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Oryza sativa
cluster # 14898 cluster # 14898       Sequences # 18       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14898#0 length = 491 sequences # 14  
consensus_14898#1 length = 486 sequences # 1  
consensus_14898#2 length = 361 sequences # 1  
consensus_14898#3 length = 267 sequences # 1  
consensus_14898#4 length = 212 sequences # 1  

consensusID : consensus_14898#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 491
fasta sequence
                              [GCTGGGCCTGGTGCAACCCTTGATTTCCCTGAACTAACATTCACGTCAA-AAGTGGAATGCGATAAGAACACCATCTTCTCTG-CAGTT-CCTCCGAT-GT-TTCC-AACT-CCCCCACCT-CC-A-CCGT-CAGCTTGGAAACCA-TGAAGA-GTC-AGATCGCT-GAAT-AT---TTCTT-GAGCATCAAACGGAGGGAACGA-CA-GATGTTTGTTTGGTACAG-CAAAGG-ACACAT-ACAGAAA-GCAGACA-ACAT-AAGCTT-ACA-GAGCCT-CTAT-TTTCT-GT-ATCA-GTATGACA-GATCGGTATAAATTCATCTGTCGACAATAGACCGGGATGTTGT-GT-GCA-CCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCT-CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGACTTTATCATCATACTAAAGGATTTGTGTAACCTTTATACAGCTTTCTTGATTCCAAAAAAAAAA]

[+] EMBL BM418608             [GCTGGGCCTGGTGCAACCCTTGATTTCCCTGAACTAACATTCACGTCAA AAGTGGAATGCGATAAGAACACCATCTTCTCTG CAGTT CCTCCGATGGTGTTCCAAACTGCCCCCACCTGCC ACCCGTGCAGCTTGGAAACCA TGAAGA GTCAAGATCGCTGGAATGATGTGTGCTTGGAGCATC AACGGAGGGAACGA CA GATGTTTGTTTGGTACAG CAAAGG ACACAT ACAGAAA GCAGACA ACAT AAGCTT ACA GAGCCT CTAT TTTCT GT ATCA GTATGACA GATCGGTATAAATTCATCTGTCAAACATAGACCGGGATGTTGT GT  CA CCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCT CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAACCCGTTTTATAGGAGTGACTTTATCATCATACT                                                 ]
[+] EMBL BI810224             [                CCCTTGATTTCCCTGAACTAACATTCACGTCAAGAAGTGGAAT CGATAAGTACACCATCTTCTC G CAGTT CCTCCGAT GT TTCC AACT CCCCCACCT CC A CCGT CAGCTTGGAAACCACTGAAGA GTC AGATCGCT GAAT AT   TTCTT GAGCATCCAACGGAGGGAACGA CA GATGTTT TTTGGTACAG CAAAGG ACACAT ACAG AA GCAGAC  ACAT AAGCTT ACA GAGCCT CTAT TTTCT GT ATCA GTATGACA GATCGGTATAAATTCATCTGTCAACAATAGACCGGGAT TTGT GT GCACCCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCT CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACC TTTTATAGGA TGACTTTATCATCATACTAAAGGATTTGTGTAACCTTTATACAGCTTTCTTGATTCCAAAAAAAAAA]
[+] EMBL BI807786             [                                                                         tgCTTCTCTGCCGGTT CCTCCGAT GT TTCC CACT CCCCCACCT CC A CCGT CAGCTTGGAAACCC TGAAGA GTC AGATCGCT GAAT AT   TTCTT GAGCATCCAACGGAGGGAACGA CACGATGTTTGTTTGGTACAG CCAAGG ACACAT ACAGTAA GCAGACATACAT AAGCTT ACACGAGCCT CTAT TTTCT GT ATCC GTATGACC GATCGGTATAAATTCATCTGTC ACCATAGACCGGGATGTTGT GT GCC CCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCCGAGCT CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCCTTTTATAGGA TGACTTTATCATCATACTAAAGGATTT TGTAACTTTTAaaaaaaaaa                   ]
[+] EMBL AU093744             [                                                                             TCTCTG CAGTT CCTCCGAT GT TTCC AAGT CCCCCACCT CC A CCGT CAGCTTGGAAACCA TGAAGATGTC AGATCGCT GAAT AT   TTCTT GAGCATCAAACGGAGGGAACGATCA GATGTTTGTTTGGTACAG CAAAGGNACACAT ACAGAAA GCAGACA ACAT AAGCTT ACA GAGCCT CTAT TTTCT GT ATCA GTATGACA GATCGGTATAAATTCATCTGTCGACAATAGACCGGGATGTTGT GT GCA CCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCT CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGACTTTATCATCATACTAAAGGATTTGTGTAACCaaaa                            ]
[+] EMBL AU095892             [                                                                                  G CAGTT CCTCCGAT GT TTCC AACT CCCCCACCT CC A CCGT CAGCTTGGAAACCA TGAAGA GTC AGATCGCT GAAT AT   TTCTT GAGCATCAAACGGAGGGAACGA CA GATGTTTGTTTGGTACAG CAAAGG ACACAT ACAGAAA GCAGACA ACAT AAGCTT ACA GAGCCT CTAT TTTCT GT ATCA GTATGACA GATCGGTATAAATTCATCTGTCGACAATAGACCGGGATGTTGT GT GCA CCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCT CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGACTTTATCATCATACTAAAGGATTTGTGTAACCTTTATACAaaaaaa                  ]
[+] EMBL CA999085             [                                                                                  G CAGTT CCTCCGAT GT TTCC AACT CCCCCACCT CC A CCGT CAGCTTGGAAACCA TGAAGA GTC AGATCGCT GAAT AT   TTCTT GAGCATCAAACGGAGGGAACGA CA GATGTTTGTTTGGTACAG CAAAGG ACACAT ACAGAAA GCAGACA ACAT AAGCTT ACA GAGCCT CTAT TTTCT GT ATCA GTATGACA GATCGGTATAAATTCATCTGTCGACAATAGACCGGGATGTTGT GT GCA CCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCT CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGACTTTATCATCATACTAAAGGATTTGTGTAA                                  ]
[+] EMBL AU075536             [                                                                                  G CAGTTCCCTCCGAT GT TTCC AACT CCCCCACCT CC A CCGT CAGCTTGGAAACCA TGAAGA GTC AGATCGCT GAAT AT   TTCTT GAGCATCAAACGGAGGGAACGA CA GATGTTTGTTTGGTACAG CAAAGG ACACAT ACAGAAA GCAGACA ACAT AAGCTT ACA GAGCCT CTAT TTTCT GT ATCA GTATGACA GANCGGTATAAATTCATCTGTCGACAATAGACCGGGATGTTGT GT GCA CCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGNGCT CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGACTTTATCATCATACTAAAaaaaaa                                        ]
[+] EMBL AU093799             [                                                                                  G CAGTT CCTCCGAT GT TTCC AACT CCCCCACCT CC A CCGT CAGCTTGGAAACCA TGAAGA GTC AGATCGCT GAAT AT   TTCTT GAGCATCAAACGGAGGGAACGA CA GATGTTTGTTTGGTACAG CAAAGG ACACAT ACAGAAA GCAGACA ACAT AAGCTT ACA GAGCCT CTAT TTTCT GT ATCA GTATGACA GATCGGTATAAATTCATCTGTCGACAATAGACCGGGATGTTGT GT GCA CCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCT CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGACTTTATCATCAAAAAAAA                                              ]
[+] EMBL BM421671             [                                                                                  G CAGTT CCTCCGAT GT TTCC AACT CCCCCACCT CC A CCGT CAGCTTGGAAACCA TGAAGA GTC AGATCGCT GAAT AT   TTCTT GAGCATC AACGGAGGGAACGA CA GATGTTTGTTTGGTACAG C AAGG ACACAT ACAGAAA GCAGACA ACAT AAGCTT ACA GAGCCT CTAT TTTCT GT ATCA GTATGACA GATCGGTATAAATTCATCTGTCAAC ATAGACCGGGATGTTGT GT GCA CCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCT CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAaaaaaa                                                                 ]
[+] EMBL BM038422             [                                                                                  G CAGTT CCTCCGAT GT TTCC  ACT CCCCCACCT CC A CCGT CAGCTTGGAAACCA TGAAGA GTC AGATCGCT GAAT AT   TTCTT GAGCATC AACGGAGGGAACGA CA GATGTTTGTTTGGTACAGCCAAAGG ACACAT ACAGAAA  CAGAC  ACAT AAGCTT AC  GAGCCT CTAT TTTCT GT ATCA GTATGACA GATCGGTATAAATTCATCTGTCAACAATAGACCGGGATGTTGT GT GCA CCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCT CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAaaaaaa                                                                 ]
[-] EMBL CB670711             [                                                                                    CAGTT CCTCCGAT GT TTCC AACT CCCCCACCT CC A CCGT CAGCTTGGAAACCA TGAAGA GTC AGATCGCT GAAT AT   TTCTT GAGCATCAAACGGAGGGAACGA CA GATGTTTGTTTGGTACAG CAAAGG ACACAT ACAGAAA GCAGACA ACAT AAGCTT ACA GAGCCT CTAT TTTCT GT ATCA GTATGCCA GATCGGTATAAATTCATCTGTCGACAATAGACCGGGATGTTGT GT GCA CCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTGGTTCAGAGCTACATGTGTGAAGTTCTTTTTGTAGAAATGGACCCTTTATAAACCGTTTTATAGGAGTGACTTAAGCATCATACTAAAGGATTTGTGTACCCTTTATA                          ]
[-] EMBL CB670083             [                                                                                    CAGTT CCTCCGAT GT TTCC AACT CCCCCACCT CC A CCGT CAGCTTGGAAACCA TGAAGA GTC AGATCGCT GAAT AT   TTCTT GAGCATCAAACGGAGGGAACGA CA GATGTTTGTTTGGTACAG CAAAGG ACACAT ACAGAAA GCAGACA ACAT AAGCTT ACA GAGCCT CTAT TTTCT GT ATCA GTATGACA GATCGGTATAAATTCATCTGTCGACAATAGACCGGGATGTTGT GT GCA CCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCT CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGACTTTATCATCATACTAAAGGATTTGTGTAACCTTTATACAGCTTTCGGGATTCCAtttttatct]
[+] EMBL BM420768             [                                                                                             CCGAT GT TTCC AACT CCCCCACCTGCCAA CCGTGCAGCTTGGAAACCA TGAAGA GTC AGATCGCT GAATGAT   TTCTT GAGCATCAAACGGAGGGAACGA CA GATGTTTGTTTGGTACAG CAAAGG ACACATGACAGAAACGCAGACA ACATGAAGCTTGACACGAGCCTGCTATGTTTCTGGTAATCACGTATGACACGATCGGTATAAATTCATCTGTCAACAATAGACCGGGATGTTGTGGTGGCANCCTTGTGAAACTAATTTTT GGGTCCTTGTTGTTATTCGTTCAGAGCT CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGACTTTATCATCATACTAAAaaaaa                                         ]
[+] EMBL CB685436             [                                                                                                                                                      AGA CCC AGATCGCT GAAT AT   TTCTT GAGCATCAAACGGAGGGAACGA CA GATGTTTGTTTGGTACAG CAAAGG ACACAT ACAGAAA GCAGACA ACAT AAGCTT ACA GAGCCT CTAT TTTCT GT ATCA GTATGACA GATCGGTATAAATTCATCTGTCGACAATAGACCGGGATGTTGT GT GCA CCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCT CATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGACTTTATCATCATACTAAAGGATTTGTGTAACCTTT                             ]


>consensus_14898#0 GCTGGGCCTGGTGCAACCCTTGATTTCCCTGAACTAACATTCACGTCAAAAGTGGAATGC GATAAGAACACCATCTTCTCTGCAGTTCCTCCGATGTTTCCAACTCCCCCACCTCCACCG TCAGCTTGGAAACCATGAAGAGTCAGATCGCTGAATATTTCTTGAGCATCAAACGGAGGG AACGACAGATGTTTGTTTGGTACAGCAAAGGACACATACAGAAAGCAGACAACATAAGCT TACAGAGCCTCTATTTTCTGTATCAGTATGACAGATCGGTATAAATTCATCTGTCGACAA TAGACCGGGATGTTGTGTGCACCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCG TTCAGAGCTCATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATA GGAGTGACTTTATCATCATACTAAAGGATTTGTGTAACCTTTATACAGCTTTCTTGATTC CAAAAAAAAAA



consensusID : consensus_14898#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence
                              [TTTCCCTAACTAACACTTCACCGTCNCAAAGTGGAATCGATAAGAACACCCACTCTTTCTCTGCACGTTCCTCCGATGTTTCCACACTCCCCCACCCTCCACCCGTCACGCCTTGGAGAACCCACTGAAGGAGTCACGATTCGCCTGAATATTTTCTTGAGGCACTCACACACCGCGAGGGGAACCGCACCCACGATGTTTTGTTTGGTACCACGCCACAAGGGACACCACTACCACGAAAGCCACGACCACACCACTAAGCTTACCACGAGCCCTCTATTTTCCTGTATCACGTATGACCACGATCGGTATAAATTCACTCTGTCACACCATAGACCCGGGATGTTGTGTGCACCCTTGTGAAACTAATTTTTGGGGTCCCTTGTTGTTATTCGTTCACGAGCTCATGTGTGAAGTTCTTTTTGTAGAAATGGAACCCTTTATAAACCNTTTTATAGGAGTGACTTTATCATCATAAAAAAAAAA]

[+] EMBL BQ907379             [TTTCCCTAACTAACACTTCACCGTCNCAAAGTGGAATCGATAAGAACACCCACTCTTTCTCTGCACGTTCCTCCGATGTTTCCACACTCCCCCACCCTCCACCCGTCACGCCTTGGAGAACCCACTGAAGGAGTCACGATTCGCCTGAATATTTTCTTGAGGCACTCACACACCGCGAGGGGAACCGCACCCACGATGTTTTGTTTGGTACCACGCCACAAGGGACACCACTACCACGAAAGCCACGACCACACCACTAAGCTTACCACGAGCCCTCTATTTTCCTGTATCACGTATGACCACGATCGGTATAAATTCACTCTGTCACACCATAGACCCGGGATGTTGTGTGCACCCTTGTGAAACTAATTTTTGGGGTCCCTTGTTGTTATTCGTTCACGAGCTCATGTGTGAAGTTCTTTTTGTAGAAATGGAACCCTTTATAAACCNTTTTATAGGAGTGACTTTATCATCATAAAAAAAAAA]


>consensus_14898#1 TTTCCCTAACTAACACTTCACCGTCNCAAAGTGGAATCGATAAGAACACCCACTCTTTCT CTGCACGTTCCTCCGATGTTTCCACACTCCCCCACCCTCCACCCGTCACGCCTTGGAGAA CCCACTGAAGGAGTCACGATTCGCCTGAATATTTTCTTGAGGCACTCACACACCGCGAGG GGAACCGCACCCACGATGTTTTGTTTGGTACCACGCCACAAGGGACACCACTACCACGAA AGCCACGACCACACCACTAAGCTTACCACGAGCCCTCTATTTTCCTGTATCACGTATGAC CACGATCGGTATAAATTCACTCTGTCACACCATAGACCCGGGATGTTGTGTGCACCCTTG TGAAACTAATTTTTGGGGTCCCTTGTTGTTATTCGTTCACGAGCTCATGTGTGAAGTTCT TTTTGTAGAAATGGAACCCTTTATAAACCNTTTTATAGGAGTGACTTTATCATCATAAAA AAAAAA



consensusID : consensus_14898#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence
                              [CAGTTCCTCCGATGTTTCCAACTCCCCCACTCCACCGTCAGCTTGGAAACCATGAAGAGTCAGATCGCTGAATATTTCTTGAGCATCAAACGGAGGGAACGACAGATGTTTGTTTGGTACAGCAAAGGACACATACAGAAAGCAGACAACATAAGCTTACAGAGCCTCTATTTTCTGTATCAGTATGACAGATCGGTATAAATTCATCTGTCGACAATAGACCGGGATGTTGTGTGCACCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCTCATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGATCTCCGAGGGGGAAACC]

[-] EMBL CB637093             [CAGTTCCTCCGATGTTTCCAACTCCCCCACTCCACCGTCAGCTTGGAAACCATGAAGAGTCAGATCGCTGAATATTTCTTGAGCATCAAACGGAGGGAACGACAGATGTTTGTTTGGTACAGCAAAGGACACATACAGAAAGCAGACAACATAAGCTTACAGAGCCTCTATTTTCTGTATCAGTATGACAGATCGGTATAAATTCATCTGTCGACAATAGACCGGGATGTTGTGTGCACCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCTCATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGATCTCCGAGGGGGAAACC]


>consensus_14898#2 CAGTTCCTCCGATGTTTCCAACTCCCCCACTCCACCGTCAGCTTGGAAACCATGAAGAGT CAGATCGCTGAATATTTCTTGAGCATCAAACGGAGGGAACGACAGATGTTTGTTTGGTAC AGCAAAGGACACATACAGAAAGCAGACAACATAAGCTTACAGAGCCTCTATTTTCTGTAT CAGTATGACAGATCGGTATAAATTCATCTGTCGACAATAGACCGGGATGTTGTGTGCACC TTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCTCATGTGTGAAGTTC TTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGATCTCCGAGGGGGAAAC C



consensusID : consensus_14898#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence
                              [AGCTTGGAAACCATGAAGAGTCAGATCGCTGAATATTTCTTGAGCATCAGAACGGAGGGAACGACAGATGTTTTTTTGGTACAGCAAAGGACACATACAGAAAGCAGACAACATAAGCTTGACAGAGCCTCTATTTTCTGTATCCCGTATGACAGATCGCGTATAAATTCATCTGTCTAACACACTAGACCGGGATGTTGTGTGCACCTTGTGAACTATTTTTGGGGTCCTTGTTGTTACTCGTTCAGAGCTCATGCTAGCTGCAAG]

[+] EMBL BI809846             [AGCTTGGAAACCATGAAGAGTCAGATCGCTGAATATTTCTTGAGCATCAGAACGGAGGGAACGACAGATGTTTTTTTGGTACAGCAAAGGACACATACAGAAAGCAGACAACATAAGCTTGACAGAGCCTCTATTTTCTGTATCCCGTATGACAGATCGCGTATAAATTCATCTGTCTAACACACTAGACCGGGATGTTGTGTGCACCTTGTGAACTATTTTTGGGGTCCTTGTTGTTACTCGTTCAGAGCTCATGCTAGCTGCAAG]


>consensus_14898#3 AGCTTGGAAACCATGAAGAGTCAGATCGCTGAATATTTCTTGAGCATCAGAACGGAGGGA ACGACAGATGTTTTTTTGGTACAGCAAAGGACACATACAGAAAGCAGACAACATAAGCTT GACAGAGCCTCTATTTTCTGTATCCCGTATGACAGATCGCGTATAAATTCATCTGTCTAA CACACTAGACCGGGATGTTGTGTGCACCTTGTGAACTATTTTTGGGGTCCTTGTTGTTAC TCGTTCAGAGCTCATGCTAGCTGCAAG



consensusID : consensus_14898#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence
                              [TTCAAACCCAATTAAGGACCCGGGGGATTGGTTTGGTTGGGTGCCACCCCCTTTGGGTGAAAACCATAAATTTTTTTTTGGGGGGTCCTTGTTGTTATTCGTTCAGAGCTCATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGACTTTATCATCATATAAAGGATTTGTGTAACCTTTAAAAAAAAAA]

[+] EMBL BI808952             [TTCAAACCCAATTAAGGACCCGGGGGATTGGTTTGGTTGGGTGCCACCCCCTTTGGGTGAAAACCATAAATTTTTTTTTGGGGGGTCCTTGTTGTTATTCGTTCAGAGCTCATGTGTGAAGTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGACTTTATCATCATATAAAGGATTTGTGTAACCTTTAAAAAAAAAA]


>consensus_14898#4 TTCAAACCCAATTAAGGACCCGGGGGATTGGTTTGGTTGGGTGCCACCCCCTTTGGGTGA AAACCATAAATTTTTTTTTGGGGGGTCCTTGTTGTTATTCGTTCAGAGCTCATGTGTGAA GTTCTTTTTGTAGAAATGGAACCTTTATAAACCGTTTTATAGGAGTGACTTTATCATCAT ATAAAGGATTTGTGTAACCTTTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14898#2      ------------------------------------------------------------
consensus_14898#3      ------------------------------------------------------------
consensus_14898#1      ----------------------TTTCCCTAACTAACACTTCACCGTCNCAAAGTGGAATC 38
consensus_14898#0      GCTGGGCCTGGTGCAACCCTTGATTTCCCTGAACTAACATTCACGTCAAAAGTGGAATGC 60
consensus_14898#4      ------------------------------------------------------------
                                                                                   

consensus_14898#2      --------------------------CAGTTCCTCCGATGTTTCCAACTCCCCC-ACTCC 33
consensus_14898#3      ------------------------------------------------------------
consensus_14898#1      GATAAGAACACCCACTCTTTCTCTGCACGTTCCTCCGATGTTTCCACACTCCCC-CACCC 97
consensus_14898#0      GATAAGAACACCATCTTCTCTGC----AGTTCCTCCGATGTTTCCAACTCCCCCACCTCC 116
consensus_14898#4      ------------------------------------------------------------
                                                                                   

consensus_14898#2      ACCGTCAG------CTTGGAAA--CCAT--GAAGAGTCAGA--TCGC-TGAATATTT-CT 79
consensus_14898#3      ------AG------CTTGGAAA--CCAT--GAAGAGTCAGA--TCGC-TGAATATTT-CT 40
consensus_14898#1      TCCACCCGTCACGCCTTGGAGAACCCACTGAAGGAGTCACGATTCGCCTGAATATTTTCT 157
consensus_14898#0      ACCGTCAG------CTTGGAAA--CCAT--GAAGAGTCAGA--TCGC-TGAATATTT-CT 162
consensus_14898#4      ------------------------------------------------------------
                                                                                   

consensus_14898#2      TGAG-CAT-----CA-AACGGAGGGAACGACA-----GATGTTTG-TTTGGTACAGC--- 123
consensus_14898#3      TGAG-CAT-----CAGAACGGAGGGAACGACA-----GATGTTTT-TTTGGTACAGC--- 85
consensus_14898#1      TGAGGCACTCACACACCGCGAGGGGAACCGCACCCACGATGTTTTGTTTGGTACCACGCC 217
consensus_14898#0      TGAG-CAT-----CA-AACGGAGGGAACGACA-----GATGTTTG-TTTGGTACAGC--- 206
consensus_14898#4      ------------------------------------------------------------
                                                                                   

consensus_14898#2      --AAAGGACACA-----TACAGAAAGCA-GACAACA----TAAGCTT---ACAGAGCCTC 168
consensus_14898#3      --AAAGGACACA-----TACAGAAAGCA-GACAACA----TAAGCTTG--ACAGAGCCTC 131
consensus_14898#1      ACAAGGGACACCACTACCACGAAAGCCACGACCACACCACTAAGCTTACCACGAGCCCTC 277
consensus_14898#0      --AAAGGACACA-----TACAGAAAGCA-GACAACA----TAAGCTT---ACAGAGCCTC 251
consensus_14898#4      ------------------------------------------------------------
                                                                                   

consensus_14898#2      TATTTTC-TGTATCA-GTATGACA--GATCG-GTATAAATTCA-TCTGTCGA---CAATA 219
consensus_14898#3      TATTTTC-TGTATCCCGTATGACA--GATCGCGTATAAATTCA-TCTGTCTAACACACTA 187
consensus_14898#1      TATTTTCCTGTATCACGTATGACCACGATCG-GTATAAATTCACTCTGTCACAC-CATAG 335
consensus_14898#0      TATTTTC-TGTATCA-GTATGACA--GATCG-GTATAAATTCA-TCTGTCGA---CAATA 302
consensus_14898#4      -----------TTCAAACCCAATTAAGGACCCG-GGGGATTGGTTTGGTTGGG--TGCCA 46
                                   **       *    *  *  *     ***   *  **           

consensus_14898#2      GACCGGGATGTTGTGTGCACC-TTGTGAAACTAATTTTTGGGGTCC-TTGTTGTTATTCG 277
consensus_14898#3      GACCGGGATGTTGTGTGCACC-TTGTGAACT--ATTTTTGGGGTCC-TTGTTGTTACTCG 243
consensus_14898#1      ACCCGGGATGTTGTGTGCACCCTTGTGAAACTAATTTTTGGGGTCCCTTGTTGTTATTCG 395
consensus_14898#0      GACCGGGATGTTGTGTGCACC-TTGTGAAACTAATTTTTGGGGTCC-TTGTTGTTATTCG 360
consensus_14898#4      CCCC----CTTTGGGTGAAAA-CCATAAATTTTTTTTTGGGGGGTCCTTGTTGTTATTCG 101
                         **      *** *** *      * **     **** ****  * ********* ***

consensus_14898#2      TTCA-GAGCTCATGTGTGAAGTTCTTTTTGTAGAAATGGAACC-TTTATAAACCGTTTTA 335
consensus_14898#3      TTCA-GAGCTCATGCTAGCTGCAAG----------------------------------- 267
consensus_14898#1      TTCACGAGCTCATGTGTGAAGTTCTTTTTGTAGAAATGGAACCCTTTATAAACCNTTTTA 455
consensus_14898#0      TTCA-GAGCTCATGTGTGAAGTTCTTTTTGTAGAAATGGAACC-TTTATAAACCGTTTTA 418
consensus_14898#4      TTCA-GAGCTCATGTGTGAAGTTCTTTTTGTAGAAATGGAACC-TTTATAAACCGTTTTA 159
                       **** *********   *  *                                       

consensus_14898#2      TAGGAGTGATCTCCGAGGGGGAAACC---------------------------------- 361
consensus_14898#3      ------------------------------------------------------------
consensus_14898#1      TAGGAGTGACTTTATCATCATAAAAAAAAAA----------------------------- 486
consensus_14898#0      TAGGAGTGACTTTATCATCATACTAAAGGATTTGTGTAACCTTTATACAGCTTTCTTGAT 478
consensus_14898#4      TAGGAGTGACTTTATCATCATATAAAGGATTTGTGTAACCTTTAAAAAAAAAA------- 212
                                                                                   

consensus_14898#2      -------------
consensus_14898#3      -------------
consensus_14898#1      -------------
consensus_14898#0      TCCAAAAAAAAAA 491
consensus_14898#4      -------------
                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)