATGAAG 240 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 ------------------------------------------------------------ consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 GGTGGGAGCGGCTGTACGGCGGCCTCATGCCCTCGCTTGTTGGCACTGCGGCCTCCCAGG 300 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 ------------------------------------------------------------ consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 GTGTCTACTATTACTTCTACCAGATATTCCGGAGCAGGGCGGAGGCCGCGGCTCTCCAGC 360 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 ------------------------------------------------------------ consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 GATCCAGGAGAGGAATCGGCGATGGATCCGTCGGGATGCTCCAATCCCTCACTGTCGCTG 420 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 ------------------------------------------------------------ consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 CGCTTTCTGGATGTGTTAATGTACTTCTCACAAACCCAATTTGGGTAATTGTTACACGAA 480 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 ------------------------------------------------------------ consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 TGCAAACTCACCGGAAGGCAAACAAACAGCAGAGTCCTCTGGATTTGACGTGTGTTCTTG 540 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 ------------------------------------------------------------ consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 ACAAGGCCCTACAAGCTCCCGCTGTTGAAAACATACCTCACAAGACTATCCATGTTATTC 600 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 ------------------------------------------------------------ consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 AGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTA 660 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 ------------------------------------------------------------ consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 TTATGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGAGACTCTTTTGAAGAAGTTGA 720 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 ------------------------------------------------------------ consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 AAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACTGACTGCTCTTGAAATTTTCC 780 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 -------------------------------------------------TTGTGTTTCAT 11 consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 TTCTTGGTGCTGTTGCCAAACTGGGTGCGACTGTTGTTACATATCCTCTTCTAGTTGTGA 840 consensus_14880#3 ------------------------------------------------------------ consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 GATGAGATACTCTATTCTTGCAATTACATGCTGCTGATTACTGGATCCAAGACTAACAGC 71 consensus_14880#2 ------------------------------------------------------------ consensus_14880#0 AGGCAAGACTTCAGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGCA 900 consensus_14880#3 ------------AGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGCA 48 consensus_14880#4 -----AGACTTCAGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAAGGTA 55 consensus_14880#1 TGTTCTTATATGGCAAAAAAGGCCTCATTTATTTTTTCCT-AGGCCTCATCCCACTTCCT 130 consensus_14880#2 -------------------------CATTTAATTTTTCCT-AAGCCTCATCCCAGTTCCT 34 *** * * * * ** * ** consensus_14880#0 CATTTGATGCGATCACAAAGATGATACGTTATGAAGGTTTGTCAGGGCTTTATAAAGGAA 960 consensus_14880#3 CATTTGATGCGATCACAAAGATGATACGTTATGAAGGTTTGTCAGGGCTTTATAAAGGAA 108 consensus_14880#4 CATCGCTGGCCTT-----------TATTCTTTAAACTTCATTCCATTATTTAC-----AG 99 consensus_14880#1 AAACTGTTAGCTCATCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCC---TT 187 consensus_14880#2 AAACTGTTAGCTCAGCTTTTTTTTTTTGTCCCTAAACTGCGGATAAAACCCATCT---TT 91 * * ** * * consensus_14880#0 TGAGCACAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGG 1020 consensus_14880#3 TGAGCACAAAAATCGTACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGG 168 consensus_14880#4 TGAATTCTTATTTCATG---AGTGATGTTGCTCCA--TATCCTGTTTCTGAT-------- 146 consensus_14880#1 CATCTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAG 247 consensus_14880#2 CTTTTCTGAAAACCAAGTAAAACTTGTCCTCCTAAGTACTTCATATAGTCAATATGCAAG 151 * * * * * * * * * consensus_14880#0 AACTGGTGAAGGGCGCTCGATTATTGGTA--ACCGGCAACACCAGCCTTGTTAAGAAGTT 1078 consensus_14880#3 AACTGGTGAAGGGCGCTCGATTATTGGTA--ACCGGCAACACCAGCCTTGTTAAGAAGTT 226 consensus_14880#4 -ACTCTTTA------CTTCTCTTCTGGTA--A----TAATATTTGCTGTCCTCTGACTTT 193 consensus_14880#1 TGCTAATGATTCAAACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTC 307 consensus_14880#2 TGCTAATGATTCAGACTTTGTTTGGGGCATGGTTGATTGACTCCGTTTGGCTGCAGATTC 211 ** * * ** * ** * * * * consensus_14880#0 ACCATCGAAGCCATTAAGATGA--TCTAGG--TTGTACAAGAGTTAGTTCCCTACTTATA 1134 consensus_14880#3 ACCATCGAAGCCATTAAGATGA--TCTAGG--TTGTACAAGAGTTAGTTCCCTACTTATA 282 consensus_14880#4 GTTACCAAATACGCTATGCAAA--TTTTA---TTGCTTGCAGGCACATTTGATGCGATCA 248 consensus_14880#1 ACGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTA 367 consensus_14880#2 AGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTA 271 * * * * * * ** * * * * consensus_14880#0 CCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATC 1194 consensus_14880#3 CCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATC 342 consensus_14880#4 CAAACATGATACCTTCTGAACGTTTGCCAGGGCTTCTATAAACGAATGACCACAAAAATC 308 consensus_14880#1 TTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATT 427 consensus_14880#2 TTATGGTAAGTCTTATGTCGCATTTTCTTTTGCTAAGTTATTTCTTTTTTACAAGTTATT 331 * * * * * * * * ** consensus_14880#0 AAGTTATCTGTGAGACTCTGAT-CGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATG 1253 consensus_14880#3 AAGTTATCTGTGAGACTCTGAT-CGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATG 401 consensus_14880#4 GTACCACCTGT----TTCTGCTTCTGCTCTCCTTTTCCTGATTA---------------- 348 consensus_14880#1 GTTTCCATGTTTCATCTGTCATCAGGTTAGCAACCCTGCAATCCAATTCATGTTGTACGA 487 consensus_14880#2 GTTTCCATGTTTCATCTGTCATCAAGTTAGCAACCCTGCAATCCAATTCATGTTGTACGA 391 * * * * * * consensus_14880#0 TAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAAT--GATGGTATATATTGGGTA 1311 consensus_14880#3 TAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAAT--GATGGTATATATTGGGTA 459 consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 GACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACT 547 consensus_14880#2 GACTCTTTTGAAGAAGTTGAAAAAGAGACGTGCCTCTAATTTGAAGGGAGCTGATGGACT 451 consensus_14880#0 GGCTATCTCTGTTGCTCGTGTAAAGTATACTGTTATGGAAGATTGAAACACTAGAAAATA 1371 consensus_14880#3 GGCTATCTCTGTTA-----AAAAAAAACACAAAAA------------------------- 489 consensus_14880#4 ------------------------------------------------------------ consensus_14880#1 GACTGCTCATGCAGTAAGCCTTCGGCTCATGGGTTAG----------------------- 584 consensus_14880#2 GACTGCTCTTGAAGTAAGCTTTTGGCTTTTTGGCTTTTCTGGTG---------------- 495 consensus_14880#0 AGTTGGCAATGAGAATCGCAAGCGCTAGTCATCTGTTCAGATTAAAAAA 1420 consensus_14880#3 ------------------------------------------------- consensus_14880#4 ------------------------------------------------- consensus_14880#1 ------------------------------------------------- consensus_14880#2 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||