These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 701 fasta sequence [TTTCAAGGCCTCCTCGATCGATCGATCGATCGAATTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAG-TTGTCTCTGTTGGCCGCT-CGTTGCGACCACG-CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG-ATGGCAGAGTTACCACC--AAATGA-TGATGCCATTGT-CATGCAAGACAAGGA-GGAGGAAGTTGAA-GAAAAGATCGTCGAGGA-GGAGAAGCCTTCAGCCCCAGCTGC-AGA-GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACATATGTCGACCATCTAAAAAAAG] [+] EMBL AK071790 [TTTCAAGGCCTCCTCGATCGATCGATCGATCGAATTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAG TTGTCTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGT ] [+] EMBL AU082141 [ TCGATCGATCGATCGATCGAATTGATCGATTAATCTCNTCCTCCACCAACCAATAATATAATCCAG TTGTCTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACATATGTCGACCATCTAAAAAAA ] [+] EMBL AU063789 [ GATCGATCGATCGATCGATTTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAN TTGTNTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGC ACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTNANACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTNANAAGGTAGTGGAGGAGGCCACCGCGAATGGCAGAGTTACCACCCAAAATNATTGATGCCATTNTAAATGCAAGACAAGGA GGAGGAAGTTNAAGGAAAAGATCG ] [+] EMBL AU064097 [ GATCGATCGATCGATCGANTTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAG TTGTCTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATNA TGATGCCATTGT NATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCANGCCCAACTTC AGAGGGTG ACAA ] [+] EMBL AU082142 [ ATCGATCGATCGAATTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAG TTGTCTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAA CCAATTCAGAGCTGATAAACGACCATGTAA ] [+] EMBL AU064016 [ ATCGATCGATCGANTTGATCGATTAATCTCCTCCTCCACCAACCANTAATATAATCCAN TTGTNTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGC ACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTNT NATGCAAGACAAGGAGGGAGGAAGTTGAAGGAAAAGNTCGTCGAGGAGGGAGAAGCCTTCAGCCCCAGCTNCAAGA GGTGACCAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAG ACACCGAGGT ] [+] EMBL AU064964 [ ATCGATCGATCGAATTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAG TTGTCTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAG TNC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAG ACACCGAGGTGG ] [+] EMBL AU064109 [ ATCGATCGATCGANTTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAG TTGTCTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GGAAAGNTCGTCGAGGA GGAGAAGCtt ] [+] EMBL AU082138 [ tTAATCCAGTTTGTCTCTGTTGGCCGCTCCGTTGCGACCACGCCCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACATAaaaaa ] [+] EMBL AU082143 [ TAATCCAG TTGTCTCTGTTGNCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACATATGTCGACCATCTAAAAA ] [+] EMBL AU182501 [ GGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACATATGTCGACCATCTAAAAAAA ] [+] EMBL AU183052 [ GGAGGAGGCCACCGCGAATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACATATGTCGACCATCTAAAAAAA ] [+] EMBL CB096432 [ GGTGAAGAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA GACCATGTAAATTGGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAGAACAATGAACATATGTCGACCATCTAAttaagg] consensusID : consensus_14929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [AGCCCCACTCAAGGGGGCCGGAAAGGTTAAGATCCCCGAGGAGGAGAAGCCAATTCAGAGGGGATAAGACCATGTAAATTGGCCCCATGGTAATATACGCTCATCCTTTTGCGTGTAATCCTTTAGGGGTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCCTGTAATGGTTGGAAGTCACCCCTTTTTCCTCCGCGGGATGTTAATGAAAAGCAATGAACATATGTCGCCCTTTTACTTAAGGATAAAAAAAAAAAAAAAAAAA] [-] EMBL CA761810 [AGCCCCACTCAAGGGGGCCGGAAAGGTTAAGATCCCCGAGGAGGAGAAGCCAATTCAGAGGGGATAAGACCATGTAAATTGGCCCCATGGTAATATACGCTCATCCTTTTGCGTGTAATCCTTTAGGGGTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCCTGTAATGGTTGGAAGTCACCCCTTTTTCCTCCGCGGGATGTTAATGAAAAGCAATGAACATATGTCGCCCTTTTACTTAAGGATAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14929#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 269 fasta sequence [GACAAGGGAGAGGACGAGACAAGGGGACCACAGAGGTGAAGAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA--GACCATGTAAATTGGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB096579 [GACAAGGGGGAGGACGAGACAAGGGGACCACAGAGGTGAAGAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA GACCATGT AATTGGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACAAA ] [-] EMBL CA759921 [ AGAGGACGAGACAAGGGGACCACAGAGGTGAAGAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA GACCATGTAAATTGGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACAAAAAAAAAAAA ] [-] EMBL CA759922 [ AGAGGACGAGACAAGGGGACCACAGAGGTGAAGAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA GACCATGTAAATTGGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACAAAAAAAAAAAA ] [+] EMBL CB097158 [ AAGGGGACCACAGAGGTGAAGAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA GACCATGTAAATTGGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCATG ] [+] EMBL AU082140 [ ACTCCGAGGAGGAGAAGCCAATTCAGAGNTGATAAACGNCCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGNGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAANCAATGAACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14929#1 ------------------------------------------------------------ consensus_14929#2 ------------------------------------------------------------ consensus_14929#0 TTTCAAGGCCTCCTCGATCGATCGATCGATCGAATTGATCGATTAATCTCCTCCTCCACC 60 consensus_14929#1 ------------------------------------------------------------ consensus_14929#2 ------------------------------------------------------------ consensus_14929#0 AACCAATAATATAATCCAGTTGTCTCTGTTGGCCGCTCGTTGCGACCACGCCACTACAGT 120 consensus_14929#1 ------------------------------------------------------------ consensus_14929#2 ------------------------------------------------------------ consensus_14929#0 CGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGA 180 consensus_14929#1 ------------------------------------------------------------ consensus_14929#2 ------------------------------------------------------------ consensus_14929#0 GGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAA 240 consensus_14929#1 ------------------------------------------------------------ consensus_14929#2 ------------------------------------------------------------ consensus_14929#0 TAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCGATGGC 300 consensus_14929#1 ------------------------------------------------------------ consensus_14929#2 ------------------------------------------------------------ consensus_14929#0 AGAGTTACCACCAAATGATGATGCCATTGTCATGCAAGACAAGGAGGAGGAAGTTGAAGA 360 consensus_14929#1 ------------------------------------------------------------ consensus_14929#2 ------------------------------------------------------------ consensus_14929#0 AAAGATCGTCGAGGAGGAGAAGCCTTCAGCCCCAGCTGCAGAGGTGAACAATACCGAGGT 420 consensus_14929#1 ------------------------------AGCCCCACTCAAGGGGGCCGGAAAGGTTAA 30 consensus_14929#2 --------------------GACAAGGGAGAGGACGAGACAAGGGGACCACAGAGGTGAA 40 consensus_14929#0 GGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAA 480 * ******* ** * **** ** consensus_14929#1 GATCCCCGAGGAGGAGAAGCCAATTCAGAGGGGATAA--GACCATGTAAATTGGCCCCAT 88 consensus_14929#2 GAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA--GACCATGTAAATTGGCTCCAT 98 consensus_14929#0 GAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCAT 540 ** * ************************* ***** ************* ** **** consensus_14929#1 GGTAATATACGCTCATCCTTTTGCGTGTAATCCTTTAGGGGTGGCATATATGTCTAGCTC 148 consensus_14929#2 GATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTC 158 consensus_14929#0 GATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTC 600 * * ***** ********** ************ ****** ********** ***** ** consensus_14929#1 CGTGTGACATGGATTAACCCTGTAATGGTTGGAAGTCACCCCTTTTTCCTCCGCGGGATG 208 consensus_14929#2 CGTGTGACATGGATTAACCATGTAATCTTTG-ATGTCACCCCTTTTTCCTCCACGGGATC 217 consensus_14929#0 CATGTGACATGGATGAACCATGTAATCTTTG-ATGTCACCCCTTTTTCCTCCACGGGATC 659 * ************ **** ****** *** * ****************** ****** consensus_14929#1 TTAATGAAAAGCAATGAACATATGTCGCCCTTTTACTTAAGGATAAAAAAAAAAAAAAAA 268 consensus_14929#2 TTAATGAAAAACAATGAACAAAAAAAA-----------AAAAAAAAAAAAAAAAAAAAAA 266 consensus_14929#0 TTAATGAAAAACAATGAACATATGTCG------------ACCATCTAAAAAAAG------ 701 ********** ********* * * * ******* consensus_14929#1 AAA 271 consensus_14929#2 AAA 269 consensus_14929#0 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||