|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14940#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 431 fasta sequence
[CAATGAGTAGTTTGTATTTCCAGAAATTATACTTTTAAAACTGGCTAAAGCAGAACATTAGGCCAGTGTCAACAAATGCTAAGGCAAAAGGTGCATAATCCAATGTTTGTCCAATGTAACAACTCAAAACTT-GA-CACAA-ATAGTTCCTCTC-GTACAAGTTT-TGTTCT-GTTTGGCATTA-GGCCGCCGG-ATTCTTAT-T-GTAA-A-GCTCAAATCCTCGGTATCCCAACACAAGGGGTAGAAAAAAGCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATGAGTTGCTAGTCTGCAAAATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCCCTTAAGATTCTCCAGTTCCTTACNCTTCTCAAAAGTCTGGACAGCTGGGCCCAACCCNAAGAACTTCCTCAACT]
[+] EMBL CB685387 [CAATGAGTAGTTTGTATTTCCAGAAATTATACCTTTAAAACTGGCTAAAGCAGAACATTAGGCCAGTGTCAACAAATGCTAAGGCAAAAGGTGCATAATCCAATGTTTGTCCAATGTAACAACTCAAAACTT GA CACAA ATAGTTCCTCTC GTACAAGTTT TGTTCT GTTTGGCATTA GGCCGCCGG ATTCTTAT T GTAA A GCTCAAATCCTCGGTATCCCAACACAAGGGGTAAAAAAAAGCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATGAGTTGCTAGTCTGCAAAATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCCCTTAAGAT ]
[-] EMBL BI800523 [ tgGTATTTCCAGAAATTATAGTTTTAAAACTGGCTAAAGCAGAACATTAGGCCAGTGTCAACAAATGCTAAGGACAAAGGTGCATAATCCAATG TTGTCCAATGTAACAACTCAAAACTT GACCACAACATAGTTCCTCTC GTACAAG TT TGTTCT GTTGGGCATTA GGCCGCCGG ATTCTTA T GTAACA GCTCAAATCCTCGGTATCCCAACACAAGGGGTAGAAAAAAGCATCAA ]
[-] EMBL CF299168 [ tTTTTAAAACTGGCTAAAGCAGAACATTAGGCCAGTGTCAACAAATGCTAAGGCAAAAGGTGCATAATCCAATGTTTGTCCAATGTAACAACTCAAAACTT GA CACAA ATAGTTCCTCTC GTACAAGTTT TGTTCT GTTTGGCATTA GGCCGCCGG ATTCTTAT T GTAA A GCTCAAATCCTCGGTATCCCAACACAAGGGGT ]
[+] EMBL CB965497 [ ACTGGCTAAAGCAGAACATTAGGCCAGTGTCAACAAATGCTAAGGCAAAAGGTGCATAATCCAATGTTGGTCCAATGTAACAACTCAAAACTT GA CACAA ATAGTTCCTCTCGGTACAAGTTTGGGTTCTGGTGGGGCATTAGGGCCGCCGGNATTCTTATGTGGTAA AGGCTCAAATCCT ]
[-] EMBL AU164646 [ tttttttttTGCTAAGGCAAAAGGTGCATAATCCAATGTTTGTCCAATGTAACAACTCAAAACTT GA CACAA ATAGTTCCTCTC GTACAAGTTT TGTTCT GTTTGGCATTA GGCCGCCGG ATTCTTAT T GTAA A GCTCAAATCCTCGGTATCCCAACACAAGGGGTAGAAAAAAGCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATGAGTTGCTAGTCTGCAAAATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCCCTTAAGATT ]
[-] EMBL AU164642 [ tttttttttTGCTAAGGCAAAAGGTGCATAATCCAATGTTTGTCCAATGTAACAACTCAAAACTT GA CACAA ATAGTTCCTCTC GTACAAGTTT TGTTCT GTTTGGCATTA GGCCGCCGG ATTCTTAT T GTAA A GCTCAAATCCTCGGTATCCCAACACAAGGGGTAGAAAAAAGCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATGAGTTGCTAGTCTGCAAAATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCCCTTAAGATT ]
[-] EMBL AU184100 [ tttttttttTGCTAAGGCAAAAGGTGCATAATCCAATGTTTGTCCAATGTAACAACTCAAAACTT GA CACAA ATAGTTCCTCTC GTACAAGTTT TGTTCT GTTTGGCATTA GGCCGCCGG ATTCTTAT T GTAA A GCTCAAATCCTCGGTATCCCAACACAAGGGGTAGAAAAAAGCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATGAGTTGCTAGTCTGCAAAATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCCCTTAAGATT ]
[-] EMBL CB682991 [ GCTAAGGCAAAAGGTGCATAATCCAATGTTTGTCCAATGTAACAACTCAAAACTT GA CACAA ATAGTTCCTCTC GTACAAGTTT TGTTCT GTTTGGCATTA GGCCGCCGG ATTCTTAT T GTAA A GCTCAAATCCTCGGTATCCCAACACAAGGGGTAGAAAAAAGCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATGAGTTGCTAGTCTGCAAAATGGCCTAAaagggcat ]
[-] EMBL CB684144 [ GCTAAGGCAAAAGGTGCATAATCCAATGTTTGTCCAATGTAACAACTCAAAACTT GA CACAA ATAGTTCCTCTC GTACAAGTTT TGTTCT GTTTGGCATTA GGCCGCCGG ATTCTTAT T GTAA A GCTCAAATCCTCGGTATCCCAACACAAGGGGTAGAAAAAAGCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATGAGTTGCTAGTCTGCAAAATGGCCTAGGGACGCAT ]
[-] EMBL BM421055 [ tttttttTAATCCAATGTTTGTCCAATGTAACAACTCAAAACTTGGA CACAA ATAGTTCCTCTC GTACAAG TT TGTTCT G TTGGCATTA GGCCGCCGG ATTCTTA T GTAA A GCTCAAATCCTCGGTATCCCAACACAAGGGGTAGAAAAAAGCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATGAG TGCTAGTCTGCAAAATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCCCTTAAGATT ]
[-] EMBL AU165484 [ ttttTAATCCAATGTTTGTCCAATGTAACAACTCAAAACTT GA CACAA ATAGTTCCTCTC GTACAAGTTT TGTTCT GTTTGGCATTA GGCCGCCGG ATTCTTAT T GTAA A GCTCAAATCCTCGGTATCCCAACACAAGGGGTAGAAAAAAGCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATGAGTTGCTAGTCTGCAAAATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCG CCTTAAGATTCTCCAGTTCCTTACNCTTCTCAAAAGTCTGGACAGCTGGGCCCAACCCNAAGAACTTCCTCAACT]
[-] EMBL AU097164 [ ttttTAATCCAATGTTTGTCCAATGTAACAACTCAAAACTT GA CACAA ATAGTTCCTCTC GTACAAGTTT TGTTCT GTTTGGCATTA GGCCGCCGG ATTCTTAT T GTAA A GCTCAAATCCTCGGTATCCCAACACAAGGGGTAGAAAAAAGCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATGAGTTGCTAGTCTGCAAAATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCCCTTAAGATT ]
[+] EMBL CB681165 [ ttaaaggCCAATGGAAAAATTTAAAATTT GA AACAA ATAGTTCCTCTC GTACAAGTTT TGTTCT GTTTGCCATTA GGCCGCCGG ATTCTTAT T GGAA A GCTCAAATCCTCGGGATCCCAACACAAGGGGGAAAAAAAAGCATAAATCAAATCAAGAAAAGCCTCATCTACAGGGATGAGTTGCTAGTCTGCAAAATGGCCTAACTACCCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCCCCCTTAAAAT ]
[-] EMBL OSR08861A [ ACACAANGGGTAGAAAAAAGCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATGAGTTGCTAGTCTGCAAAATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCCCTTAAGATT ]
consensusID : consensus_14940#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 274 fasta sequence
[TTTCACGAGGTTTTTGTTTGTCCAATGTAACAACTCAAAACTTGACACAAATAGTTCCTCTCGTACAAGTTTTGTTCTGTTTGGCATTAGGCCGCCGGATTCTTATTGTAAAGCTCAAATCCTCGGTATCCCAACACAAGGGTT---TATATTCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATTTGTTGTTAGTCTGCAAAATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCCCTTAAGATT]
[+] EMBL CF306168 [ CACGAGGTTTTTGTTTGTCCAATGTAACAACTCAAAACTTGACACAAATAGTTCCTCTCGTACAAGTTTTGTTCTGTTTGGCATTAGGCCGCCGGATTCTTATTGTAAAGCTCAAATCCTCGGTATCCCAACACAAGGGTT TATATTCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATTTGTTGTTAGTCTGCAAAATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCCCTTAAGAT ]
[-] EMBL AU030431 [ttttttttttTTTTTTTTTGTCCAATGTAACAACTCAAAACTTGACACAAATAGTTCCTCTCGTACAAGTTTTGTTCTGTTTGGCATTAGGCCGCCGGATTCTTATTGTAAAGCTCAAATCCTCGGTATCCCAACACAAGGGGTAGAAAAAAGCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATGAGTTGCTAGTCTGCAAAATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCCCTTAAGATt]
consensusID : consensus_14940#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence
[TTTTTTTTTTGGCCAATGTAACAACCTCTAACTTGACACAAATAATTCCTCTTGTACAACTTTTGTTTTGTTTGGCATGTAGGCCGACCGATTATTATTGTAAAGCTCAAATCCTCGGTATCCCAACACAAGGGGTACAAAAAGAGCATAAATCGAATCCACATAAGCCTCATCTACCGGTATGAGTTGCTAGTCTGCAAAATGGCCTAACTACACATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCCCTTAATAT]
[+] EMBL CF314853 [TTTTTTTTTTGGCCAATGTAACAACCTCTAACTTGACACAAATAATTCCTCTTGTACAACTTTTGTTTTGTTTGGCATGTAGGCCGACCGATTATTATTGTAAAGCTCAAATCCTCGGTATCCCAACACAAGGGGTACAAAAAGAGCATAAATCGAATCCACATAAGCCTCATCTACCGGTATGAGTTGCTAGTCTGCAAAATGGCCTAACTACACATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCCCTTAATAT]
consensusID : consensus_14940#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence
[TTTTTTTTTTTTTTTAATCCAATGTTTGNCCAATGTAACAACTCAAAACTTGACACAAATAGTTNTNCNCGTACAAGTTTTGTNCTGTTTGGCATTAGGCCGCCGGATTCTTATTGTAAAGNNCAAATNNNCGGTATNNNAACACAAGGGGTAGAAAAAAGCATAAATCAAANCAAGAGAAGNNNCATCTACAGGTATGAGTTNNTAGTCTGCAAAATGGCCTAACTACGNATTNGCAA]
[-] EMBL AU068406 [TTTTTTTTTTTTTTTAATCCAATGTTTGNCCAATGTAACAACTCAAAACTTGACACAAATAGTTNTNCNCGTACAAGTTTTGTNCTGTTTGGCATTAGGCCGCCGGATTCTTATTGTAAAGNNCAAATNNNCGGTATNNNAACACAAGGGGTAGAAAAAAGCATAAATCAAANCAAGAGAAGNNNCATCTACAGGTATGAGTTNNTAGTCTGCAAAATGGCCTAACTACGNATTNGCAA]
consensusID : consensus_14940#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 151 fasta sequence
[AACAGAACAAAACTTGTACGAGAGGAACTATTTGTGTCAAGTTTTGAGTTGTTACATTGGACAAACATTGGATTATGCACCTTTTGCCTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BE229931 [AACAGAACAAAACTTGTACGAGAGGAACTATTTGTGTCAAGTTTTGAGTTGTTACATTGGACAAACATTGGATTATGCACCTTTTGCCTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14940#0 CAATGAGTAGTTTGTATTTCCAGAAATTATACTTTTAAAACTGGCTAAAGCAGAACATTA 60
consensus_14940#2 ------------------------------------------------------------
consensus_14940#1 ------------------------------------------------------------
consensus_14940#3 ------------------------------------------------------------
consensus_14940#4 ------------------------------------------------------------
consensus_14940#0 GGCCAGTGTCAACAAATGCTAAGGCAAAAGGTGCATAATCCAATGTTTGTCCAATGTAAC 120
consensus_14940#2 --------------------------------------TTTTTTTTTTGGCCAATGTAAC 22
consensus_14940#1 -----------------------------TTTCACGAGGTTTTTGTTTGTCCAATGTAAC 31
consensus_14940#3 ---------------------TTTTTTTTTTTTTTTAATCCAATGTTTGNCCAATGTAAC 39
consensus_14940#4 ---------------------------------------------------------AAC 3
***
consensus_14940#0 AACTCAAAACTTG-ACACAAATAGTTCCTCTCGTACAAGTTTTGTTCTGTTTGGCAT-TA 178
consensus_14940#2 AACCTCTAACTTG-ACACAAATAATTCCTCTTGTACAACTTTTGTTTTGTTTGGCATGTA 81
consensus_14940#1 AACTCAAAACTTG-ACACAAATAGTTCCTCTCGTACAAGTTTTGTTCTGTTTGGCAT-TA 89
consensus_14940#3 AACTCAAAACTTG-ACACAAATAGTTNTNCNCGTACAAGTTTTGTNCTGTTTGGCAT-TA 97
consensus_14940#4 AGAACAAAACTTGTACGAGAGGAACTATTTGTGT-CAAGTTTTGAGTTGTT--ACAT-TG 59
* ****** ** * * * ** *** ***** **** *** *
consensus_14940#0 GGCCGCCGGATTCTTATTGTAAAGCTCAAATCCTCGGTATCCCAACACAAGGGGTAGAAA 238
consensus_14940#2 GGCCGACCGATTATTATTGTAAAGCTCAAATCCTCGGTATCCCAACACAAGGGGTACAAA 141
consensus_14940#1 GGCCGCCGGATTCTTATTGTAAAGCTCAAATCCTCGGTATCCCAACACAAGGGTTTATAT 149
consensus_14940#3 GGCCGCCGGATTCTTATTGTAAAGNNCAAATNNNCGGTATNNNAACACAAGGGGTAGAAA 157
consensus_14940#4 GACAAAC--ATTGG-ATTATGCACCTTTTGCCTTAGCAAAAAAAAAAAAAAAAAAAAAAA 116
* * * *** *** * * * * ** * ** *
consensus_14940#0 AA-AGCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATGAGTTGCTAGTCTGCAAA 297
consensus_14940#2 AAGAGCATAAATCGAATCCACATAAGCCTCATCTACCGGTATGAGTTGCTAGTCTGCAAA 201
consensus_14940#1 ----TCATAAATCAAATCAAGAGAAGCCTCATCTACAGGTATTTGTTGTTAGTCTGCAAA 205
consensus_14940#3 AA-AGCATAAATCAAANCAAGAGAAGNNNCATCTACAGGTATGAGTTNNTAGTCTGCAAA 216
consensus_14940#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 151
* *** ** * * ** * *
consensus_14940#0 ATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCC 357
consensus_14940#2 ATGGCCTAACTACACATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCC 261
consensus_14940#1 ATGGCCTAACTACGCATTTGCAAATTTGATACCCTTCTCAATTGAAGCCTTGAGCTCGCC 265
consensus_14940#3 ATGGCCTAACTACGNATTNGCAA------------------------------------- 239
consensus_14940#4 ------------------------------------------------------------
consensus_14940#0 CTTAAGATTCTCCAGTTCCTTACNCTTCTCAAAAGTCTGGACAGCTGGGCCCAACCCNAA 417
consensus_14940#2 CTTAATAT---------------------------------------------------- 269
consensus_14940#1 CTTAAGATT--------------------------------------------------- 274
consensus_14940#3 ------------------------------------------------------------
consensus_14940#4 ------------------------------------------------------------
consensus_14940#0 GAACTTCCTCAACT 431
consensus_14940#2 --------------
consensus_14940#1 --------------
consensus_14940#3 --------------
consensus_14940#4 --------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||