These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1365 fasta sequence [AAATGCGACATGGTTCATGCTTGCTCGATTGATTGATTGCAATAGACAAAAACTCTTCTTGTCTCTTCACCTCGCCACCGGGGCCGCCATACAATTACCTCCATAAATCTTGGATAGAATGTTAGGAGTAACTAACTCTGCACTGTGCCATTGCTGTGTGTCAGTGTGTGTATATATATCCAGCTGCCAGCTGCAGAGTGAAGCATAAACATCAGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGATGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGATTACTGCGACAGCTGGCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGACGCCGCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCAAGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTCGACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTATAATTGGTTTTACCGTGAATTAATTAGGCTTGCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAGG] [+] EMBL AK100363 [AAATGCGACATGGTTCATGCTTGCTCGATTGATTGATTGCAATAGACAAAAACTCTTCTTGTCTCTTCACCTCGCCACCGGGGCCGCCATACAATTACCTCCATAAATCTTGGATAGAATGTTAGGAGTAACTAACTCTGCACTGTGCCATTGCTGTGTGTCAGTGTGTGTATATATATCCAGCTGCCAGCTGCAGAGTGAAGCATAAACATCAGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGATGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGATTACTGCGACAGCTGGCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGACGCCGCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCAAGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTCGACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGG ] [+] EMBL AK060964 [ AGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGATGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTGGCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCCGCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCAAGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTCGACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCC TCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTATAATTGGTTTT ] [-] EMBL CB666230 [ CGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTCGACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTGGGGTTTATCTTTTATAATTGGTTTTACCGTGAAT ] [-] EMBL CB682383 [ CGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGTTGAGGAACGCCACCGCCACCAATTTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTCGACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTATTACATGGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACACCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTATAATTGGTTTTACCGTGAATTAATTAGGCTTGCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAGG] consensusID : consensus_14947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1150 fasta sequence [ATTCCTCGAGCACTGTTGGCCTACTGGATAAACATCAGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA-TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG-GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC-GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA-AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG-AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAG-AACTCGACGGCGACGGGATCGGTGGTGGAGT-ACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTAC-GTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTAAAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK109404 [ATTCCTCGAGCACTGTTGGCCTACTGGATAAACATCAGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAG AACTCGACGGCGACGGGATCGGTGGTGGAGT ACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTAC GTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTAAAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK104183 [ AGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAG AACTCGACGGCGACGGGATCGGTGGTGGAGT ACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTAC GTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGG ] [+] EMBL AK061466 [ AGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAG AACTCGACGGCGACGGGATCGGTGGTGGAGT ACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTAC GTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGG ] [+] EMBL AK104471 [ GTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAG AACTCGACGGCGACGGGATCGGTGGTGGAGT ACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTAC GTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGG ] [+] EMBL OSR24731A [ CGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTA NCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCNACGGCGACTACTGCNACA NTGTGCGCGTCGGCGTAGAGGCGAA ] [+] EMBL OSS15091A [ TGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGG CGCCGCGCTAG CACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAG TG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGNCGGCG C GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCG ] [+] EMBL CB682382 [ GCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCTGATCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAATGCTTCGACTGCTGGGACGAGCTCATAT ] [+] EMBL OSS13158A [ GCGACTTGTCTGCTTCTTGGCCGTGG CGCCGCGCTAG CACCACCTGCCACGGGTGGGGCGCCGGCGNCGGCGATTGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACA NTG GCGCGTCGNCGTGGAGGCGAACAACGTGCGNGGGTGGACGNCGGCGCCNGC AAAGTNGGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGNCGCGACA NA AGGTCGTCGTCGACGAGGC ] [+] EMBL AU057525 [ GACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTA CCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCGAAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAAAGCCACCGCCACCAATCTCATCAAGGAAAGGTTCGACTGCTGGGACGAACTCATATTAAGGTCGGAGAAATTCGANGGNGACGGGAT NGTGGTTGAGTAAAAAGTCGGGGGAGAGGAAGA ] [+] EMBL CB666229 [ CTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCTACTGCTGGGACGAGCTCATATTAAGGTCGGAG AACTCGACGGCGACGGGATCGGTGGTGGAGT ACAAGTCGGGGGAGA ] [+] EMBL CF325304 [ GCGACGGCGACTACTGCGACAGCTG GCGCGTC GCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACA CANAGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAG AACTCGACGGCGACGGGATCGGTGGTGGAGT ] [+] EMBL AU173378 [ ACGAGCTCATATTAAGGTCGGAG AACTCGNCGGCGACGGGATCGGTGGTGGAGT ACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTACGGTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTAAAAA ] [+] EMBL AU057526 [ GCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTAC GTACCTGNCCTGCTGTGCACTGTTGTATCTTTTTGGTGAGNCGATTGAAATNTNTTTGGGTTTATCTTTTATTNAAAAAnnna ] consensusID : consensus_14947#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [ATCAACAACAGCAGACCAGCAAACGAGTCTAACGATGCCCACAGCAACAGCCCGCCCGAGGATTCCCAAACAAGGTGTGTAGAGCCACAGAGACACCGAACACGGCCACGAGCTACGGTCGGCGGGGGCAGACGGAGCAACAAGGAGAGCGGGAACAGGCGCGCGCAAGGCAACAAAACTCGAAAAATACGGAGAGGGGACCATACGGCCGCGGACGCGAGGTGATGGTGGAGGGGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCCACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCCTACAAGAAGCACGGCTTCGGGTACCACAGCAACCGCACGAGCCGGCGTTCCATGGAGTGGCGGAGTCGCCGGCCAGAGCGTCGGCGTTGCCGCCACACGGTGACGCTGGTACAAGAAGCTGCTC] [-] EMBL CA753298 [ATCAACAACAGCAGACCAGCAAACGAGTCTAACGATGCCCACAGCAACAGCCCGCCCGAGGATTCCCAAACAAGGTGTGTAGAGCCACAGAGACACCGAACACGGCCACGAGCTACGGTCGGCGGGGGCAGACGGAGCAACAAGGAGAGCGGGAACAGGCGCGCGCAAGGCAACAAAACTCGAAAAATACGGAGAGGGGACCATACGGCCGCGGACGCGAGGTGATGGTGGAGGGGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCCACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCCTACAAGAAGCACGGCTTCGGGTACCACAGCAACCGCACGAGCCGGCGTTCCATGGAGTGGCGGAGTCGCCGGCCAGAGCGTCGGCGTTGCCGCCACACGGTGACGCTGGTACAAGAAGCTGCTC] consensusID : consensus_14947#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [GATTGCNCCAAGCGACTTNGTCTGCTTCTTGGCCGTNGCGCCGCGCTANCACCACCTNCCACNGGTTGGGCGCCGGCCGGCANTGNTCGTGTCGTCGTCGGCGGCGGCTCNTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCNGCCGTGGNGACGCGACTACTGCGACANTGGCGCGTCGGNTGGAGGCGAACAACGTGCGGGGGTNGACGGCGGCGCTGCAAGTNCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACACAAAGGTTGTCGTC] [+] EMBL OSS14381A [GATTGCNCCAAGCGACTTNGTCTGCTTCTTGGCCGTNGCGCCGCGCTANCACCACCTNCCACNGGTTGGGCGCCGGCCGGCANTGNTCGTGTCGTCGTCGGCGGCGGCTCNTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCNGCCGTGGNGACGCGACTACTGCGACANTGGCGCGTCGGNTGGAGGCGAACAACGTGCGGGGGTNGACGGCGGCGCTGCAAGTNCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACACAAAGGTTGTCGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14947#1 ------------------------------------------------------------ consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 AAATGCGACATGGTTCATGCTTGCTCGATTGATTGATTGCAATAGACAAAAACTCTTCTT 60 consensus_14947#2 ------------------------------------------------------------ consensus_14947#1 ------------------------------------------------------------ consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 GTCTCTTCACCTCGCCACCGGGGCCGCCATACAATTACCTCCATAAATCTTGGATAGAAT 120 consensus_14947#2 ------------------------------------------------------------ consensus_14947#1 ---------------------------------------------------------ATT 3 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 GTTAGGAGTAACTAACTCTGCACTGTGCCATTGCTGTGTGTCAGTGTGTGTATATATATC 180 consensus_14947#2 ------------------------------------------------------------ consensus_14947#1 CCTCGAGCACTGTTGGCCTACTGGATAAACATCAGTAGACGACGGCGATGGCGCCCAAGC 63 consensus_14947#3 ----------------------------------------------GATTGCNCC-AAGC 13 consensus_14947#0 CAGCTGCCAGCTGCAGAGTGAAGCATAAACATCAGTAGACGACGGCGATGGCGCCCAAGC 240 consensus_14947#2 ----------------------------------------ATCAACAACAGCAGACCAGC 20 * ** *** consensus_14947#1 GACTTG-TCTGCT--TCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGG 120 consensus_14947#3 GACTTNGTCTGCT--TCTTGGCCGTNGC-GCCGCGCTANC-ACCACCTNCCACNGGTTGG 69 consensus_14947#0 GACTTG-TCTGCT--TCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGG 297 consensus_14947#2 AAACGAGTCTAACGATGCCCACAGCAACAGCCCGCCCGAGGATTCCCAAACAAGGTGTGT 80 * *** * * * * *** * * ** ** * * consensus_14947#1 GCGCCGGCGCCGGCGATGT-CGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGG 179 consensus_14947#3 GCGCCGGC--CGGCANTGNTCGTGTCGTCGTCGGCGGCGGCTCN-TCGTTCGTGGACAGG 126 consensus_14947#0 GCGCCGGCGCCGGCGATGT-CGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGG 356 consensus_14947#2 AGAGCCACAGAGACACCGAACACG--GCCACGAGCTACGGTCGG--CGGGGGCAGACGGA 136 * * * * * * * * * ** *** ** * *** * consensus_14947#1 CTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTGGCGC 239 consensus_14947#3 CTGAGGCAGATGATGATCCCGGCNGCCGTGGN-GACG-CGACTACTGCGACAN-TGGCGC 183 consensus_14947#0 CTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGATTACTGCGACAGCTGGCGC 416 consensus_14947#2 GCAACAAGGAGAGCGGGAACAGGCGC-GCGCAAGGCAACAAAACTCGAAAAATACGGAGA 195 * ** * * * ** * * * * * * * * * ** * consensus_14947#1 GTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCCGCGCAAGTGCGACAAC 299 consensus_14947#3 GTCGGN-TGGAGGCGAACAACGTGCGGGGGTNGACGGCGGCGCTGC--AAGTNCGACAAC 240 consensus_14947#0 GTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGACGCCGCGCAAGTGCGACAAC 476 consensus_14947#2 GGGGACCATACGGCCGCGGACGCGAGGTGATGGTGGAGGGGGCCGC-CGCCTACGCCGAG 254 * * *** *** * ** * * * * * ** ** * ** * * consensus_14947#1 TACGTCGAGAACTACATGCGCGGCCACCACTACCGCC-GCGACAGCAAGGTCGTCGTCGA 358 consensus_14947#3 TACGTCGAGAACTACATGCGCGGCCACCACTACCGCC-GCGACACAAAGGTTGTCGTC-- 297 consensus_14947#0 TACGTCGAGAACTACATGCGCGGCCACCACTACCGCC-GCGACAGCAAGGTCGTCGTCGA 535 consensus_14947#2 GCCGCCGTCCTCTCCG-GCGACCCCGCCGCCGACGCCCACGCCACCTGGGTGTTCGACGT 313 ** ** ** * *** ** ** * **** ** ** *** *** * consensus_14947#1 CGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAA 418 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 CGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAA 595 consensus_14947#2 CGACGAGACCGCCCTCTCCCACGTCAAGTTCCTACAAGAAGCACGGCTTCGGGTACCACA 373 consensus_14947#1 CGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAA 478 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 CGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAA 655 consensus_14947#2 GCAACCGCACGAGCCGGCGTTCCATGGAGTGGCGGAGTCGCCGGCCAGAGCGTCGGCGTT 433 consensus_14947#1 GCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGG 538 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 GCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGG 715 consensus_14947#2 GCCGCCACACGGTGACGCTGGTACAAGAAGCTGCTC------------------------ 469 consensus_14947#1 CAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGT 598 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 CAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGT 775 consensus_14947#2 ------------------------------------------------------------ consensus_14947#1 CAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCAC 658 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 CAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCAC 835 consensus_14947#2 ------------------------------------------------------------ consensus_14947#1 CAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTC 718 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 CAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTC 895 consensus_14947#2 ------------------------------------------------------------ consensus_14947#1 GACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGA 778 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 GACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGA 955 consensus_14947#2 ------------------------------------------------------------ consensus_14947#1 GAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCC 838 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 GAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCC 1015 consensus_14947#2 ------------------------------------------------------------ consensus_14947#1 GGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCG 898 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 GGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCG 1075 consensus_14947#2 ------------------------------------------------------------ consensus_14947#1 CGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTC 958 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 CGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTC 1135 consensus_14947#2 ------------------------------------------------------------ consensus_14947#1 GTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCA 1018 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 GTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCA 1195 consensus_14947#2 ------------------------------------------------------------ consensus_14947#1 GACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGT 1078 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 GACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGT 1255 consensus_14947#2 ------------------------------------------------------------ consensus_14947#1 ATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTAAAAAAAAAAAAAAAA 1138 consensus_14947#3 ------------------------------------------------------------ consensus_14947#0 ATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTATAATTGGTTTTACCG 1315 consensus_14947#2 ------------------------------------------------------------ consensus_14947#1 AAAAGGCCACAT-------------------------------------- 1150 consensus_14947#3 -------------------------------------------------- consensus_14947#0 TGAATTAATTAGGCTTGCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAGG 1365 consensus_14947#2 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||