These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 591 fasta sequence [CGACGCAGTGCCACTGGTGTTATCGCACTAAAGGGAATAGCTTGCCG-TC-CCACTTGAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC-TACTTTG-TTTGGCGGGCACCACTTTCTCTCT-GTTTCAA-ACT-ATTCG-CCAGACGGCCATG-AAAGG-ACGCTTACCTTG-AAG-AAGCGGTTTTCAG-A-AG-AGCAGAT-CATCGG-TTTTTTG-CAG-CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA-TGGTGAT] [+] EMBL CB965807 [CGACGCAGTGCCACTGGTGTTATCGCACTAAAGGGAATACCTTGGCG TA CCACTTGAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT] [+] EMBL BI306325 [ aTTAACCCTCCTAAGGGAATAGCTTGCCG CC GCCCTTGAACA CATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT] [+] EMBL BU673236 [ AGGGAATAGCTTGCCGCTG CCACTTGAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT] [+] EMBL BU673591 [ AGGGAATAGCTTGCCG T GCACTTGAACACCATGTTCGTGTTCAGCCCGTA CGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCCG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT] [+] EMBL BU673298 [ AATAGC TG CG TT ACACTTGAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT] [+] EMBL BI305979 [ tataAGCTTGCCG CCGCCACTTGAACA CATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTGTC ] [+] EMBL BI305585 [ CG CC GCCCTTGAACA CATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT] [+] EMBL BI306461 [ TTGAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT] [+] EMBL CB964480 [ TTGAACACCATG TCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT] [+] EMBL BU672924 [ TTGAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCATTGGTGAT] [+] EMBL CB966256 [ GAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGGCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT] [+] EMBL CB967018 [ CACCATGTTCGTGTTCAG CCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT] [+] EMBL CB966596 [ CACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGG TTTCAG A AG AGCAGAT CATCGGCTTTCTCG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCC ] [+] EMBL CB965831 [ ACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGCATACTTTGTTTTGGCGGGCACCACTTTCTCTCTNGTTTCAACACTCATTCGCCCACACGGCCATGCAAAGGCACGCTTACCTTGCAAGCAAGCGGTTTTCAGCACAGCAGCAGATCCATCGG TTTTTTGCCAGCCAGGCGGAAG ] [+] EMBL CB965101 [ ACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATT ] [+] EMBL BI306713 [ CATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT] [+] EMBL CB964539 [ CATG TCGTG TCAG CCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT] [-] EMBL BU672798 [ TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||