These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_149#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 746 fasta sequence [GGGGGGAAAAAGAAGACGACGACGGCGACGAAGAAGAAGGAGTTGATGTCTCAAGCCGAGATTGATAGCCACATCCGGTACCAAACCGTGGAGTTTCGTGAGGAGGACATGGTTAAGGTTGGGGATCATATGGATGAATACTTTGCTAAGATCATCCGTGATATAAACCGGATTGAATCAAGGCATATGAGAGCGAGAGACAATGTTCTGAAACAGTACTATGAGAAAGGCTATGTGGAGAAAGACGCTTATCAGAAAGGCTACGAAGCTGCAGGTGAAGATGAAGAATCGATCTGCAGGTAAAGATGGAGAAAAAACCTTACCTTCTGGTGAAGCTGATGGAGAAGAAACCTTACCTGCTGGCGACCAAGAATCCTCTCCTGCAGGCGCTGAAGATTTCCCTGCTCCTCATCCTGGTCAAAGAAGGTTTCGACCGGGTGTTTCCATCAATGGAGGAAAAGTTAACAAGCTGAATTAGCTACTAAGCGATGTGCTGATACACTTCGCTGATTAGCAGTCGAGTCGTTCTTTTTTTTTTTTTAAGATTTACCTACTAGTTGTCGTAGTATCTTCCTGTGTTGGATTATGGAACTCAATCTCAATTATCAGTTTTTGGTTCAATATTTCTTGGTTAGCACAACAGATCAGCATTAGCAGCAACACTGGTAAAATACTAACACAATATCTGAACGAAAACATCCTTTTCAATATAAAATACACGNTTTATCANGCGCCTCAAGCCGTAG] [+] EMBL CA766587 [GGGGGGAAAAAGAAGACGACGACGGCGACGAAGAAGAAGGAGTTGATGTCTCAAGCCGAGATTGATAGCCACATCCGGTACCAAACCGTGGAGTTTCGTGAGGAGGACATGGTTAAGGTTGGGGATCATATGGATGAATACTTTGCTAAGATCATCCGTGATATAAACCGGATTGAATCAAGGCATATGAGAGCGAGAGACAATGTTCTGAAACAGTACTATGAGAAAGGCTATGTGGAGAAAGACGCTTATCAGAAAGGCTACGAAGCTGCAGGTGAAGATGAAGAATCGATCTGCAGGTAAAGATGGAGAAAAAACCTTACCTTCTGGTGAAGCTGATGGAGAAGAAACCTTACCTGCTGGCGACCAAGAATCCTCTCCTGCAGGCGCTGAAGATTTCCCTGCTCCTCATCCTGGTCAAAGAAGGTTTCGACCGGGTGTTTCCATCAATGGAGGAAAAGTTAACAAGCTGAATTAGCTACTAAGCGATGTGCTGATACACTTCGCTGATTAGCAGTCGAGTCGTTCTTTTTTTTTTTTTAAGATTTACCTACTAGTTGTCGTAGTATCTTCCTGTGTTGGATTATGGAACTCAATCTCAATTATCAGTTTTTGGTTCAATATTTCTTGGTTAGCACAACAGATCAGCATTAGCAGCAACACTGGTAAAATACTAACACAATATCTGAACGAAAACATCCTTTTCAATATAAAATACACGNTTTATCANGCGCCTCAAGCCGTAG] consensusID : consensus_149#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [GACGAGACAAGGGGAAGGAGTTGATGTCTCAAGCCGAGATTGATAGCCACATCCGGTACCAAACCGTGGAGTTTCGTGAGGAGGACATGGTTAAGGTTGGGGATCATATGGATGAATACTTTGCTAAGATCATCCGTGATATAAACCGGATTGAATCAAGGCATATGAGAGCGAGAGACAATGTTCTGAAACAGTACTGTGAGAAAGGCTATGTGGAGAAAGACGCTTATCAGAAAGGCTACGAAGCTGCAGGTGAAGATGAAGAATCGATCTGCAGGTAAAGATGGAGAAAAAACCTTACCTTCTGGTGGAGCTGATGGAGAAGAAACCTTACCTGCTGGCGACCAAGAATCCTTTCCTGCAGGCGCTGAAGATTTCCCTGCTCCTCATCCTGGTCAAAGAAGGTTTCGACCGGGTGTTTCCATCAATGGAGGAAAAGTTAGCAAGCTGAATTAGCTACTAAGCGATGTGCTGATACACTTCGCTGATTAGCAGTCGAGTCGTTCTTTTTTTTTTTTAAGATTTACCTACTAGTTGTCGTAGTATCTTCCTGTGTTGGATTATGGAACTCAATCTCAATTATCAGTTTTTGGTTTAATAAAAAAAAAAAA] [-] EMBL CA761907 [GACGAGACAAGGGGAAGGAGTTGATGTCTCAAGCCGAGATTGATAGCCACATCCGGTACCAAACCGTGGAGTTTCGTGAGGAGGACATGGTTAAGGTTGGGGATCATATGGATGAATACTTTGCTAAGATCATCCGTGATATAAACCGGATTGAATCAAGGCATATGAGAGCGAGAGACAATGTTCTGAAACAGTACTGTGAGAAAGGCTATGTGGAGAAAGACGCTTATCAGAAAGGCTACGAAGCTGCAGGTGAAGATGAAGAATCGATCTGCAGGTAAAGATGGAGAAAAAACCTTACCTTCTGGTGGAGCTGATGGAGAAGAAACCTTACCTGCTGGCGACCAAGAATCCTTTCCTGCAGGCGCTGAAGATTTCCCTGCTCCTCATCCTGGTCAAAGAAGGTTTCGACCGGGTGTTTCCATCAATGGAGGAAAAGTTAGCAAGCTGAATTAGCTACTAAGCGATGTGCTGATACACTTCGCTGATTAGCAGTCGAGTCGTTCTTTTTTTTTTTTAAGATTTACCTACTAGTTGTCGTAGTATCTTCCTGTGTTGGATTATGGAACTCAATCTCAATTATCAGTTTTTGGTTTAATAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_149#0 GGGGGGAAAAAGAAGACGACGACGGCGACGAAGAAGAAGGAGTTGATGTCTCAAGCCGAG 60 consensus_149#1 --------------------GACGA-GAC-AAGGGGAAGGAGTTGATGTCTCAAGCCGAG 38 **** *** *** ************************* consensus_149#0 ATTGATAGCCACATCCGGTACCAAACCGTGGAGTTTCGTGAGGAGGACATGGTTAAGGTT 120 consensus_149#1 ATTGATAGCCACATCCGGTACCAAACCGTGGAGTTTCGTGAGGAGGACATGGTTAAGGTT 98 ************************************************************ consensus_149#0 GGGGATCATATGGATGAATACTTTGCTAAGATCATCCGTGATATAAACCGGATTGAATCA 180 consensus_149#1 GGGGATCATATGGATGAATACTTTGCTAAGATCATCCGTGATATAAACCGGATTGAATCA 158 ************************************************************ consensus_149#0 AGGCATATGAGAGCGAGAGACAATGTTCTGAAACAGTACTATGAGAAAGGCTATGTGGAG 240 consensus_149#1 AGGCATATGAGAGCGAGAGACAATGTTCTGAAACAGTACTGTGAGAAAGGCTATGTGGAG 218 **************************************** ******************* consensus_149#0 AAAGACGCTTATCAGAAAGGCTACGAAGCTGCAGGTGAAGATGAAGAATCGATCTGCAGG 300 consensus_149#1 AAAGACGCTTATCAGAAAGGCTACGAAGCTGCAGGTGAAGATGAAGAATCGATCTGCAGG 278 ************************************************************ consensus_149#0 TAAAGATGGAGAAAAAACCTTACCTTCTGGTGAAGCTGATGGAGAAGAAACCTTACCTGC 360 consensus_149#1 TAAAGATGGAGAAAAAACCTTACCTTCTGGTGGAGCTGATGGAGAAGAAACCTTACCTGC 338 ******************************** *************************** consensus_149#0 TGGCGACCAAGAATCCTCTCCTGCAGGCGCTGAAGATTTCCCTGCTCCTCATCCTGGTCA 420 consensus_149#1 TGGCGACCAAGAATCCTTTCCTGCAGGCGCTGAAGATTTCCCTGCTCCTCATCCTGGTCA 398 ***************** ****************************************** consensus_149#0 AAGAAGGTTTCGACCGGGTGTTTCCATCAATGGAGGAAAAGTTAACAAGCTGAATTAGCT 480 consensus_149#1 AAGAAGGTTTCGACCGGGTGTTTCCATCAATGGAGGAAAAGTTAGCAAGCTGAATTAGCT 458 ******************************************** *************** consensus_149#0 ACTAAGCGATGTGCTGATACACTTCGCTGATTAGCAGTCGAGTCGTTCTTTTTTTTTTTT 540 consensus_149#1 ACTAAGCGATGTGCTGATACACTTCGCTGATTAGCAGTCGAGTCGTTCTTTTTTTTTTTT 518 ************************************************************ consensus_149#0 TAAGATTTACCTACTAGTTGTCGTAGTATCTTCCTGTGTTGGATTATGGAACTCAATCTC 600 consensus_149#1 -AAGATTTACCTACTAGTTGTCGTAGTATCTTCCTGTGTTGGATTATGGAACTCAATCTC 577 *********************************************************** consensus_149#0 AATTATCAGTTTTTGGTTCAATATTTCTTGGTTAGCACAACAGATCAGCATTAGCAGCAA 660 consensus_149#1 AATTATCAGTTTTTGGTTTAATAAAAAAAAAAAA-------------------------- 611 ****************** **** * consensus_149#0 CACTGGTAAAATACTAACACAATATCTGAACGAAAACATCCTTTTCAATATAAAATACAC 720 consensus_149#1 ------------------------------------------------------------ consensus_149#0 GNTTTATCANGCGCCTCAAGCCGTAG 746 consensus_149#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||