These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1331 fasta sequence [TCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACTTTTGTTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTTGCTTGGTGGGCCGGGAATGCCAGACTTATCAATTTGTCGGGTAAACTACTTGGAGCTCACGTAGCCCATGCAGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCCCATTTCGTACCAGAAAAACCCATGTATGAACAAGGGTTGATTTTACTTCCGCACTTAGCTACTCTAGGTTGGGGAGTAGGGCCCGGGGGAGAAGTTCTAGATACTTTTCCGTACTTTGTATCTGGAGTACTTCATCTAATTTCCTCCGCAGTCTTAAGCTTCGGTGGCATTTATCACGCGCTTCTGGGACCGGAGACTCTTGAAGAATCTTTTCCATTCTTTGGTTATGTGTGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCACCTAATTTTGTTAGGTATAGGTGCTTTTCTTCTAGTACTCAAAGCTCTTTATTTTGGCGGTATATATGATACCTGGGCTCCTGGGGGAGGAGATGTAAGAAAAATTACCAATTTGACCCTTAGCCCCGGTGTTATATTTGGTTATTTACTAAAATCCCCTTTTGGGGGAGAGGGTTGGATTGTTAGTGTGGATGATTTAGAAGATATAATTGGGGGACATGTATGGTTGGGTTTCATTTGTGTATTTGGCGGAATTTGGCATATCTTAACCAAACCCTTCGCATGGGCTCGCCGTGCATTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGCGCTTTATCTGTCTTTGGGTTTTATCGCTTGTTGTTTTGTCTGGTTCAATAATACAGCTTATCCGAGGTGAGTTTTATGGACCTACTGGGCCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGATCAGCGTCTTGGAGCTAATGTGGGATCTGCCCAAGGACCCACAGGTTTAGGTAAATATCTAATGCGTTCCCCAACGGGAGAGGTTATTTTTGGAGGGGAAACTATGCGTTTTTGGGACCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGGTTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTNNNNTCTGTGGGTGGCGNNNNTACCGAGATCAATGCAGTTAATTATGTTTCTCCTNNNNGTTGGNNNNNGACTTCCCATNNNGNTCTAGGATTCTTCTTTTTTGTGGGCCANNNNNNGCATGCANNNNNNNNN] [+] EMBL CB640978 [TCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACTTTTGTTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTTGCTTGGTGGGCCGGGAATGCCAGACTTATCAATTTGTCGGGTAAACTACTTGGAGCTCACGTAGCCCATGCAGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCCCATTTCGTACCAGAAAAACCCATGTATGAACAAGGGTTGATTTTACTTCCGCACTTAGCTACTCTAGGTTGGGGAGTAGGGCCCGGGGGAGAAGTTCTAGATACTTTTCCGTACTTTGTATCTGGAGTACTTCATCTAATTTCCTCCGCAGTCTTAAGCTTCGGTGGCATTTATCACGCGCTTCTGGGACCGGAGACTCTTGAAGAATCTTTTCCATTCTTTGGTTATGTGTGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCACCTAATTTTGTTAGGTATAGGTGCTTTTCTTCTAGTACTCAAAGCTCTTTATTTTGGCGGTATATATGATAC ] [+] EMBL AU162901 [ CTTCTAGTACTCAAAGCTCTTTATTTTGGCGGTATATATGATACCTGGGCTCCTGGGGGAGGAGATGTAAGAAAAATTACCAATTTGACCCTTAGCCCCGGTGTTATATTTGGTTATTTACTAAAATCCCCTTTTGGGGGAGAGGGTTGGATTGTTAGTGTGGATGATTTAGAAGATATAATTGGGGGACATGTATGGTTGGGTTTCATTTGTGTATTTGGCGGAATTTGGCATATCTTAACCAAACCCTTCGCATGGGCTCGCCGTGCATTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGCGCTTTATCTGTCTTTGGGTTTTATCGCTTGTTGTTTTGTCTGGTTCAATAATACAGCTTATCCGAGGTCAGTTTTATGGACCNACTGGGCCAGAAGCTTCTCAAGNTCAAGCATTTACTTT ] [+] EMBL CF294180 [ GGGCTCGCCGTGCATTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGCGCTTTATCTGTCTTT GGTTTTATCGCTTGTTGTTTTGTCTGGTTCAATAATACAGCTTATCC TTTTGAGTTTTATGGACCTACTGTTTCAGAAGCTTCTCAAGCTCATTCATTTACTTTTCTAGTTAGAGATCAGCGTCTTGGAGCTAATGTGGGATCTGCCCAAGGACCCACAGGTTTAGGTAAATATCTAATGCGTTCCCCAACGGGAGAGGTTATTTTTGGAGGGGAAACTATGCGTTTTTGGGACCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTG ] [+] EMBL CF196201 [ CTGGTTCAATAATACAGCTTATCCGA GTGAGTTTTATGGACCTACTGGGCCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGATCAGCGTCTTGGAGCTAATGTGGGATCTGCCCAAGGACCCACAGGTTTAGGTAAATATCTAATGCGTTCCCCAACGGGAGAGGTTATTTTTGGAGGGGAAACTATGCGTTTTTGGGACCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGGTTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTNNNNTCTGTGGGTGGCGNNNNTACCGAGATCAATGCAGTTAATTATGTTTCTCCTNNNNGTTGGNNNNNGACTTCCCATNNNGNTCTAGGATTCTTCTTTTTTGTGGGCCANNNNNNGCATGCANNNNNNNNN] consensusID : consensus_14893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 616 fasta sequence [TCGCTCTTGACTAATGTGGGATCTGCCCAAGACCCA-GGTGTAGTAATATCTAATGCGTTCCCC-ACGGGAGAGG-TA-TTTTGGA--GGGGAAA-CTAT-GCGTT-TTT--GGGA-CCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGG-TTGAAAAAAGACAT-ACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTA-CCGA-GA-TCAATGCAGTT-AATTATGT-TT-CTCCTAGA-AGTTGGTTAGCGACTTCCCA-TTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT-TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAAC-AACGTATTCAATACGCAAAAAAAAAAAAAAAAAAAANA] [+] EMBL BI807691 [TCGCTCTTGACTAATGTGGGATCTGCCCAAGACCCA GGTGTAGTAATATCTAATGCGTTCCCC AC GGAGAGG TA TTTTGGA GGGAAA CTAT GCGTT TTT GGGA CCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGGTTTGAAAAAAGACAT ACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTA CCGA GA TC ATGCAGTT AATTATGT TT CTCCTAGA AGTTGGTTAGCGACTTCCCA TTTTGTTCTAGGATTCTTCTTTTTTGT GGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAAC AACGTATTCAATACGCAAAA ] [+] EMBL BM419847 [ aattGGATCGCCCCAAGACCCACAGTTTAGTAATATCTAATGCGTTCCCCAACGGGAGAGG TATTTTTGGA GGGGAAA CTAT GCGTT TTT GGGA CCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGG TTGAAAAAAGACAT ACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTA CCGA GA TCAATGCAGTT AATTATGT TT CTCCTAGA AGTTGGTTAGCGACTTCCCA TTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAAC AATAAAGAAAC AACGTATTC ATACGCAAAAA ] [-] EMBL CF294179 [ CCA ACGGGAGAGGTTATTTTTGGA GGGGAAA CTAT GCGTT TTT GGGA CCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGG TTGAAAAAAGACAT ACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTA CCGA GA TCAATGCAGTT AATTATGT TT CTCCTAGA AGTTGGTTAGCGACTTCCCA TTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAA ] [+] EMBL BI811523 [ gtttaat tt TTTTGGACGGGGGAAACCTATGGCGTTGTTTGGGGGACCCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTA G TTGAAAAAAGACATGACAACCTTGGCAAGAACGACGTTC GCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTA CCGA GA TCAAT CAGTT AATTATGT TT CTCCTAGA AGTTGGTTAGCGACTTCCCA TTTTGTTCTAGGATTCTTCTTTTTTGT GGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAAC AACGTATTCAATACGCAAAA ] [+] EMBL BE229535 [ cgagATGGYTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGG TTGAAAAAAGACAT ACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTA STA CCGA GA TCAATGCAGTT AATTATGT TT CTCCTAGA AGTTGGTTAGCGACTTCCCA TTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCSGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCC TTCTATGAAAGAAAGATAAGGGGMCAGAACAAAAAAA ] [+] EMBL CF589229 [ GGACTTGAGTAGG TTGAAAAAAGACAT ACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTA CCGA GA TCAATGCAGTT AATTATGT TT CTCCTAGA AGTTGGTTAGCGACTTCCCA TTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAACAAACGTA ] [+] EMBL BI809954 [ GTGGCGTAGCTAGCCGAGGAGTCAATGCAGTTGAATTATGTGTTGCTCCTAGAGAGTTGGTTAGCGACTTCCCAGTTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGTGTTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAAC AACGTATTC ATACGCAAAAA ] [+] EMBL BI798747 [ ATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAAC AAAAAAAC AATAAAGAAAC AACGTATTCAATACGCAAAA ] [+] EMBL BI798364 [ ATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAAC AAAAAAACCCATAAAGAAAC AACGTATTC ATACGCAAAA ] [+] EMBL AU181103 [ TTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAACCAAATAAAGAACA AACGTATTCAATACGCAAAAAAAAAAAAAAAAAAAANA] consensusID : consensus_14893#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [GGNGNTTTGGGGGGGGGGGNGNCCAAAACNACCCTTTCCCGGGGGGGTTTTAAAAAGGGAAAAGTTCCNAANGAAGGGGCGGGGCAAAAAATATGGGGTGGTTAATTTTTGGNNCCNGGGTNAAATTNGTTTCGGTTTNNATTNGGGGGATGGGGGGGAAAAANTTAAAACGGAAANNGTTGGNCCNGANAACCCCAAGTTGGAATTAACCNTCAATAAAGGAACAAANGNGGGGTTCCCCNGCGGNGGGGCCGTTTTAGAAANAGNGNATCCCCCGGGCNGCNGGAANTCGGAAGGAGGAAGNNCCNGGGNTGTGCAGCAGGATTTGAAAAGGGANTNGATTGNGATTTGGAGCCTGTTTTTNANANGACCCCTTTTAANTAAGATTTTTTTATTTANACCTGTTNTACTGTTTTTTTNTGTTNTGGNTCGGTTATTTTATTTAGCCGAGCCATTCATTCCTTTTTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAACAAACGTATTCAATACGCAAAAGAAAAGAGAGGAGGATGTGAAGAAAGAAGATATTTACCACC] [-] EMBL BE229232 [GGNGNTTTGGGGGGGGGGGNGNCCAAAACNACCCTTTCCCGGGGGGGTTTTAAAAAGGGAAAAGTTCCNAANGAAGGGGCGGGGCAAAAAATATGGGGTGGTTAATTTTTGGNNCCNGGGTNAAATTNGTTTCGGTTTNNATTNGGGGGATGGGGGGGAAAAANTTAAAACGGAAANNGTTGGNCCNGANAACCCCAAGTTGGAATTAACCNTCAATAAAGGAACAAANGNGGGGTTCCCCNGCGGNGGGGCCGTTTTAGAAANAGNGNATCCCCCGGGCNGCNGGAANTCGGAAGGAGGAAGNNCCNGGGNTGTGCAGCAGGATTTGAAAAGGGANTNGATTGNGATTTGGAGCCTGTTTTTNANANGACCCCTTTTAANTAAGATTTTTTTATTTANACCTGTTNTACTGTTTTTTTNTGTTNTGGNTCGGTTATTTTATTTAGCCGAGCCATTCATTCCTTTTTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAACAAACGTATTCAATACGCAAAAGAAAAGAGAGGAGGATGTGAAGAAAGAAGATATTTACCACC] consensusID : consensus_14893#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [CGAGAHCNNNVGAGGTTATTTTTTGGAGGGGAAACTATGCGTTTTTGGRGACCTHTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGGTTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAWATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTASTACCGAGATCAATGCAGTTAATTATGTTTCTCCTAGAAGTTGGTTAGCGACTTCCCATTTTGTTCTAGGATTCTTCTTTTTTGTGGGCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGTTTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGADAGATAAGGGGCCAGAACAAAAAAACAA] [+] EMBL AA754448 [CGAGAHCNNNVGAGGTTATTTTTTGGAGGGGAAACTATGCGTTTTTGGRGACCTHTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGGTTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAWATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTASTACCGAGATCAATGCAGTTAATTATGTTTCTCCTAGAAGTTGGTTAGCGACTTCCCATTTTGTTCTAGGATTCTTCTTTTTTGTGGGCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGTTTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGADAGATAAGGGGCCAGAACAAAAAAACAA] consensusID : consensus_14893#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [GCCCCCAACCGTTTTGGACTTGAGTAGTTTGAAAAAAGACATCACAACCTTGCCAAGAACGACGTTCGCCAGAATATATGACCCATGGCTCCTTTAGGCTCTTGTGAAATTCTGTGGGGTGGCGTAAGCTACCGAGATCAAATGCCAGTTAATTATGGTTTCTCCTAGAAGTTGGTTAGCGACTTGCCCATTTTGGTTCTAGGATTCTTGCTGTTTTTGGTGGGCCCATTTGTGCCATCAGGAAGAGCCCGGGCTGCTCACCAGGATTTGGAAAAGGGAATCGATCGTGATTTGGACCCTGGTTCTTAACCATGACCCCTTCTTAACTAAAGATTTTCTTAATTGAATGAACCCTGGTTCCTTAACCTGGTTTTTTTCTGGTTCTGGCTCCGGTTATTCTTATCTACCCGACCATTCATCCTTTCTAGTGAAAGAAAGATAAGGGGACAGACACAACCAATAAAGAAACAACCGTATCCAATACCCAAAA] [+] EMBL BI799606 [GCCCCCAACCGTTTTGGACTTGAGTAGTTTGAAAAAAGACATCACAACCTTGCCAAGAACGACGTTCGCCAGAATATATGACCCATGGCTCCTTTAGGCTCTTGTGAAATTCTGTGGGGTGGCGTAAGCTACCGAGATCAAATGCCAGTTAATTATGGTTTCTCCTAGAAGTTGGTTAGCGACTTGCCCATTTTGGTTCTAGGATTCTTGCTGTTTTTGGTGGGCCCATTTGTGCCATCAGGAAGAGCCCGGGCTGCTCACCAGGATTTGGAAAAGGGAATCGATCGTGATTTGGACCCTGGTTCTTAACCATGACCCCTTCTTAACTAAAGATTTTCTTAATTGAATGAACCCTGGTTCCTTAACCTGGTTTTTTTCTGGTTCTGGCTCCGGTTATTCTTATCTACCCGACCATTCATCCTTTCTAGTGAAAGAAAGATAAGGGGACAGACACAACCAATAAAGAAACAACCGTATCCAATACCCAAAA] consensusID : consensus_14893#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [GAAGAGCCCGGGCTGNTGCAGCAGGATTTGAAAAGGGAATNGATTGTGATTTGGNGCCTGTTTTTAANANGACCCCTTTTAANTAAGATTTTTTTATTTAAACCTGTTNTACTGTTTTTTTNTGTTTNGGNTCGGTTATTTTATTTAGCCGAGCCATTNATTCCTTTTTATGAAAGAAAGATANGGGGACAGAACNAAAAAAACAAATAANGAAACAAACGTNTTCNANACGCAAAAGAAAAGAGNGGNGGATGTGAAGAAAGAAGATNTTTACCNCC] [-] EMBL BE229231 [GAAGAGCCCGGGCTGNTGCAGCAGGATTTGAAAAGGGAATNGATTGTGATTTGGNGCCTGTTTTTAANANGACCCCTTTTAANTAAGATTTTTTTATTTAAACCTGTTNTACTGTTTTTTTNTGTTTNGGNTCGGTTATTTTATTTAGCCGAGCCATTNATTCCTTTTTATGAAAGAAAGATANGGGGACAGAACNAAAAAAACAAATAANGAAACAAACGTNTTCNANACGCAAAAGAAAAGAGNGGNGGATGTGAAGAAAGAAGATNTTTACCNCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14893#0 TCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACTTTTGTTTTAGCTGGT 60 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 CGTGACCAAGAAACCACCGGTTTTGCTTGGTGGGCCGGGAATGCCAGACTTATCAATTTG 120 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 TCGGGTAAACTACTTGGAGCTCACGTAGCCCATGCAGGATTAATCGTATTCTGGGCCGGA 180 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 GCAATGAACCTATTTGAAGTGGCCCATTTCGTACCAGAAAAACCCATGTATGAACAAGGG 240 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 TTGATTTTACTTCCGCACTTAGCTACTCTAGGTTGGGGAGTAGGGCCCGGGGGAGAAGTT 300 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 CTAGATACTTTTCCGTACTTTGTATCTGGAGTACTTCATCTAATTTCCTCCGCAGTCTTA 360 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 AGCTTCGGTGGCATTTATCACGCGCTTCTGGGACCGGAGACTCTTGAAGAATCTTTTCCA 420 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 TTCTTTGGTTATGTGTGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCACCTA 480 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 ATTTTGTTAGGTATAGGTGCTTTTCTTCTAGTACTCAAAGCTCTTTATTTTGGCGGTATA 540 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 TATGATACCTGGGCTCCTGGGGGAGGAGATGTAAGAAAAATTACCAATTTGACCCTTAGC 600 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 CCCGGTGTTATATTTGGTTATTTACTAAAATCCCCTTTTGGGGGAGAGGGTTGGATTGTT 660 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 AGTGTGGATGATTTAGAAGATATAATTGGGGGACATGTATGGTTGGGTTTCATTTGTGTA 720 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 TTTGGCGGAATTTGGCATATCTTAACCAAACCCTTCGCATGGGCTCGCCGTGCATTTGTA 780 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 TGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGCGCTTTATCTGTCTTTGGGTTTTAT 840 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 ---------------------------------------------GCCCCCAACCGTTTT 15 consensus_14893#2 --------GGNGNTTTGGGGGGGGGGGNGNCCAAAACNACCCTTTCCCGGGGGGGTTTTA 52 consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 CGCTTGTTGTTTTGTCTGGTTCAATAATACAGCTTATCCGAGG-TGAGTTTTATGGACCT 899 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 ------------------------------------------------------------ consensus_14893#4 GGACTTGAGTAGTTTGAAAAAAGACATCACAACCTTGCCAAGAACGACGTTCGCCAGAAT 75 consensus_14893#2 AAAAGGGAAAAGTTCCN-----AANGAAGGGGCGGGGCAAAAAATATGGGGTGGTTAATT 107 consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 ACTGGGCCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGATCAGCGTCTT 959 consensus_14893#3 ------------------------------------------------------------ consensus_14893#1 -----------------------------------------------------TCGCTCT 7 consensus_14893#4 ATATGACCCATGGCTCCTTTAGG-CTCTTGTGAAATTCTGTGGGGTGGCGTAAGCTACCG 134 consensus_14893#2 TTTGGNNCCNGGGTNAAATTNGTTTCGGTTTNNA-TTNGGGGGATGGGGGGGAAAAANTT 166 consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 GGAGCTAATGTGGGATCTGCCCAAGGACCCACAGGTTTAGGTAAATATCTAATGCGTTCC 1019 consensus_14893#3 ----------------------------------------------------------CG 2 consensus_14893#1 TGA-CTAATGTGGGATCTGCCCAAGACC---CAGGTGTAGT--AATATCTAATGCGTTCC 61 consensus_14893#4 AGATCAAATGCCAGTTAATTATGGTTTCTCCTAGAAGTTGGTTAGCGACTTGCCCATTTT 194 consensus_14893#2 AAAACGGAAANNG--TTGGNCCNGANAACCCCAAGTTGGAATTAACCNTCAATAAAGGAA 224 consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 CCAACGGGAGAGGTTATT-TTT-GGAGG------GGAAACTATGCGTTTTTGGGA--CCT 1069 consensus_14893#3 AGAHCNNNVGAGGTTATT-TTTTGGAGG------GGAAACTATGCGTTTTTGGRGACCTH 55 consensus_14893#1 CCA-CGGGAGAGGT-ATT-TT--GGAGG------GGAAACTATGCGTTTTTGGGA--CCT 108 consensus_14893#4 GGTTCTAGGATTCTTGCTGTTTTTGGTG------GGCCCATTTGTGCCATCAGGAAGAGC 248 consensus_14893#2 CAAANGNGGGGTTCCCCNGCGGNGGGGCCGTTTTAGAAANAGNGNATCCCCCGGG-CNGC 283 consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 TCGTGCTCCATGGTTAGAACCTCTAAGGG----GCCCCAACGGTTTGGACTTGAGTAGGT 1125 consensus_14893#3 TCGTGCTCCATGGTTAGAACCTCTAAGGG----GCCCCAACGGTTTGGACTTGAGTAGGT 111 consensus_14893#1 TCGTGCTCCATGGTTAGAACCTCTAAGGG----GCCCCAACGGTTTGGACTTGAGTAGGT 164 consensus_14893#4 CCGGGCTGC-TCACCAGGATTTGGAAAAG----GGA--ATCGATCGTGATTTGGACC--C 299 consensus_14893#2 NGGAANTCGGAAGGAGGAAGNNCCNGGGNTGT-GCAGCAGGATTTGAAAAGGGANTNGAT 342 consensus_14893#5 ----------------GAAGAGCCCGGGCTGNTGCAGCAGGATTTGAAAAGGGAATNGAT 44 * * * * * * * consensus_14893#0 TGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAA-TATATGACCCATGCT 1184 consensus_14893#3 TGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAWATATATGACCCATGCT 171 consensus_14893#1 TGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAA-TATATGACCCATGCT 223 consensus_14893#4 TGGTTCTTAAC-CATGACCCCTTCTTAACTAAAGATTTTCTTAATTGAATGAACCCTGGT 358 consensus_14893#2 TGNGATTTGGAGCCTGTTTTTNANANGACCCCTTTTAANTAAGATTTTTTTATTTANACC 402 consensus_14893#5 TGTGATTTGGNGCCTGTTTTTAANANGACCCCTTTTAANTAAGATTTTTTTATTTAAACC 104 ** * * * * * consensus_14893#0 CCTTTAGGCTCTTTNNNNTCTGTGGGTGGCGNNNNTACCGAGATCAATGCAGTTAATTAT 1244 consensus_14893#3 CCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAST-ACCGAGATCAATGCAGTTAATTAT 230 consensus_14893#1 CCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTACCGAGATCAATGCAGTTAATTAT 283 consensus_14893#4 TCCTTAACCTGGTTTTTTTCTGGTTCTGGCTCCGG---TTATTCTTATCTACCCGACCA- 414 consensus_14893#2 TGTTNTA--CTGTTTTTTTNTGTTN-TGGNTCGGTTATTTTATTTAGCCGAGCCATTCAT 459 consensus_14893#5 TGTTNTA--CTGTTTTTTTNTGTTT-NGGNTCGGTTATTTTATTTAGCCGAGCCATTNAT 161 * ** * ** ** * * consensus_14893#0 GTTTCTCCTNNNNGTTGGNNNNNGACTTCCCATNNNGNTCTAGGATTCTTCTTTTTTGTG 1304 consensus_14893#3 GTTTCTCCTAGAAGTTGGTTAGCGACTTCCCATTTTGTTCTAGGATTCTTCTTTTTTGTG 290 consensus_14893#1 GTTTCTCCTAGAAGTTGGTTAGCGACTTCCCATTTTGTTCTAGGATTCTTCTTTTTTGTG 343 consensus_14893#4 -TTCATCCTTTCTAGTGAAAGAAAG------ATAAGGGGACAGACACAACCA-----ATA 462 consensus_14893#2 -----TCCTTTTTATGAAAGAAAGA-------TAAGGGGACAGAACAAAAAAAACAAATA 507 consensus_14893#5 -----TCCTTTTTATGAAAGAAAGA-------TANGGGGACAGAACNAAAAAAACAAATA 209 **** * * ** * consensus_14893#0 GGCCANNNNNNGCATGCANNNNNNNNN--------------------------------- 1331 consensus_14893#3 GGC-ATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATC 349 consensus_14893#1 GGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATC 403 consensus_14893#4 AAGAAACAACCGTATCCAATACCCAAAA-------------------------------- 490 consensus_14893#2 AAGAAACAAACGTATTCAATACGCAAAAGAAAAGAGAGGAGGATGTGAAGAAAGAAGATA 567 consensus_14893#5 ANGAAACAAACGTNTTCNANACGCAAAAGAAAAGAGNGGNGGATGTGAAGAAAGAAGATN 269 * * * * consensus_14893#0 ------------------------------------------------------------ consensus_14893#3 GATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTAT 409 consensus_14893#1 GATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTAT 463 consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 TTTACCACC--------------------------------------------------- 576 consensus_14893#5 TTTACCNCC--------------------------------------------------- 278 consensus_14893#0 ------------------------------------------------------------ consensus_14893#3 ACCTGTTCTACTGTTTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCAT 469 consensus_14893#1 ACCTGTTCTACTGTTTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCAT 523 consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 ------------------------------------------------------------ consensus_14893#3 TCCTTTCTATGAAAGADAGATAAGGGGCCAGAACAAAAAAACAA---------------- 513 consensus_14893#1 TCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAACAACGT 583 consensus_14893#4 ------------------------------------------------------------ consensus_14893#2 ------------------------------------------------------------ consensus_14893#5 ------------------------------------------------------------ consensus_14893#0 --------------------------------- consensus_14893#3 --------------------------------- consensus_14893#1 ATTCAATACGCAAAAAAAAAAAAAAAAAAAANA 616 consensus_14893#4 --------------------------------- consensus_14893#2 --------------------------------- consensus_14893#5 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||