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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 701 fasta sequence
[TTTCAAGGCCTCCTCGATCGATCGATCGATCGAATTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAG-TTGTCTCTGTTGGCCGCT-CGTTGCGACCACG-CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG-ATGGCAGAGTTACCACC--AAATGA-TGATGCCATTGT-CATGCAAGACAAGGA-GGAGGAAGTTGAA-GAAAAGATCGTCGAGGA-GGAGAAGCCTTCAGCCCCAGCTGC-AGA-GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACATATGTCGACCATCTAAAAAAAG]
[+] EMBL AK071790 [TTTCAAGGCCTCCTCGATCGATCGATCGATCGAATTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAG TTGTCTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGT ]
[+] EMBL AU082141 [ TCGATCGATCGATCGATCGAATTGATCGATTAATCTCNTCCTCCACCAACCAATAATATAATCCAG TTGTCTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACATATGTCGACCATCTAAAAAAA ]
[+] EMBL AU063789 [ GATCGATCGATCGATCGATTTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAN TTGTNTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGC ACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTNANACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTNANAAGGTAGTGGAGGAGGCCACCGCGAATGGCAGAGTTACCACCCAAAATNATTGATGCCATTNTAAATGCAAGACAAGGA GGAGGAAGTTNAAGGAAAAGATCG ]
[+] EMBL AU064097 [ GATCGATCGATCGATCGANTTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAG TTGTCTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATNA TGATGCCATTGT NATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCANGCCCAACTTC AGAGGGTG ACAA ]
[+] EMBL AU082142 [ ATCGATCGATCGAATTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAG TTGTCTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAA CCAATTCAGAGCTGATAAACGACCATGTAA ]
[+] EMBL AU064016 [ ATCGATCGATCGANTTGATCGATTAATCTCCTCCTCCACCAACCANTAATATAATCCAN TTGTNTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGC ACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTNT NATGCAAGACAAGGAGGGAGGAAGTTGAAGGAAAAGNTCGTCGAGGAGGGAGAAGCCTTCAGCCCCAGCTNCAAGA GGTGACCAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAG ACACCGAGGT ]
[+] EMBL AU064964 [ ATCGATCGATCGAATTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAG TTGTCTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAG TNC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAG ACACCGAGGTGG ]
[+] EMBL AU064109 [ ATCGATCGATCGANTTGATCGATTAATCTCCTCCTCCACCAACCAATAATATAATCCAG TTGTCTCTGTTGGCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GGAAAGNTCGTCGAGGA GGAGAAGCtt ]
[+] EMBL AU082138 [ tTAATCCAGTTTGTCTCTGTTGGCCGCTCCGTTGCGACCACGCCCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACATAaaaaa ]
[+] EMBL AU082143 [ TAATCCAG TTGTCTCTGTTGNCCGCT CGTTGCGACCACG CCACTACAGTCGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGAGGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAATAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACATATGTCGACCATCTAAAAA ]
[+] EMBL AU182501 [ GGAGGAGGCCACCGCG ATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACATATGTCGACCATCTAAAAAAA ]
[+] EMBL AU183052 [ GGAGGAGGCCACCGCGAATGGCAGAGTTACCACC AAATGA TGATGCCATTGT CATGCAAGACAAGGA GGAGGAAGTTGAA GAAAAGATCGTCGAGGA GGAGAAGCCTTCAGCCCCAGCTGC AGA GGTGAACAATACCGAGGTGGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAAGAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACATATGTCGACCATCTAAAAAAA ]
[+] EMBL CB096432 [ GGTGAAGAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA GACCATGTAAATTGGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAGAACAATGAACATATGTCGACCATCTAAttaagg]
consensusID : consensus_14929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence
[AGCCCCACTCAAGGGGGCCGGAAAGGTTAAGATCCCCGAGGAGGAGAAGCCAATTCAGAGGGGATAAGACCATGTAAATTGGCCCCATGGTAATATACGCTCATCCTTTTGCGTGTAATCCTTTAGGGGTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCCTGTAATGGTTGGAAGTCACCCCTTTTTCCTCCGCGGGATGTTAATGAAAAGCAATGAACATATGTCGCCCTTTTACTTAAGGATAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761810 [AGCCCCACTCAAGGGGGCCGGAAAGGTTAAGATCCCCGAGGAGGAGAAGCCAATTCAGAGGGGATAAGACCATGTAAATTGGCCCCATGGTAATATACGCTCATCCTTTTGCGTGTAATCCTTTAGGGGTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCCTGTAATGGTTGGAAGTCACCCCTTTTTCCTCCGCGGGATGTTAATGAAAAGCAATGAACATATGTCGCCCTTTTACTTAAGGATAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14929#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 269 fasta sequence
[GACAAGGGAGAGGACGAGACAAGGGGACCACAGAGGTGAAGAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA--GACCATGTAAATTGGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB096579 [GACAAGGGGGAGGACGAGACAAGGGGACCACAGAGGTGAAGAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA GACCATGT AATTGGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACAAA ]
[-] EMBL CA759921 [ AGAGGACGAGACAAGGGGACCACAGAGGTGAAGAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA GACCATGTAAATTGGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACAAAAAAAAAAAA ]
[-] EMBL CA759922 [ AGAGGACGAGACAAGGGGACCACAGAGGTGAAGAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA GACCATGTAAATTGGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAAACAATGAACAAAAAAAAAAAA ]
[+] EMBL CB097158 [ AAGGGGACCACAGAGGTGAAGAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA GACCATGTAAATTGGCTCCATGATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTCCGTGTGACATGGATTAACCATG ]
[+] EMBL AU082140 [ ACTCCGAGGAGGAGAAGCCAATTCAGAGNTGATAAACGNCCATGTAAATTCGCTCCATGATTATATATGCTCATCCTTATGNGTGTAATCCATTAGGGTTGGCATATATATCTAGTTCCATGTGACATGGATGAACCATGTAATCTTTGATGTCACCCCTTTTTCCTCCACGGGATCTTAATGAAAANCAATGAACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14929#1 ------------------------------------------------------------
consensus_14929#2 ------------------------------------------------------------
consensus_14929#0 TTTCAAGGCCTCCTCGATCGATCGATCGATCGAATTGATCGATTAATCTCCTCCTCCACC 60
consensus_14929#1 ------------------------------------------------------------
consensus_14929#2 ------------------------------------------------------------
consensus_14929#0 AACCAATAATATAATCCAGTTGTCTCTGTTGGCCGCTCGTTGCGACCACGCCACTACAGT 120
consensus_14929#1 ------------------------------------------------------------
consensus_14929#2 ------------------------------------------------------------
consensus_14929#0 CGGGGCAACCATGGGTGCTTGTGCAACCAAGCCCAAGACGCTCGAGGGAAAGGCTCCCGA 180
consensus_14929#1 ------------------------------------------------------------
consensus_14929#2 ------------------------------------------------------------
consensus_14929#0 GGAGGCCACTCCCATTGAGGCAGCACCCAAGGTTGCCCTTGAGACCACAATGATCTCCAA 240
consensus_14929#1 ------------------------------------------------------------
consensus_14929#2 ------------------------------------------------------------
consensus_14929#0 TAAGGAGGTTGTGGCTGATCAAGCACCTGAGAAGGTAGTGGAGGAGGCCACCGCGATGGC 300
consensus_14929#1 ------------------------------------------------------------
consensus_14929#2 ------------------------------------------------------------
consensus_14929#0 AGAGTTACCACCAAATGATGATGCCATTGTCATGCAAGACAAGGAGGAGGAAGTTGAAGA 360
consensus_14929#1 ------------------------------------------------------------
consensus_14929#2 ------------------------------------------------------------
consensus_14929#0 AAAGATCGTCGAGGAGGAGAAGCCTTCAGCCCCAGCTGCAGAGGTGAACAATACCGAGGT 420
consensus_14929#1 ------------------------------AGCCCCACTCAAGGGGGCCGGAAAGGTTAA 30
consensus_14929#2 --------------------GACAAGGGAGAGGACGAGACAAGGGGACCACAGAGGTGAA 40
consensus_14929#0 GGTCGAGGAGACCATAGAGGTAAAGAACACCGAGGTGGACAAGGGGACCACAGAGGTGAA 480
* ******* ** * **** **
consensus_14929#1 GATCCCCGAGGAGGAGAAGCCAATTCAGAGGGGATAA--GACCATGTAAATTGGCCCCAT 88
consensus_14929#2 GAACACCGAGGAGGAGAAGCCAATTCAGAGCTGATAA--GACCATGTAAATTGGCTCCAT 98
consensus_14929#0 GAACTCCGAGGAGGAGAAGCCAATTCAGAGCTGATAAACGACCATGTAAATTCGCTCCAT 540
** * ************************* ***** ************* ** ****
consensus_14929#1 GGTAATATACGCTCATCCTTTTGCGTGTAATCCTTTAGGGGTGGCATATATGTCTAGCTC 148
consensus_14929#2 GATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATGTCTAGCTC 158
consensus_14929#0 GATTATATATGCTCATCCTTATGCGTGTAATCCATTAGGGTTGGCATATATATCTAGTTC 600
* * ***** ********** ************ ****** ********** ***** **
consensus_14929#1 CGTGTGACATGGATTAACCCTGTAATGGTTGGAAGTCACCCCTTTTTCCTCCGCGGGATG 208
consensus_14929#2 CGTGTGACATGGATTAACCATGTAATCTTTG-ATGTCACCCCTTTTTCCTCCACGGGATC 217
consensus_14929#0 CATGTGACATGGATGAACCATGTAATCTTTG-ATGTCACCCCTTTTTCCTCCACGGGATC 659
* ************ **** ****** *** * ****************** ******
consensus_14929#1 TTAATGAAAAGCAATGAACATATGTCGCCCTTTTACTTAAGGATAAAAAAAAAAAAAAAA 268
consensus_14929#2 TTAATGAAAAACAATGAACAAAAAAAA-----------AAAAAAAAAAAAAAAAAAAAAA 266
consensus_14929#0 TTAATGAAAAACAATGAACATATGTCG------------ACCATCTAAAAAAAG------ 701
********** ********* * * * *******
consensus_14929#1 AAA 271
consensus_14929#2 AAA 269
consensus_14929#0 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||