|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1864 fasta sequence
[ACAACCGAGAGCTCGCTAGTCGTCGTCCTCGAAACGCTCGCGGCGACTCCGGTGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTTCGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTGGGAAATTTCAAGCATTTGTGCTTGCGTACTCCGGAATGGCCAAGATATCTGAGGCAATGGAAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAGGCTGAATGGGAGCTTTCTGCGCAGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGGTATGCTTGTAGGAGCATATTCTTGGGGCATAGTCTCAGACAACTATGGGAGAAGGGTTGGGTTCAATTTCACAGCCCTTGTAACTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCGTGCTGAGGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAATTCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTGGCACAATAATGGAAGCTTCACTAGCTTGGGCTGTAGTGCCAAGTTTGGGCTGGAGGTGGCTGCTAGCGTTCTCATCGTTGCCATCATTTGCTCTACTACTGTTCTATCCACTGACACTGGAATCACCAAGATACTTATGCATGAAGGGCAGAACTGCTGATGCGGTGCAGGTTTTGGAAACAATGGCACGATTAAACCGTGTAGCTCTCCCTTCTGGCCATCTTATGTCTGGCCATCGAATGGAGCTCCATGAGTTGACAGATTCCTCAGAGACGTCACAGTTGCTTTCTGCTAAGAAAACCAACCCTGCTGCTCATTCTAGC-AAACCGAGATTGGGGGCCGCAATGCGATTTTAAAGCTTCTGTCCCCAAATTTAATTAGATCTAGTCTTCTTCTTTGGACTGTCTTTCTTGGTCATGCCTTCTTATACTACGGTCTTGTTCTACTAACCTCGGAATTGAGTCATGGAAATAAGATTTGTGGATCAGAGGGGATAGTAACAATGCAAACAAACCACTCAAACGATGCTAATCTGTACAGAAACGTGTTCATCACTAGCTTTGGAGAGGTTCCTGGCATTATACTATCTGCGGCAATAGTGGACAAGATTGGGCGCAAACTCTCAATGTCCTCTATGCTTTATATCAGTTGCCTGTGCATAGCTCCCCTTATGGTCCCTCAAACAGAGTCCCTGACAACTATCTTCCTGTTCGGTGCAC-GCATTTGCATCTCCGCA--AGCTTCATTGTCTTGCACATCTATGCTCCTGAGATATACCCAACCGCAGTCAGGGCTACCGGAGTCGGGTTTGCGAGCTCAATCGCTCGTTTCGGTGGGATCTTGTG-CCCTCTTGTGGCCGTTGGTTTGGTGCA-CGCGT-GCCATCAGACTGCA-G-CCA-T-CCTGATATTCAT-CACGGTGATGC-TCGTCT-CAGGTGTTGCAGTCTCATACTTTCCCCTGGAAACAAGCGGCCGGAAATTGAGTGACCACATCGCGGCGTAAGAGCTAAGTTGCGAGCAGAATCTGACAGTGTTGCAAGTGCTAGTTTCTTTAGCTATACAAAATTACAGGATTGAGCTCCTAGAGGCCATTCAGA--TTTTTTTTTTCTTTCAGTTCGTTTAAAGATCATATATATAGAATAGAAATGAAAGATGGTGGATTTCAGATTTTAAATGTCATTACATTGTTTTAACCAGACATATGTAAACTGCCAAATCGAGATGCTTGCTTTGCTCTCTTGAAATGGGATGATCAATATGTTTTGAAGGAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK071542 [ACAACCGAGAGCTCGCTAGTCGTCGTCCTCGAAACGCTCGCGGCGACTCCGGTGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTTCGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTGGGAAATTTCAAGCATTTGTGCTTGCGTACTCCGGAATGGCCAAGATATCTGAGGCAATGGAAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAGGCTGAATGGGAGCTTTCTGCGCAGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGGTATGCTTGTAGGAGCATATTCTTGGGGCATAGTCTCAGACAACTATGGGAGAAGGGTTGGGTTCAATTTCACAGCCCTTGTAACTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCGTGCTGAGGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAATTCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTGGCACAATAATGGAAGCTTCACTAGCTTGGGCTGTAGTGCCAAGTTTGGGCTGGAGGTGGCTGCTAGCGTTCTCATCGTTGCCATCATTTGCTCTACTACTGTTCTATCCACTGACACTGGAATCACCAAGATACTTATGCATGAAGGGCAGAACTGCTGATGCGGTGCAGGTTTTGGAAACAATGGCACGATTAAACCGTGTAGCTCTCCCTTCTGGCCATCTTATGTCTGGCCATCGAATGGAGCTCCATGAGTTGACAGATTCCTCAGAGACGTCACAGTTGCTTTCTGCTAAGAAAACCAACCCTGCTGCTCATTCTAGC AAACCGAGATTGGGGGCCGCAATGCGATTTTAAAGCTTCTGTCCCCAAATTTAATTAGATCTAGTCTTCTTCTTTGGACTGTCTTTCTTGGTCATGCCTTCTTATACTACGGTCTTGTTCTACTAACCTCGGAATTGAGTCATGGAAATAAGATTTGTGGATCAGAGGGGATAGTAACAATGCAAACAAACCACTCAAACGATGCTAATCTGTACAGAAACGTGTTCATCACTAGCTTTGGAGAGGTTCCTGGCCTTATACTATCTGCGGCAATAGTGGACAAGATTGGGCGCAAACTCTCAATGTCCTCTATGCTTTATATCAGTTGCCTGTGCATAGCTCCCCTTATGGTCCCTCAAACAGAGTCCCTGACAACTATCTTCCTGTTCGGTGCAC GCATTTGCATCTCCGCA AGCTTCATTGTCTTGCACATCTATGCTCCTGAGATATACCCAACCGCAGTCAGGGCTACCGGAGTCGGGTTTGCGAGCTCAATCGCTCGTTTCGGTGGGATCTTGTG CCCTCTTGTGGCCGTTGGTTTGGTGCA CGCGT GCCATCAGACTGCA G CCA T CCTGATATTCAT CACGGTGATGC TCGTCT CAGGTGTTGCAGTCTCATACTTTCCCCTGGAAACAAGCGGCCGGAAATTGAGTGACCACATCGCGGCGTAAGAGCTAAGTTGCGAGCAGAATCTGACAGTGTTGCAAGTGCTAGTTTCTTTAGCTATACAAAGTTACAGGATTGAGCTCCTAGAGGCCATTCAGA TTTTTTTTTTCTTTCAGTTCGTTTAAAGATCATATATATAGAATAGAAATGAAAGATGGTGGATTTCAGATTTTAAATGTCATTACATTGTTTTAACCAGACATATGTAAACTGCCAAATCGAGATGCTTGCTTTGCTCTCTTGAAATGGGATGATCAATAT ]
[+] EMBL CF322967 [ AATAATGGAAGCTTCACTAGCTTGGGCTGTAATGCCAAGTTTGGGCTGGAGGTGGCTGCTAGCGTTCTCATCGTTGCCATTATTTGCTCTACTACTGTTCTATCCACTGACACTGGAATCACCAAGATACTTATGCATGAAGGGCAGAACTGCTGATGCGGTGCAGGTTTTGGAAACAATGGCACGATTAAACCGTGTAGCTCTCCCTTCTGGCCATCTTATGTCTGGCCATCGAATGGAGCTCCATGAGTTGACAGATTCCTCAGAGACATCACAGTTGCTTTCTGCTAAGAAAACCAACCCTGCTGCTCATTCTAGCAAAACCGAGATTGGGGGCCGCAATGCGATTTTAAAGCTTCTGTCCCCAAATTTAATTAGATCTAGTCTTCTTCTTTGGACTGTCTTTCTTGGTCATGCCTTCTTATACTACGGTCTTGTTCTACTAACCTCGGAATTGAGTCATGGAAATAAGATTTGTGGATCAGAGGGGATAGTAACAATGCAAACAAACCACTCAAACGATGCTAATCTGTACAGAAACGTGTTCATC ]
[-] EMBL CB621628 [ ATGGAAATAAGATTTGTGGATCAGAGGGGATAGTAACAATGCAAACAAACCACTCAAACGATGCTAATCTGTACAGAAACGTGTTCATCACTAGCTTTGGAGAGGTTCCTGGCATTATACTATCTGCGGCAATAGTGGACAAGATTGGGCGCAAACTCTCAATGTCCTCTATGCTTTATATCAGTTGCCTGTGCATAGCTCCCCTTATGGTCCCTCAAACAGAGTCCCTGACAACTATCTTCCTGTTCGGTGCAC GCATTTGCATCTCCGCA AGCTTCATTGTCTTGCACATCTATGCTCCTGAGATATACCCAACCGCAGTCAGGGCTACCGGAGTCGGGTTTGCGAGCTCAATCGCTCGTTTCGGTGGGATCTTGTG CCCTCTTGTGGCCGTTGGTTTGGTGCA CGCGT GCCATCAGACTGCA G CCA T CCTGATATTCAT CACGGTGATGC TCGTCT CAGGTGTTGCAGTCTCATACTTTCCCCTGGAAACAAGCGGCCGGAAATTGAGTGACCACATCGCGGCGTAAGAGCTAAGTTGCGAGCAGAATCTGACAGTGTTGCAAGTGCTAGTTTCTTTAGCTATACAAAATTACAGGATTGAGCTCCTAGAGGCCATTCAGA TTTTTTTTCTTTCAGTACGTTTAAAGATCATATATATAGAATAGAAATGAAAGATGGTGGATTTCAGATTTTAAATGTCATTACATTGTTTTAACCAGACATATGTAAACTGCCAAATCGAGATGCTTCCTTTTCTCACGTGAAATGGGACGATCAATAT ]
[-] EMBL CB621490 [ ATAAGATTTGTGGATCAGAGGGGATAGTAACAATGCAAACAAACCACTCAAACGATGCTAATCTGTACAGAAACGTGTTCATCACTAGCTTTGGAGAGGTTCCTGGCATTATACTATCTGCGGCAATAGTGGACAAGATTGGGCGCAAACTCTCAATGTCCTCTATGCTTTATATCAGTTGCCTGTGCATAGCTCCCCTTATGGTCCCTCAAACAGAGTCCCTGACAACTATCTTCCTGTTCGGTGCAC GCATTTGCATCTCCGCA AGCTTCATTGTCTTGCACATCTATGCTCCTGAGATATACCCAACCGCAGTCAGGGCTACCGGAGTCGGGTTTGCGAGCTCAATCGCTCGTTTCGGTGGGATCTTGTG CCCTCTTGTGGCCGTTGGTTTGGTGCA CGCGT GCCATCAGACTGCA G CCA T CCTGATATTCAT CACGGTGATGC TCGTCT CAGGTGTTGCAGTCTCATACTTTCCCCTGGAAACAAGCGGCCGGAAATTGAGTGACCACATCGCGGCGTAAGAGCTAAGTTGCGAGCAGAATCTGACAGTGTTGCAAGTGCTAGTTTCTTTAGCTATACAAAATTACAGGATTGAGCTCCTAGAGGCCATTCAGA TTTTTTTTCTTTCAGTACGTTTAAAGATCATATATATAGAATAGAAATGAAAGATGGTGGATTTCAGATTTTAAATGTCATTACATTGTTTTAACCAGACATATGTAAACTGCCAAATCGAGATGCTTGCTTTTCTTACGGGAAATGGGACGATCAATATTTTTGGAAGGccctaa ]
[-] EMBL CB618686 [ ACGTGTTCATCACTAGCTTTGGAGAGGTTCCTGGCATTATACTATCTGCGGCAATAGTGGACAAGATTGGGCGCAAACTCTCAATGTCCTCTATGCTTTATATCAGTTGCCTGTGCATAGCTCCCCTTATGGTCCCTCAAACAGAGTCCCTGACAACTATTTTCCTGTTCGGTGCAC GCATTTGCATCTCCGCA AGCTTCATTGTCTTGCACATCTATGCTCCTGAGATATACCCAACCGCAGTCAGGGCTACCGGAGTCGGGTTTGCGAGCTCAATCGCTCGTTTCGGTGGGATCTTGTG CCCTCTTGTGGCCGTTGGTTTGGTGCA CGCGT GCCATCAGACTGCA G CCA T CCTGATATTCAT CACGGTGATGC TCGTTT CAGGTGTTGCAGTTTCATACTTTCCCCTGGAAACAAGCGGCCGGAAATTGAGTGACCACATCGCGGCGTAAGAGCTAAGTTGCGAGCAGAATTTGACAGTGTTGCAAGTGCTAGTTTCTTTAGCTATACAAAATTACAGGATTGAGCTCCTAGAGGCCATTCAGA TTTTTTTTCTTTCAGTACGTTTAAAGATCATATATATAGAATAGAAATGAAAGATGGTGGATTTCAGATTTTAAAGGGCATTACATTGTTTTAACCAGACATATGTAAACTGCCAAATCGAGATGCTTGCTTTGCTCTCTTGAAATGGGACGATCAATATGT ]
[+] EMBL AU071259 [ GCGCAAACTCTCAATGTCCTCTATGCTTTATATCAGTTGCCTGTGCATAGCTCCCCTTATGGTCCCTCAAACAGAGTCCCTGACAACTATCTTCCTGTTCGGTGCAC GCATTTGCATCTCCGCA AGCTTCATTGTCTTGCACATCTATGCTCCTGAGATATACCCAACCGCAGTCAGGGCTACCGGAGTCGGGTTTGCGAGCTCAATCGCTCGTTTCGGTGGGATCTTGTG CCCTCTTGTGGCCGTTGGTTTGGTGCA CGCGT GCCATCAGACTGCA G CCA T CCTGATATTCAT CACGGTGATGC TCGTCT CAGGTGTTGCAGTCTCATACTTTCCCCTGGAAACAAGCGGCCGGAAATTGAGTGACCACATCGCGGTGTAAGAGCTAAGTTGCGAGCAGAATCTGACAGTGTTGCAAGTGCTAGTTTCTTTA ]
[+] EMBL CF331574 [ AGTCCCTGACAACTATCTTCCTGTTCGGTGCAC GCATTTGCATCTCCGCA AGCTTCATTGTCTTGCACATCTATGCTCCTGAGATATACCCAACCGCAGTCAGGGCTACCGGAGTCGGGTTTGCGAGCTCAATCGCTCGTTTCGGTGGGATCTTGTG CCCTCTTGTGGCCGTTGGTTTGGTGCA CGCGT GCCATCAGACTGCA G CCA T CCTGATATTCAT CACGGTGATGC TCGTCT CAGGTGTTGCAGTCTCATACTTTCCCCTGGAAACAAGCGGCCGGAAATTGAGTGACCACATCGCGGCGTAAGAGCTAAGTTGCGAGCAGAATCTGACAGTGTTGCAAGTGCTAGTTTCTTTAGCTATACAAAATTACAGGATTGAGCTCCTAGAGGCCATTCAGA TTTTTTTTTTCTTTCAGTTCGTTTAAAGATCATATATATAGAATAGAAATGAAAGATGGTGGATTTCAGATTTTAAATGTCATTACATTGTTTTAACCAGACATATGTAAACTGCCAAATCGAGATGCTTGCTTTGCTCTCTTGAAATGGGATGATC ]
[+] EMBL BI806333 [ ccgTGTTCGGTGCACAGCATTTGCATCTCCGCACGAGCTTCATTGTCTTGCACATCTATGCTCCTGAGATATACCC CCGCAGTCAGGGCTACCGGAGTCGGGTTTGCGAGCTCAATCGCTCGTTTCGGTGGGATCTTGTC CCCTCTTGT GCCCTTGGTTTGGTGCACCGCGT CCATCAGACT CA CCACT CCTGATATTCAT C CGGTGATGC TCGTCT CAGGTGTT CAGTCTCATACTTTCCCCTGGAAACCAGCGGCCGGAAATTGAGTGACCCCCTCGCGGCGTAAGAGCTAAGTTGCGA CNGAATCTGACCGTGTTGCCAGTGCTAGTTTCTTTAGCTATAC AAATTACCGGATTGAGCTCCTAGA GCCCTTCAGA TTTTTTTTTTCTTTC GTTCGTTTAAAGATCATATATATAGAATAGAAATGAAAGATGGTGGATTTCAGATTTTAAATGTC TTAC TTGTTTTAACC GACATATGTAAACT CC ATCGAGAT ]
[+] EMBL AU101711 [ TTGCACATCTATGCCCNTGAGATATACCCANCCGCATTCAGGGCTACCGGAGTCGGGTTTTCGAGCTCAATCGCTCGTTTCGGTGGGACCTTGTGCCCCTCTTNTGGCCGTTGGTTTGGTGCA CGCGT GCCATCAGACTGCA GCCCA TCCCTGATATTCATCCACGGTGATGC TCGTCTCCAGGTGTTGCAGTCTCATACTTTCCCCTGGAAACAAGCGGCCGGAAATTGAGTGACCACATCGCGGTGTAAGAGCTAAGTTGCGAGCAGAATCTGACAGTGTTGCAAGTGCTAGTTTCTTTAGCTATACAAAATTACAGGATTGAGCTCCTAGAGGCCATTCAGATTTTTTTTTTTTCTTTCAGTTCGTTTAAAGATCATATATATAGAATAGAAATGAAAGATGGTGGATTTCAGATTTTAAATGTCATTACATTGTTTTAACCAGACATATGTAAACTNCCAAATCGAGATGCTTGCTTTGCTCTCTTGAAATGGGATGATCAATATGTTTTGAAGGAAAAAAAAAAAAAAna ]
[+] EMBL BM421333 [ TTGTTTTGGTGCA CGCGTGGCCATCAGACTGCATG CCA T CCTGATATTCAT CACGGTGATGCGTCGTCT CAGGTGTTGCAGTCTCATACTTTCCCCTGGAAACAATCGGCCGGAAATTGAGTGACCACATCGCGGCTTAAGAGCTAAGTTGCGAGCAGAATCTGACTGTGTTGCAAGTGCTAGTTTTTTTAGCTATACCAAATTACAGGATTGAGCTCCTAGAGGCCATTCAGA TTTTTTTTTCTTTCAGTACGTTTAAAGATCATATATATAGAATAGAAATGAAAGATGGTGGATTTCAGATTTTAAATGTCATTACCTTGTTTTAACCAGACATATGT AACTGCCCAATCGAGATGCTTGCTTTGCTCTCTTGAAATGGGATGATCCATATGTTTTGAAGGAAAAAAAAAA ]
[+] EMBL AK121836 [ GCGGCGTAAGAGCTAAGTTGCGAGCAGAATCTGACAGTGTTGCAAGTGCTAGTTTCTTTAGCTATACAAAATTACAGGATTGAGCTCCTAGAGGCCATTCAGA TTTTTTTTTTCTTTCAGTTCGTTTAAAGATCATATATATAGAATAGAAATGAAAGATGGTGGATTTCAGATTTTAAATGTCATTACATTGTTTTAACCAGACATATGTAAACTGCCAAATCGAGATGCTTGCTTTGCTCTCTTGAAATGGGATGATCAATAT ]
[+] EMBL CF327077 [ AGCTATAC AAATTACAGGATTGAGCTCCTAGAGGCCATTCAGA TTTTTTTTTTCTTTCAGTTCGTTTAAAGATCATATATATAGAATAGAAATGAAAGATGGTGGATTTCAGATTTTAAATGTCATTACATTGTTTTAACCAGACATATGTAAACTGCCAAATCGAGATGCTTGCTTTGCTCTCTTGAAATGGGATGATCAATATGTTTTGAAGGAAAAAAAAAAAAAAAAAAAAAA ]
[-] EMBL CF327076 [ GCTATACAAAATTACAGGATTGAGGTCCTAAAGGCCATTCAGA TTTTTTTTTTTTTTCAGGTCGTTTAAAGGTCATATATATAGAATAGAAATGAAAGATGGGGGATTTCAGATTTTAAATGTCATTACATTGTTTTAACCAGACATATGTAAACTGCCCAATCGAGAAGCTTGCTTTGCTTTTTTGAAATGGGATGATCAATATGTTTTGAAGGAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 809 fasta sequence
[CCTAGAATTTCTGTATACGGAATTACGCGAAATTCGGCACGAGGGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTTCGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTGGGAAATTTCAAGCATTTGTGCTTGCATACTCCGGAATGGCCAAGATATCTGAGGCAATGGAAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAAGCTGAATGGGAGCTTTCTGCGCAGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGGTATGCTTGTAGGAGCATATTCTTGGGGCATAGTCTCAGACAACTATGGGAGAAGGGTTGGGTTCAATTTCACAGCCCTTGTAACTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCATGCTGAGGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAATTCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTGGCACAATAATGGAAGCTTCACTAGCTTGGGCTGTAATGCCAAGTTTGGGCTGGAGGTGGCTGCTAGCGTTCTCATCGTTGCCATCATTTGCTCTACTACTGTTCTATCCACTGACACTGGAATCACCAAGATACTTATGCATGAAGGGCAGAACTGCTGATGCGGTGCAGGTTTTGGAAACAATGGCACGATTAAACCGTGTAGCTCTCCCTTCTGGCCATCTTATGTCTGGCCATC]
[+] EMBL CB621489 [CCTAGAATTTCTGTATACGGAATTACGCGAAATTCGGCACGAGGGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTTCGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTGGGAAATTTCAAGCATTTGTGCTTGCATACTCCGGAATGGCCAAGATATCTGAGGCAATGGAAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAAGCTGAATGGGAGCTTTCTGCGCAGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGGTATGCTTGTAGGAGCATATTCTTGGGGCATAGTCTCAGACAACTATGGGAGAAGGGTTGGGTTCAATTTCACAGCCCTTGTAACTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCATGCTGAGGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAATTCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTGGCACAATAATGGAAGCTTCACTAGCTTGGGCTGTAATGCCAAGTTTGGGCTGGAGGTGGCTGCTAGCGTTCTCATCGTTGCCATCATTTGCTCTACTACTGTTCTATCCACTGACACTGGAATCACCAAGATACTTATGCATGAAGGGCAGAACTGCTGATGCGGTGCAGGTTTTGGAAACAATGGCACGATTAAACCGTGTAGCTCTCCCTTCTGGCCATCTTATGTCTGGCCATC]
[+] EMBL CB621627 [CCTAGAATTTCTGTATACGGAATTACGCGAAATTCGGCACGAGGGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTTCGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTGGGAAATTTCAAGCATTTGTGCTTGCATACTCCGGAATGGCCAAGATATCTGAGGCAATGGAAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAAGCTGAATGGGAGCTTTCTGCGCAGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGGTATGCTTGTAGGAGCATATTCTTGGGGCATAGTCTCAGACAACTATGGGAGAAGGGTTGGGTTCAATTTCACAGCCCTTGTAACTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCATGCTGAGGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAATTCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTGGCACAATAATGGAAGCTTCACTAGCTTGGGCTGTAATGCCAAGTTTGGGCTGGAGGTGGCTGCTAGCGTTCTCATCGTTGCCATCATTTGCTCTACTACTGTTCTATCCACTGACACTGGAATCACCAAGATACTTATGCATGAAGGGCAGAACTGCTGATGCGGTGCAGGTTTTGGAAA ]
[+] EMBL CB621491 [CCTAGAATTTCTGTATACGGAATTACGCGAAATTCGGCACGAGGGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTTCGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTGGGAAATTTCAAGCATTTGTGCTTGCATACTCCGGAATGGCCAAGATATCTGAGGCAATGGAAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAAGCTGAATGGGAGCTTTCTGCGCAGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGGTATGCTTGTAGGAGCATATTCTTGGGGCATAGTCTCAGACAACTATGGGAGAAGGGTTGGGTTCAATTTCACAGCCCTTGTAACTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCATGCTGAGGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAATTCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTGGCACAATAATGG ]
consensusID : consensus_14902#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[TCGTCGTCCTCGAAACGCTCGCGGCGACTCCGGTGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTTCGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTGGGAAATTTCAAGCATTTGTGCTTGCGTACTCCGGAATGGCCAAGATATCTGAGGCAATGGAAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAAGCTGAATGGGAGCTTTCTGCGCAGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGGTATGCTTGTAGGAGCATATTCTTGGGGCATAGTCTCAGACAACTATGGGAGAAGGGTTGGGTTCAATTTCACAGCCCTTGTAACTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCGTGCTGAGGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAATTCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTGGCACAATAATGGAAGCTTCACTAGCTTGGGTAAATTTCTACATTTTGCCAAAGCTGTAATGCCAAGTTTGGGCTGGAGGTGGCTGCTAGCGTTCTCATCGTTGCCATCA]
[+] EMBL CB655236 [TCGTCGTCCTCGAAACGCTCGCGGCGACTCCGGTGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTTCGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTGGGAAATTTCAAGCATTTGTGCTTGCGTACTCCGGAATGGCCAAGATATCTGAGGCAATGGAAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAAGCTGAATGGGAGCTTTCTGCGCAGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGGTATGCTTGTAGGAGCATATTCTTGGGGCATAGTCTCAGACAACTATGGGAGAAGGGTTGGGTTCAATTTCACAGCCCTTGTAACTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCGTGCTGAGGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAATTCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTGGCACAATAATGGAAGCTTCACTAGCTTGGGTAAATTTCTACATTTTGCCAAAGCTGTAATGCCAAGTTTGGGCTGGAGGTGGCTGCTAGCGTTCTCATCGTTGCCATCA]
consensusID : consensus_14902#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[GTGTAGAAAATGGTCAACAACCGAGAGCTCGCTAGTCGTCGTCCTCGAAACGCTCGCGGCGACTCCGGTGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTTCGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTGGGAAATTTCAAGCATTTGTGCTTGCGTACTCCGGAATGGCCAAGATATCTGAGGCAATGGAAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAAGCTGAATGGGAGCTTTCTGCGCAGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGGGTTGGGTTCAATTTCACAGCCCTTGTAACTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCGTGCTGAGGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAATTCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTGGCACAATAATGG]
[+] EMBL CF316755 [GTGTAGAAAATGGTCAACAACCGAGAGCTCGCTAGTCGTCGTCCTCGAAACGCTCGCGGCGACTCCGGTGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTTCGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTGGGAAATTTCAAGCATTTGTGCTTGCGTACTCCGGAATGGCCAAGATATCTGAGGCAATGGAAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAAGCTGAATGGGAGCTTTCTGCGCAGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGGGTTGGGTTCAATTTCACAGCCCTTGTAACTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCGTGCTGAGGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAATTCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTGGCACAATAATGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14902#0 ----------------ACAACCGAGAGCTCGCTAGTCGTCGTCCTCGAAA---CGCTCGC 41
consensus_14902#3 GTGTAGAAAATGGTCAACAACCGAGAGCTCGCTAGTCGTCGTCCTCGAAA---CGCTCGC 57
consensus_14902#2 -----------------------------------TCGTCGTCCTCGAAA---CGCTCGC 22
consensus_14902#1 ----------------------------CCTAGAATTTCTGTATACGGAATTACGCGAAA 32
* ** ** ** ***
consensus_14902#0 GGCGACTCCGGTGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTT 101
consensus_14902#3 GGCGACTCCGGTGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTT 117
consensus_14902#2 GGCGACTCCGGTGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTT 82
consensus_14902#1 TTCGGCACGAGGGGCTGCCGCGCCGCCGCCTCCGGCCGCCGTACCAGCCTCACCTCGCTT 92
** * * * ************************************************
consensus_14902#0 CGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTG 161
consensus_14902#3 CGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTG 177
consensus_14902#2 CGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTG 142
consensus_14902#1 CGATGGAGGATGGAGTGTCTACTTATACTGTTGATGAGGCTCTTATTTCCATGGGGTTTG 152
************************************************************
consensus_14902#0 GGAAATTTCAAGCATTTGTGCTTGCGTACTCCGGAATGGCCAAGATATCTGAGGCAATGG 221
consensus_14902#3 GGAAATTTCAAGCATTTGTGCTTGCGTACTCCGGAATGGCCAAGATATCTGAGGCAATGG 237
consensus_14902#2 GGAAATTTCAAGCATTTGTGCTTGCGTACTCCGGAATGGCCAAGATATCTGAGGCAATGG 202
consensus_14902#1 GGAAATTTCAAGCATTTGTGCTTGCATACTCCGGAATGGCCAAGATATCTGAGGCAATGG 212
************************* **********************************
consensus_14902#0 AAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAGGCTGAATGGGAGCTTTCTGCGC 281
consensus_14902#3 AAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAAGCTGAATGGGAGCTTTCTGCGC 297
consensus_14902#2 AAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAAGCTGAATGGGAGCTTTCTGCGC 262
consensus_14902#1 AAATGATGCTTTTGTCATTTGTTGGACAGTCGGTTCAAGCTGAATGGGAGCTTTCTGCGC 272
************************************* **********************
consensus_14902#0 AGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGGTATGCTTGTAGGAGCATATTCTT 341
consensus_14902#3 AGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGG----------------------- 334
consensus_14902#2 AGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGGTATGCTTGTAGGAGCATATTCTT 322
consensus_14902#1 AGGCAGAATCTCTCATCACAAGTGTTGTTTTTGTAGGTATGCTTGTAGGAGCATATTCTT 332
*************************************
consensus_14902#0 GGGGCATAGTCTCAGACAACTATGGGAGAAGGGTTGGGTTCAATTTCACAGCCCTTGTAA 401
consensus_14902#3 --------------------------------GTTGGGTTCAATTTCACAGCCCTTGTAA 362
consensus_14902#2 GGGGCATAGTCTCAGACAACTATGGGAGAAGGGTTGGGTTCAATTTCACAGCCCTTGTAA 382
consensus_14902#1 GGGGCATAGTCTCAGACAACTATGGGAGAAGGGTTGGGTTCAATTTCACAGCCCTTGTAA 392
****************************
consensus_14902#0 CTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCGTGCTGA 461
consensus_14902#3 CTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCGTGCTGA 422
consensus_14902#2 CTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCGTGCTGA 442
consensus_14902#1 CTGGTGGGGCTGGTCTTCTTAGTGCATTTGCACCAAATTACCTTTCTTTGATCATGCTGA 452
***************************************************** ******
consensus_14902#0 GGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAAT 521
consensus_14902#3 GGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAAT 482
consensus_14902#2 GGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAAT 502
consensus_14902#1 GGTTTATGGTTGGTGTTGGACTGGGTGGTGGACCAGTTTTATCTTCCTGGTTTTTGGAAT 512
************************************************************
consensus_14902#0 TCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTG 581
consensus_14902#3 TCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTG 542
consensus_14902#2 TCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTG 562
consensus_14902#1 TCATTCCTGCTCCTAACCGAGGAACTTGGATGGTTATTTTCTCAGCATTTTGGACCATTG 572
************************************************************
consensus_14902#0 GCACAATAATGGAAGCTTCACTAGCTTGGG-CTGTAGTGCCAAGTTTGGGCTGGAGGTGG 640
consensus_14902#3 GCACAATAATGG------------------------------------------------ 554
consensus_14902#2 GCACAATAATGGAAGCTTCACTAGCTTGGG-TAAATTTCTACATTTTGCCAAAGCTGTAA 621
consensus_14902#1 GCACAATAATGGAAGCTTCACTAGCTTGGGCTGTAATGCCAAGTTTGGGCTGGAGGTGGC 632
************
consensus_14902#0 CTGCTAGCGTTCTCATCGTTGCCATCATTTGCTCTACTACTGTTCTATCCACTGACACTG 700
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 TGCCAAGTTTGGGCTGGAGGTGGCTGCTAGCGTTCTCATCGTTGCCATCA---------- 671
consensus_14902#1 TGCTAGCGTTCTCATCGTTGCCATCATTTGCTCTACTACTGTTCTATCCACTGACACTGG 692
consensus_14902#0 GAATCACCAAGATACTTATGCATGAAGGGCAGAACTGCTGATGCGGTGCAGGTTTTGGAA 760
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 AATCACCAAGATACTTATGCATGAAGGGCAGAACTGCTGATGCGGTGCAGGTTTTGGAAA 752
consensus_14902#0 ACAATGGCACGATTAAACCGTGTAGCTCTCCCTTCTGGCCATCTTATGTCTGGCCATCGA 820
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 CAATGGCACGATTAAACCGTGTAGCTCTCCCTTCTGGCCATCTTATGTCTGGCCATC--- 809
consensus_14902#0 ATGGAGCTCCATGAGTTGACAGATTCCTCAGAGACGTCACAGTTGCTTTCTGCTAAGAAA 880
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 ACCAACCCTGCTGCTCATTCTAGCAAACCGAGATTGGGGGCCGCAATGCGATTTTAAAGC 940
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 TTCTGTCCCCAAATTTAATTAGATCTAGTCTTCTTCTTTGGACTGTCTTTCTTGGTCATG 1000
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 CCTTCTTATACTACGGTCTTGTTCTACTAACCTCGGAATTGAGTCATGGAAATAAGATTT 1060
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 GTGGATCAGAGGGGATAGTAACAATGCAAACAAACCACTCAAACGATGCTAATCTGTACA 1120
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 GAAACGTGTTCATCACTAGCTTTGGAGAGGTTCCTGGCATTATACTATCTGCGGCAATAG 1180
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 TGGACAAGATTGGGCGCAAACTCTCAATGTCCTCTATGCTTTATATCAGTTGCCTGTGCA 1240
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 TAGCTCCCCTTATGGTCCCTCAAACAGAGTCCCTGACAACTATCTTCCTGTTCGGTGCAC 1300
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 GCATTTGCATCTCCGCAAGCTTCATTGTCTTGCACATCTATGCTCCTGAGATATACCCAA 1360
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 CCGCAGTCAGGGCTACCGGAGTCGGGTTTGCGAGCTCAATCGCTCGTTTCGGTGGGATCT 1420
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 TGTGCCCTCTTGTGGCCGTTGGTTTGGTGCACGCGTGCCATCAGACTGCAGCCATCCTGA 1480
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 TATTCATCACGGTGATGCTCGTCTCAGGTGTTGCAGTCTCATACTTTCCCCTGGAAACAA 1540
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 GCGGCCGGAAATTGAGTGACCACATCGCGGCGTAAGAGCTAAGTTGCGAGCAGAATCTGA 1600
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 CAGTGTTGCAAGTGCTAGTTTCTTTAGCTATACAAAATTACAGGATTGAGCTCCTAGAGG 1660
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 CCATTCAGATTTTTTTTTTCTTTCAGTTCGTTTAAAGATCATATATATAGAATAGAAATG 1720
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 AAAGATGGTGGATTTCAGATTTTAAATGTCATTACATTGTTTTAACCAGACATATGTAAA 1780
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 CTGCCAAATCGAGATGCTTGCTTTGCTCTCTTGAAATGGGATGATCAATATGTTTTGAAG 1840
consensus_14902#3 ------------------------------------------------------------
consensus_14902#2 ------------------------------------------------------------
consensus_14902#1 ------------------------------------------------------------
consensus_14902#0 GAAAAAAAAAAAAAAAAAAAAAAA 1864
consensus_14902#3 ------------------------
consensus_14902#2 ------------------------
consensus_14902#1 ------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||