These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 2139 fasta sequence [ATCTAACCCCAGACTTTTCCTCCCCTCCTCCCTCTCCTCCGGCCCCGCCGCCAGAGCCCTTCCAGAAGCTTCCGGAG-CCCGCGCCGCCGATCTGATCGCCGCCGCGTGCCATGGCCGACGAGGCGAAGGCGAAGGGTAATGCGGCCTTCTCGGCCGGCCGCTACGAGGAGGCGGCGCGGCACTTCACTGACGCCATCGCGCTCGCCCCGGGGAACCACGTCCTCTACTCCAACCGCTCCGCCGCGCTCGCCTCGGTCCACCGCTACTCCGAGGCGCTCGCCGACGCCGAGAAGACCGTCGAGCTGAAGCCCGACTGGGCTAAGGGGTACTCCCGCCTCGGAGCCGCCCACCTCGGCCTCGGCGACGCCGCGAGCGCCGTCGCCGCCTACGAGAAGGGCCTCGCCCTCGACCCCACCAACGAGGGCCTTAAGGCCGGCCTCGCCGATGCCAAGAAGGCGGCCGCCGCCCCGCCGCGCCGCCCGCCGCCCAGCGGCGTTGACGGCATAGGCCAGATGTTCCAGGGGCCCGAGCTCTGGACCAAGATCGCCTCCGACCCGACCACGCGCGCATACCTCGAGCAGCCCGACTTCATGCAGATGCTGCGGGATGTGCAGAGGAACCCCAGCAGCCTCAACATGTACCTCTCCGATCCCCGGATGATGCAGGTGCTCGGCCTCATGCTTAACATCAAGATCCAGAGACCAGAGGCCTCTGAATCGTCGCAGCCCAGCTCGTCGCCGCCGTCGCAGCCGCAGGAGCAGCCCGAGGCGAAGGCGAGGGAGGTGGAGCCAGAGCCTGAGCCGGAGCCGATGGAGGTGACCGATGAGGAGAAGGAGCGGAAGGAGAGGAAATCGTCTGCTCAGAAGGAGAAGGAAGCGGGGAACGCAGCTTACAAGAAAAAGGACTTCGAGACCGCGATCCAGCATTACACAAAAGCCATGGAACTTGATGATGAGGACATTTCCTATCTTACCAACCGTGCAGCGGTCTACATTGAGATGGGAAAGTACGATGAATGCGTTAAGGACTGTGATAAGGCTGTGGAGAGGGGAAGGGAACTTCGTGCTGATTTCAAGATGATCTCAAGGGCACTGACAAGAAAAGGAACAGCCCTAGCCAAACTTGCTAAGACCTCTAAGGACTATGACATTGCCATTGAGACTTTCCAGAAGGCTCTAACTGAGCATCGGAATCCAGACACTCTAAAAAAGCTAAATGAGGCTGAGAGGGCAAAGAAAGAGTTGGAGCAACAAGAGTACTATGATCCAAAGTTAGCAGATGAA-GAGAGAGAGAAAGGTAATCAGCTTTTCAAGGAGCAAAAATAT-CCAGACGCGGTAAAGCATTACACTGAGGCTATCAGGAGAAATCCTAAGGACCCGAAGGTGTACAGCAATAGGGCTGCATGCTACACCAAGTTGGGAGCCATGCCTGAAGGTCTTAAAGATGCAGAGAAGTGCATTGAACTAGATCCCACCTTCTCCAAAGGGTATACAA-GGAAA-GGTGCAATTCAGTTTTTCATGAAAGAATATGACAAGGCAATGGAAACTTACCAGGCCGGTTTGAAGCATGATCCGAATAACCCGGAACTGCTGGACGGTGTGA-AAAGGTGTATCGAACAGATCAACAAGGCCAACAGGGGTGATTTGACTCAGGAAGAGATTCAGGAACGACAGAACAAGGCTATGCAGGATCCAGAGATCCAGAATATTCTTACAGATCCCATCATGCGACAGGTACTGGTCGATTTGCAGGAGAACCCTAGGGCTTCTCAGGAGCATCTTAAGAACCCTGGAGTGATGCAGAAGATTCAGAAGCTTGTAAGCGCTGGAATAGTTCAAATGAGATAGTCGACCAAAGCAAGAAGCGCTGTTCGTGTCTA-TGTTCATTGCTCCTTACTTTTTTTCCATGCTCAGTCTTTGTGGACTTAAGATTTACACA-GTTTGGGGCTAATCTTCATTCTCAATTGGATTATGTGAGTG-CAGCGTGTCACTGGATTATTAGTGGTTATGGCATCCGTGCTACAGCTGCACGTGC-AAACGTATGTCTCTATTTGTTAGTCCTAAACATTTTCCCTACCGAATGAAAATAGAGCCATAAGAGGTGCAGAAATAAAAAAGGGATTTTATTTTAAAAAAAAAA] [+] EMBL AK102431 [ATCTAACCCCAGACTTTTCCTCCCCTCCTCCCTCTCCTCCGGCCCCGCCGCCAGAGCCCTTCCAGAAGCTTCCGGAG CCCGCGCCGCCGATCTGATCGCCGCCGCGTGCCATGGCCGACGAGGCGAAGGCGAAGGGTAATGCGGCCTTCTCGGCCGGCCGCTACGAGGAGGCGGCGCGGCACTTCACTGACGCCATCGCGCTCGCCCCGGGGAACCACGTCCTCTACTCCAACCGCTCCGCCGCGCTCGCCTCGGTCCACCGCTACTCCGAGGCGCTCGCCGACGCCGAGAAGACCGTCGAGCTGAAGCCCGACTGGGCTAAGGGGTACTCCCGCCTCGGAGCCGCCCACCTCGGCCTCGGCGACGCCGCGAGCGCCGTCGCCGCCTACGAGAAGGGCCTCGCCCTCGACCCCACCAACGAGGGCCTTAAGGCCGGCCTCGCCGATGCCAAGAAGGCGGCCGCCGCCCCGCCGCGCCGCCCGCCGCCCAGCGGCGTTGACGGCATAGGCCAGATGTTCCAGGGGCCCGAGCTCTGGACCAAGATCGCCTCCGACCCGACCACGCGCGCATACCTCGAGCAGCCCGACTTCATGCAGATGCTGCGGGATGTGCAGAGGAACCCCAGCAGCCTCAACATGTACCTCTCCGATCCCCGGATGATGCAGGTGCTCGGCCTCATGCTTAACATCAAGATCCAGAGACCAGAGGCCTCTGAATCGTCGCAGCCCAGCTCGTCGCCGCCGTCGCAGCCGCAGGAGCAGCCCGAGGCGAAGGCGAGGGAGGTGGAGCCAGAGCCTGAGCCGGAGCCGATGGAGGTGACCGATGAGGAGAAGGAGCGGAAGGAGAGGAAATCGTCTGCTCAGAAGGAGAAGGAAGCGGGGAACGCAGCTTACAAGAAAAAGGACTTCGAGACCGCGATCCAGCATTACACAAAAGCCATGGAACTTGATGATGAGGACATTTCCTATCTTACCAACCGTGCAGCGGTCTACATTGAGATGGGAAAGTACGATGAATGCGTTAAGGACTGTGATAAGGCTGTGGAGAGGGGAAGGGAACTTCGTGCTGATTTCAAGATGATCTCAAGGGCACTGACAAGAAAAGGAACAGCCCTAGCCAAACTTGCTAAGACCTCTAAGGACTATGACATTGCCATTGAGACTTTCCAGAAGGCTCTAACTGAGCATCGGAATCCAGACACTCTAAAAAAGCTAAATGAGGCTGAGAGGGCAAAGAAAGAGTTGGAGCAACAAGAGTACTATGATCCAAAGTTAGCAGATGAA GAGAGAGAGAAAGGTAATCAGCTTTTCAAGGAGCAAAAATAT CCAGACGCGGTAAAGCATTACACTGAGGCTATCGGGAGAAATCCTAAGGACCCGAAGGTGTACAGCAATAGGGCTGCATGCTACACCAAGTTGGGAGCCATGCCTGAAGGTCTTAAAGATGCAGAGAAGTGCATTGAACTAGATCCCACCTTCTCCAAAGGGTATACAA GGAAA GGTGCAATTCAGTTTTTCATGAAAGAATATGACAAGGCAATGGAAACTTACCAGGCCGGTTTGAAGCATGGTCCGAATAACCCGGAACTGCTGGACGGTGTGA AAAGGTGTATCGAACAGATCAACAAGGCCAACAGGGGTGATTTGACTCAGGAAGAGATTCAGGAACGACAGAACAAGGCTATGCAGGATCCAGAGATCCAGAATATTCTTACAGATCCCATCATGCGACAGGTACTGGTCGATTTGCAGGAGAACCCTAGGGCTTCTCAGGAGCATCTTAAGAACCCTGGAGTGATGCAGAAGATTCAGAAGCTTGTAAGCGCTGGAATAGTTCAAATGAGATAGTCGACCAAAGCAAGAAGCGCTGTTCGTGTCTA TGTTCATTGCTCCTTACTTTTTTTCCATGCTCAGTCTTTGTGGACTTAAGATTTACACA GTTTGGGGCTAATCTTCATTCTCAATTGGATTATGTGAGTG CAGCGTGTCACTGGATTATTAGTGGTTATGGCATCCGTGCTACAGCTGCACGTGC AAACGTATGTCTCTATTTGTTAGTCCTAAACATTTTCCCTACCGAATGAAAATAGAGCCA ] [+] EMBL CB646110 [ CCCTCCCCTCTAAGCTCCGGCCCCGCCGCCAGAGCCCTTCCAGAAGCTTCCGGAG CCCGCGCCGCCGATCTGATCGCCGCCGCGTGCCATGGCCGACGAGGCGAAGGCGAAGGGTAATGCGGCCTTCTCGGCCGGCCGCTACGAGGAGGCGGCGCGGCACTTCACTGACGCCATCGCGCTCGCCCCGGGGAACCACGTCCTCTACTCCAACCGCTCCGCCGCGCTCGCCTCGGTCCACCGCTACTCCGAGGCGCTCGCCGACGCCGAGAAGACCGTCGAGCTGAAGCCCGACTGGGCTAAGGGGTACTCCCGCCTCGGAGCCGCCCACCTCGGCCTCGGCGACGCCGCGAGCGCCGTCGCCGCCTACGAGAAGGGCCTCGCCCTCGACCCCACCAACGAGGGCCTTAAGGCCGGCCTCGCCGATGCCAAGAAGGCGGCCGCCGCCCCGCCGCGCCGCCCGCCGCCCAGCGGCGTTGACGGCATAGGCCAGATGTTCCAGGGGCCCGAGCTCTGGACCAAGATCGCCTCCGACCCGACCACGCGCGCATACCTCGAGCAGCCCGACTTCATGCAGATGCTGCGGGATGTGCAGAGGAACCCCAGCAGCCTCAACATGTACCTCTCCGATCCCCGGATGATGCAGGTGCTCGGCCTCATGCTTAACATCAAGATCCAGAGACCAGAGGCCTCTGAATCGTCGCAGCCCAGCTCGTCGCCGCCGTCGCAGCCGCAGGAGCA ] [+] EMBL CB624320 [ CCCTCCTCCCTCTCCTCCGGCCCCGCCGCCAGAGCCCTTCCAGAAGCTTCCGGAG CCCGCGCCGCCGATCTGATCGCCGCCGCGTGCCATGGCCGACGAGGCGAAGGCGAAGGGTAATGCGGCCTTCTCGGCCGGCCGCTACGAGGAGGCGGCGCGGCACTTCACTGACGCCATCGCGCTCGCCCCGGGTAACCACGTCCTCTACTCCAACCGCTCCGCCGCGCTCGCCTCGGTCCACCGCTACTCCGAGGCGCTCGCCGACGCCGAGAAGACCGTCGAGCTGAAGCCCGACTGGGCTAAGGGGTACTCCCGCCTCGGAGCCGCCCACCTCGGCCTCGGCGACGCCGCGAGCGCCGTCGCCGCCTACGAGAAGGGCCTCGCCCTCGACCCCACCAACGAGGGCCTTAAGGCCGGCCTCGCCGATGCCAAGAAGGCGGCCGCCGCCCCGCCGCGCCGCCCGCCGCCCAGCGGCGTTGACGGCATAGGCCAGATGTTCCAGGGGCCCGAGCTCTGGACCAAGATCGCCTCCGACCCGACCACGCGCGCATACCTCGAGCAGCCCGACTTCATGCAGATGCTGCGGGATGTGCAGAGGAACCCCAGCAGCCTCAACATGTACCTCTCCGATCCCCGGATGATGCAGGTGCTCGGCCTCATGCTTAACATCAAGATCCAGAGACCAGAGGCCTCTGAATCGTCGCAGCCCAGCTCGTCGCCGCC ] [+] EMBL C29139 [ TCCCTCTCCTCCGGCCCCGCCGCCAGAGCCCTTCCAGAAGCTTCCGGAG CCCGCGCCGCCGATCTGATCGCCGCCGCGTGCNATGGCCGACGAGGCGAAGGCGAAGGGTAATGCGGCCTTCTCGGCCGGCCGCTACGAGGAGGCGGCGCGGCACTTCACTNACGNCATCGCGCTCGCCCCGGGGAACCACGTCCTCTAC ] [+] EMBL OS40143 [ ctCAGAGCCCTTCCAGAAGCTTCCGGAGTCCCGCGCCGCCGATCTGATCGCCGCCGCGTGCCATGGCCGACGAGGCGAAGGCGAAGGGTAATGCGGCCTTCTCGGCCGGCCGCTACGAGGAGGCGGCGC GCACTTCACTGACGCCATCGCGCT ] [+] EMBL C26452 [ AAGTACGATGAATGCATTAAGGACTGTNATAAGGCTGTGGAGAGGGGAAGGGAACTTCGTGCTGATTTCAAGATGATCTCAAGGGCACTGACAAGAAAAGGAACAGCCCTAGCCAAACTTGCTAAGACCTCTAAGGACTATNACATTGCCATTGAGACTTTCCAGAAGGCTCTAACTGAGCATCGGAATCCAGACACTCTAAAAAAGCTAAATNAGGCTGAGAGGGCAAAGAAAGAGTTGGAGCAACAAGAGTACTATGATCCAAAGTTAGCAGATGAAGGAGAGAGAGAAAGGTAATCAGCTTTTCAAGGAGCAAAAATAT CCAGGCGCGGTAAAGCATTACACTGAGGCTATCAGGNG AATCCTAAGGACCCG ANGTGTACAGCAATAGGGCTGCATGCTNCACCAAGTTNGGAGCCATGCCTa ] [+] EMBL CF323675 [ CAAGGGCACTGACAAGAAAAGGAACAGCCCTAGCCAAACTTGCTAAGACCTCTAAGGACTATGACATTGCCATTGAGACTTTCCAGAAGGCTCTAACTGAGCATCGGAATCCAGACACTCTAAAAAAGCTAAATGAGGCTGAGAGGGCAAAGAAAGAGTTGGAGCAACAAGAGTACTATGATCCAAAGTTAGCAGATGAA GAGAGAGAGAAAGGTAATCAGCTTTTCAAGGAGCAAAAATAT CCAGACGCGGTAAAGCATTACACTGAGGCTATCAGGAGAAATCCTAAGGACCCGAAGGTGTACAGCAATAGGGCTGCATGCTACACCAAGTTGGGAGCCATGCCTGAAGGTCTTAAAGATGCAGAGAAGTGCATTGAACTAGATCCCACCTTCTCCAAAGGGTATACAAGGGAAAGGGTGCAATTCAGTTTTTCATGAAAGAATATGACAAGGCAATGGAAACTTACCAGGCCGGTTTGAAGCATGATCCGAATA ] [-] EMBL CB663561 [ GAAAGAGTTGGAGCAACAAGAGTACTATGATCCAAAGTTAGCAGATGAA GAGAGAGAGAAAGGTAATCAGCTTTTCAAGGAGCAAAAATAT CCAGACGCGGTAAAGCATTACACTGAGGCTATCAGGAGAAATCCTAAGGACCCGAAGGTGTACAGCAATAGGGCTGCATGCTACACCAAGTTGGGAGCCATGCCTGAAGGTCTTAAAGATGCAGAGAAGTGCATTGAACTAGATCCCACCTTCTCCAAAGGGTATACAA GGAAA GGTGCAATTCAGTTTTTCATGAAAGAATATGACAAGGCAATGGAAACTTTCCAGGCCGGTTTGAAGCATGATCCGAATAACCCGGAACTGCTGGACGGTGTGA AAAGGTGTATCGAACAGATCAACAAGGCCAACAGGGGTGATTTGACTCAGGAAGAGATTCAGGAACGACAGAACAAGGCTATGCAGGATCCAGAGATCCAGAATATTTTTACAGATCCCATCATGCGACAGGTACTGGTCGATTTGCAGGAGAACCCTAGGGCTTTTCAGGAGCATCTTAAGAACCCTGGAGTGATGCAGAAGATTCAGAAGCTTGTAAGCGCTGGAATAGTTCAAATGAGATAGTCGCCCAAAGCAAGAAGCGCTGTTCGTGTCTA TGTTCATTGCTCCTTACTTTTTTTCCACGTTCAGTCTTTGGGGACTTAAGATTTACTCA GTGGGGGGCTAATTTTCATTGTC ] [-] EMBL CB646111 [ TAGCAGATGAA GAGAGAGAGAAAGGTATTCAGCTTTTCAAGGAGCAAAAATAT CCAGACGCGGTAAAGCATTACACTGAGGCTATCAGGAGAAATCCTAAGGACCCGAAGGTGTACAGCAATAGGGCTGCATGCTACACCAAGTTGGGAGCCATGCCTGAAGGTCTTAAAGATGCAGAGAAGTGCATTGAACTAGATCCCACCTTCTCCAAAGGGTATACAA GGAAA GGTGCAATTCAGTTTTTCATGAAAGAATATGACAAGGCAATGGAAACTTACCAGGCCGGTTTGAAGCATGATCCGAATAACCCGGAACTGCTGGACGGTGTGA AAAGGTGTATCGAACAGATCAACAAGGCCAACAGGGGTGATTTGACTCAGGAAGAGATTCAGGAACGACAGAACAAGGCTATGCAGGATCCAGAGATCCAGAATATTCTTACAGATCCCATCATGCGACAGGTACTGGTCGATTTGCAGGAGAACCCTAGGGCTTCTCAGGAGCATCTTAAGAACCCTGGAGTGATGCAGAAGATTCAGAAGCTTGTAAGCGCTGGAATAGTTCAAATGAGATAGTCGACCAAAGCAAGAAGCGCTGTTCGTGTCTA TGTTCATTGCTCCTTACTTTTTTTCCATGCTCAGTCTTTGTGGACTTAAGATTTACACA GTTTGGGGCTAATCTTCATTCTCAATTGGATTATGTGAGTG CAGCGTGTCACTGGATTATTAGTGGTTAGGGCATCCGTGCTACAGCTGCACGTGC AAACGTATGTCTCTATTTGTTAGTCCTAAACATTTTCCCTTCCG AGGAAAATAGACCCATAAGAGG ] [-] EMBL CB624321 [ GAGAAAGGTAATCAGCTTTGCAAGGAGCAAAAATAT CCAGACGCGGTAAAGCATTACACTGAGGCTATCAGGAGAAATCCTAAGGACCCGAAGGTGTACAGCAATAGGGCTGCATGCTACACCAAGTTGGGAGCCATGCCTGAAGGTCTTAAAGATGCAGAGAAGTGCATTGAACTAGATCCCACCTTCTCCAAAGGGTATACAA GGAAA GGTGCAATTCAGTTTTTCATGAAAGAATATGACAAGGCAATGGAAACTTACCAGGCCGGTTTGAAGCATGATCCGAATAACCCGGAACTGCTGGACGGTGTGA AAAGGTGTATCGAACAGATCAACAAGGCCAACAGGGGTGATTTGACTCAGGAAGAGATTCAGGAACGACAGACCAAGGCTATGCAGGATCCAGAGATCCAGAATATTCTTACAGATCCCATCATGCGACAGGTACTGGTCGATTTGCAGGAGAACCCTAGGGCTTCTCAGGAGCATCTTAAGAACCCTGGAGTGATGCAGAAGATTCAGAAGCTTGTAAGCGCTGGAATAGTTCAAATGAGATAGTCGACCAAAGCAAGAAGCGCTGTTCGTGTCTA TGTTCATTGCTCCTTACTTTTTTTCCATGCTCAGTCTTTGTGGACTTAAGATTTACACA GTTTGGGGCTAATCTTCATTCTCAATTGGATTATGTGAGTG CAGCGTGTCACTGGATTATTAGTGGTTATGGCATCCGTGCTACAGCTGCACGGGC AAACGTATGTCTCTATTTGTTAGTCCTAAACATTTTCCCTACCGAATGAAAATATTGCCATAAGAGGTGCAGCAATAAAAAAGGGA ] [-] EMBL C27395 [ CAAGGAGCAACNATATCCCAGACGCGGTTAANCATTACACTGAGGCTATCAGGAGAAATCCTAAGGACCCGAAGNTGTACAGCAATAGGGCTGCATGCTACACCAAGTTGGGAGCCATGCCTGAAGGTCTTAAAGATGCAGAGAAGTGCATTGAACTAGATCCCACCTTCTCCAAAGGGTATACAA GGAAA GGTGCAATTCAGTTTTTCATGANAGAATATGACAAGGCAATGGAAACTTACCAGGCCGGTTTGAAGCATGATCCGAATAACCCGGAACTGCTGGACGGTGTGA AAAGGTGTATCGAACAGATCAACAAGGCCAACAGGGGTGATTTGACTCAGGAAGAGATTCAGGAACGAC ] [+] EMBL BQ906675 [ CAGGCCGGTTTGAAGCATGATCCGAATAACCCGGAACTGCTGGACGGTGTGAGAAAGGTGTATCGAACAGATCAACAAGGCCAACAGGGGTGATTTGACTCAGGAAGAGATTCAGGAACGACAGAACAAGGCTATGCAGGATCCAGAGATCCAGAATATTCTTACAGATCCCATCATGCGACAGGTACTGGTCGATTTGCAGGAGAACCCTAGGGCTTCTCAGGAGCATCTTAAGAACCCTGGAGTGATGCAGAAGATTCAGAAGCTTGTAAGCGCTGGAATAGTTCAAATGAGATAGTCGACCCAAGCAAGAAGCGCTGTTCGTGTCTACTGTTCATTGCTCCTTACTTTTTTTCCATGCTCAGTCTTTGTGGACTTAAGATTTACACA GTTTGGGGCTAATCTTCATTCTCAATTGGATTATGTGAGTG CAGCGTGTCACTGGATTATTAGTGGTTATGGCATCCGTGCTACAGCTGCACGGGC AAACGTATGTCTCTATTTGTTAGTCCTAAACATTTTCCCTACCGAATGAAAATATTGCCATAAGAGGTTCAGAAATAAAAAAaa ] [+] EMBL BI797703 [ GTATCGAACAGATCAACAAGGCCAACAGGGGTGATTTGACTCAGGAAGAGATTCAGGAACGACAGAACAAGGCTATGCAGGATCCAGAGATCCAGAATATTCTTACAGATCCCATCATGCGACAGGTACTGGTCGATTTGCAGGAGAACCCTAGGGCTTCTCAGGAGCATCTTAAGAACCCTGGAGTGATGCAGAAGATTCAGAAGCTTGTAAGCGCTGGAATAGTTCAAATGAGATAGTCGACC AAGCAAGAAGCGCTGTTCGTGTCTA TGTTCATTGCTCCTTACTTTTTTTCCATGCTCAGTCTTTGTGGACTTAAGATTTACACA GTTTGGGGCTAATCTTCATTCTC ATTGGATTATGTGAGTG CAGCGTGTCACTGGATTATTAGTGGTTATGGCATCCGTGCTACAGCTGCACGGGC AAACGTATGTCTCTATTTGTTAGTCCTAAACATTTTCCCTACCGAATGAAAATATTGCCATAAGAGGT CAGAAATAAAAA ] [+] EMBL AK059659 [ GATCCCATCATGCGACAGGTACTGGTCGATTTGCAGGAGAACCCTAGGGCTTCTCAGGAGCATCTTAAGAACCCTGGAGTGATGCAGAAGATTCAGAAGCTTGTAAGCGCTGGAATAGTTCAAATGAGATAGTCGACCAAAGCAAGAAGCGCTGTTCGTGTCTA TGTTCATTGCTCCTTACTTTTTTTCCATGCTCAGTCTTTGTGGACTTAAGATTTACACA GTTTGGGGCTAATCTTCATTCTCAATCGGATTATGTGAGTG CAGCGTGTCACTGGATTATTAGTGGTTATGGCATCCGTGCTACAGCTGCACGTGC AAACGTATGTCTCTATTTGTTAGTCCTAAACATTTTCCCTACCGAATGAAAATAGAGCCATAAGAGGTGCAGAAATAgtc ] [+] EMBL AU092316 [ TTTGCAGGAGAACCCTAGGGCTTCTCAGGAGCATCTTAAGAACCCTGGAGTGATGCAGAAGATTCAGAAGCTTGTAAGCGCTGGAATAGTTCAAATGAGATAGTCGACCAAAGCAAGAAGCGCTGNTCGTGTCTA TGTNCATTGCTCCTTACTTTTTTTCCATGCTCAGTCTTTGTGGACTTAAGATTTACACA GTTTGGGGCTAATCTTCATTCTCAATTGGATTATGTGAGTG CAGCGTGTCACTGGATTATTAGTGGTTATGGNATCCGTGCTACAGCTGCACGTGC AAACGTATGTCTCTATTTGTTAGTCCTAAACATTTTCCCTNCCGAATGAAAATAGAGCCATAAGAGGTGCAGA ] [+] EMBL BI800058 [ TTCAGAAGCTTGTAAGCGCTGGAATAGTTC AATGAGATAGTCGACC AAGC AGAAGCGCTGTTCGTGTCTA TGTTCATTGCTCCTTACTTTTTTTCCATGCTCAGTCTTTGTGGACTTAAGATTTACACACGTTTGGGGCTAATCTTCATTCTC ATTGGATTATGTGAGTG CAGCGTGTCACTGGATTATTAGTGGTTATGGCATCCGTGCTACAGCTGCACGGGC AACGTATGTCTCTATTTGTTAGTCCTAAACATTTTCCCTACCGAATGAAAATATTGCCATAAGAGGTGCAGAAATAGTCGATTGCTTTTATTTTAAAAAAAAAA] [-] EMBL AA750366 [ aACCAAAGC AGAAGCGCTGTTCGTGTCTA TGTTGA CTCCTTACTTTTTTTCCATGCTCAGTCTTTGTGGANTTAAGATTTACACA GTTTGGGGCTAATCTTCATTCTCAATTGGATTATGTGAGNGACAGCGTGTCACTGGATTATTAGTGGTTATGGNAT CGTGCTACAGCTGCACGNGCAAAACGTATGTCTCTATTTGTTAGTCCTAAACATTTTCCCT ] consensusID : consensus_14885#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [ATGGATTGAAGGAGTAGAAATGGATTATGTGAGTGCAGCGTGTCACTGGATTATTAGTGGTTATGGCATCCGTGATACAGCTGCACGTGCAAACGTATGTATCTATTTGTTAGTCCTAAACATTTTCCAAACAAAATAAAAATAGAGCCATAAAAGGAACAAAAAAAAAAAAAAAAAACACTGTCATGCCGCTCTGTCATGCCGTTACGTAACCA] [-] EMBL CF327816 [ATGGATTGAAGGAGTAGAAATGGATTATGTGAGTGCAGCGTGTCACTGGATTATTAGTGGTTATGGCATCCGTGATACAGCTGCACGTGCAAACGTATGTATCTATTTGTTAGTCCTAAACATTTTCCAAACAAAATAAAAATAGAGCCATAAAAGGAACAAAAAAAAAAAAAAAAAACACTGTCATGCCGCTCTGTCATGCCGTTACGTAACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14885#0 ATCTAACCCCAGACTTTTCCTCCCCTCCTCCCTCTCCTCCGGCCCCGCCGCCAGAGCCCT 60 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 TCCAGAAGCTTCCGGAGCCCGCGCCGCCGATCTGATCGCCGCCGCGTGCCATGGCCGACG 120 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 AGGCGAAGGCGAAGGGTAATGCGGCCTTCTCGGCCGGCCGCTACGAGGAGGCGGCGCGGC 180 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 ACTTCACTGACGCCATCGCGCTCGCCCCGGGGAACCACGTCCTCTACTCCAACCGCTCCG 240 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 CCGCGCTCGCCTCGGTCCACCGCTACTCCGAGGCGCTCGCCGACGCCGAGAAGACCGTCG 300 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 AGCTGAAGCCCGACTGGGCTAAGGGGTACTCCCGCCTCGGAGCCGCCCACCTCGGCCTCG 360 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 GCGACGCCGCGAGCGCCGTCGCCGCCTACGAGAAGGGCCTCGCCCTCGACCCCACCAACG 420 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 AGGGCCTTAAGGCCGGCCTCGCCGATGCCAAGAAGGCGGCCGCCGCCCCGCCGCGCCGCC 480 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 CGCCGCCCAGCGGCGTTGACGGCATAGGCCAGATGTTCCAGGGGCCCGAGCTCTGGACCA 540 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 AGATCGCCTCCGACCCGACCACGCGCGCATACCTCGAGCAGCCCGACTTCATGCAGATGC 600 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 TGCGGGATGTGCAGAGGAACCCCAGCAGCCTCAACATGTACCTCTCCGATCCCCGGATGA 660 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 TGCAGGTGCTCGGCCTCATGCTTAACATCAAGATCCAGAGACCAGAGGCCTCTGAATCGT 720 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 CGCAGCCCAGCTCGTCGCCGCCGTCGCAGCCGCAGGAGCAGCCCGAGGCGAAGGCGAGGG 780 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 AGGTGGAGCCAGAGCCTGAGCCGGAGCCGATGGAGGTGACCGATGAGGAGAAGGAGCGGA 840 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 AGGAGAGGAAATCGTCTGCTCAGAAGGAGAAGGAAGCGGGGAACGCAGCTTACAAGAAAA 900 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 AGGACTTCGAGACCGCGATCCAGCATTACACAAAAGCCATGGAACTTGATGATGAGGACA 960 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 TTTCCTATCTTACCAACCGTGCAGCGGTCTACATTGAGATGGGAAAGTACGATGAATGCG 1020 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 TTAAGGACTGTGATAAGGCTGTGGAGAGGGGAAGGGAACTTCGTGCTGATTTCAAGATGA 1080 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 TCTCAAGGGCACTGACAAGAAAAGGAACAGCCCTAGCCAAACTTGCTAAGACCTCTAAGG 1140 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 ACTATGACATTGCCATTGAGACTTTCCAGAAGGCTCTAACTGAGCATCGGAATCCAGACA 1200 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 CTCTAAAAAAGCTAAATGAGGCTGAGAGGGCAAAGAAAGAGTTGGAGCAACAAGAGTACT 1260 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 ATGATCCAAAGTTAGCAGATGAAGAGAGAGAGAAAGGTAATCAGCTTTTCAAGGAGCAAA 1320 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 AATATCCAGACGCGGTAAAGCATTACACTGAGGCTATCAGGAGAAATCCTAAGGACCCGA 1380 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 AGGTGTACAGCAATAGGGCTGCATGCTACACCAAGTTGGGAGCCATGCCTGAAGGTCTTA 1440 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 AAGATGCAGAGAAGTGCATTGAACTAGATCCCACCTTCTCCAAAGGGTATACAAGGAAAG 1500 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 GTGCAATTCAGTTTTTCATGAAAGAATATGACAAGGCAATGGAAACTTACCAGGCCGGTT 1560 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 TGAAGCATGATCCGAATAACCCGGAACTGCTGGACGGTGTGAAAAGGTGTATCGAACAGA 1620 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 TCAACAAGGCCAACAGGGGTGATTTGACTCAGGAAGAGATTCAGGAACGACAGAACAAGG 1680 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 CTATGCAGGATCCAGAGATCCAGAATATTCTTACAGATCCCATCATGCGACAGGTACTGG 1740 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 TCGATTTGCAGGAGAACCCTAGGGCTTCTCAGGAGCATCTTAAGAACCCTGGAGTGATGC 1800 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 AGAAGATTCAGAAGCTTGTAAGCGCTGGAATAGTTCAAATGAGATAGTCGACCAAAGCAA 1860 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 GAAGCGCTGTTCGTGTCTATGTTCATTGCTCCTTACTTTTTTTCCATGCTCAGTCTTTGT 1920 consensus_14885#1 ------------------------------------------------------------ consensus_14885#0 GGACTTAAGATTTACACAGTTTGGGGCTAATCTTCATTCTCAATTGGATTATGTGAGTGC 1980 consensus_14885#1 --------------------ATGGATTGAAGGAGTAG----AAATGGATTATGTGAGTGC 36 *** ** * ** **************** consensus_14885#0 AGCGTGTCACTGGATTATTAGTGGTTATGGCATCCGTGCTACAGCTGCACGTGCAAACGT 2040 consensus_14885#1 AGCGTGTCACTGGATTATTAGTGGTTATGGCATCCGTGATACAGCTGCACGTGCAAACGT 96 ************************************** ********************* consensus_14885#0 ATGTCTCTATTTGTTAGTCCTAAACATTTTCCCTACCGAATGAAAATAGAGCCATAAGAG 2100 consensus_14885#1 ATGTATCTATTTGTTAGTCCTAAACATTTTCCAAACAAAATAAAAATAGAGCCATAAAAG 156 **** *************************** ** *** *************** ** consensus_14885#0 GTGCAGAAATAAAAAAGGGATTTTATTTTAAAAAAAAAA-------------------- 2139 consensus_14885#1 GAACAAAAAAAAAAAAAAAAAACACTGTCATGCCGCTCTGTCATGCCGTTACGTAACCA 215 * ** *** ****** * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||