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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1208 fasta sequence
[AAGCAAGCAAACAACAACAAAAACCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCGCTCGCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCGTCGCCGCCATCAAGGCCTGCTACGGCCTGGGCTGCGACCTCCGGATCCTCAGCGACGCCAACC-GCTTC-TTCATCGACACCATCCTCGACCACCACGGCCTCACGGGTTAC-TTCTCCGAGA-TCAACACCAACCCGAGCGCCGTCGACGCCGCCACCGGCCGCCTCCGCATCGCGCCGTACCACGACTTCCACGCCGGCCCGCACGGGTGCGGCCTCGGGATCTGCCCGCCCAACATGTGCAAGGG-CCAGGTGCTCGA-CCGCAT-CCGC-GCCTCCGCCGGCGCCGCCGGC-AAGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTACTGCCCG-TC-GCTCCGC-CT-CGGCCGCGACGACTT-CATGATGCCACG-CAGGGGCTTCCCCGTGTGGGAGCT-CATCTGCGAGGACCCGTCGCTGCTCCACGCGGAGGTGCACTCGTGGGCCGACGGCG-CCGAGATGGAGGAG-ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTG-CCGCCGCTCGACTGCAAGCTCGAGTCGTTG-CCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAGAAAA-AAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAAAAAATTGACTAGTCTGAATTTTGGCCTC]
[+] EMBL AK061237 [AAGCAAGCAAACAACAACAAAAACCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCACGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCGCTCGCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCGTCGCCGCCATCAAGGCCTGCTACGGCCTGGGCTGCGACCTCCGGATCCTCAGCGACGCCAACC GCTTC TTCATCGACACCATCCTCGACCACCACGGCCTCACGGGTTAC TTCTCCGAGA TCAACACCAACCCGAGCGCCGTCGACGCCGCCACCGGCCGCCTCCGCATCGCGCCGTACCACGACTTCCACGCCGGCCCGCACGGGTGCGGCCTCGGGATCTGCCCGCCCAACATGTGCAAGGG CCAGGTGCTCGA CCGCAT CCGC GCCTCCGCCGGCGCCGCCGGC AAGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTACTGCCCG TC GCTCCGC CT CGGCCGCGACGACTT CATGATGCCACG CAGGGGCTTCCCCGTGTGGGAGCT CATCTGCGAGGACCCGTCGCTGCTCCACGCGGAGGTGCACTCGTGGGCCGACGGCG CCGAGATGGAGGAG ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTG CCGCCGCTCGACTGCAAGCTCGAGTCGTTG CCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAAC ]
[+] EMBL C73042 [ AACAACAACAAAAACCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCGCTCGCCGACGTCGCGGGCGTGCTCANGTCGGCG CGCTCGACCCGCGCGTCGTCGCCG CATCAAGGCCTGCTACGGCTTGGGCTGCGA CTCCGGATCCTCAGCGACG CAACG GTTTT TTAATTGANA CATCTTGGA CA CACGG CTTACGGGTAAT TTTTCCGA A TTAA AACAACCCng ]
[+] EMBL AA754477 [ cgtcganAACAACAAAAA CACTTCCCGTGGGTANAAGAGAGANAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGCGCGGCAAGTCGCTCTCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCGTCGCCGCCATCAAGGCCTNCTNCGGCCTCGGCTGCGACCTCCGGATCCTCAGCGACGCCAACC GCTTC TTCATCGACACCATCCTCGACCACCACGGCCTCACGGGTTAC TTCTCCGAGA TCAACACCAACCCGAGCGCCGTCGACGCCGCCACCGGCCGCCTCCGCATCGCGCCGTACCACGACTTCCACGCCGGCCCGCACGGGTGCGGGCTCCGGATCTGCCCGCCCAACATGTGCAAGGG CCAGGTGCTCGA CCGCAT CCGC GCCTCCGCCGGCGCCGCCGGG AAGAAGG ]
[+] EMBL AU056963 [ ACAACAAAAACCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCGCTCGCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCGTCGCCGCCATCAAGGCCTGCTACGGCCTGGGCTGCGACCTCCGGATCCTCAGCGACGCCAACN GCTTCTTTCATCGACACCATCCTCGACCACCACGGCCTCACGGGTTAC TTCTCCGAGATTCAACACCAACCCGAGCGCCGTCGACGCCGCCACCGGCCGCCTCCGCATNGCGCCGTACCACGACTTCCACGCCGGCCCGCACGGGTGCGGCCTCGGGATCTGCCCGCCCAACATGTGCAAGGG CCAGGTGCTCGA CCGCAT CCGCGGCTTCCGCCGGNGCCGCCGGCAAAGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTAATGCCCG TCGGTTCCGCNTT CGG CGCGACGACTT CATGATGCAACG CAGGGGGTTNCCCGTGTGGGAACT CA ]
[+] EMBL C74865 [ ACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCGCTCGCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCGTCGCCGCCATCAAGGCCTGCTACGGCCTGGGCTGCGACTNCCGGATCCTCAGCGANGCCAACCGGTTTT TTAATCG ]
[+] EMBL CB619297 [ CTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGCGCGGCAAGTCGCTCTCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCGTCGCCGCCATCAAGGCCTGCTACGGCCTCGGCTGCGACCTCCGGATCCTCAGCGACGCCAACC GCTTC TTCATCGACACCATCCTCGACCACCACGGCCTCACGGGTTAC TTCTCCGAGA TCAACACCAACCCGAGCGCCGTCGACGCCGCCACCGGCCGCCTCCGCATCGCGCCGTACCACGACTTCCACGCCGGCCCGCACGGGTGCGGCCTCGGGATCTGCCCGCCCAACATGTGCAAGGG CCAGGTGCTCGA CCGCAT CCGC GCCTCCGCCGGCGCCGCCGGC AAGAGGGTCATCTACCTCGGCGACGGCCGCGGCGACTACTGCCCG TC GCTCCGC CT CGGCCGCGACGACTT CATGATGCCACG CAGGGGCTTCCCCGTGTGGGAGCT CATCTGCGAGGACCCGTCGCTGCTCCAAGCGGAGGTGCACCCGTGG ]
[-] EMBL CB967037 [ CCTCG CCACCACGGCCTCACGG TACTTTCTCCGAGA TCAACACCAACCCGGGCGCTGTCGACGCCGCCACCGCCCGCCTCCGCATCGCGCCGTACCACGACTTCCACGCCGGCCCGCACGGGTGCGGCCTCGGGATCTGCCCGCCCAACATGTGCAAGGG CCAGGTGCTCGA CCGCAT CCGC GCCTCCGCCGGCGCCGCCGGC AAGAGGGTCATCTACCTCGGCGACGGCCGCGGCGACTACTGCCCG TC GCTCCGC CT CGGCCGCGACGACTT CATGATGCCACG CAGGGGCTTCCCCGTGTGGGAGCT CATCTGCGAGGACCCGTCGCTGCTCCAAGCGGAGGTGCACCCGTGGGCCGACGGCG CCGAGATGGAGGAG ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTG CCGCCGCTCGACTGCAAGCTCGAGTCGTTG CCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGACCCTGCGATTAGTAGAGTCTCATTGTATCTCCTCCGATCAAGTGAAGTACAACATTTGG ]
[-] EMBL CB619298 [ GCACGGGTGCGGCCTCGGGATCTGCCCGCCCAACATGTGCAAGGG CCAGGTGCTCGA CCGCAT CCGC GCCTCCGCCGGCGCCGCCGGC AAGAGGGTCATCTACCTCGGCGACGGCCGCGGCGACTACTGCCCG TC GCTCCGC CT CGGCCGCGACGACTT CATGATGCCACG CAGGGGCTTCCCCGTGTGGGAGCT CATCTGCGAGGACCCGTCGCTGCTCCAAGCGGAGGTGCACCCGTGGGCCGACGGCG CCGAGATGGAGGAG ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTG CCGCCGCTCGACTGCAAGCTCGAGTCGTTG CCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAGAAAAGAAAGTAAAACATTCAGAAAAAAAGTAAAAaaaaaga ]
[+] EMBL AU056964 [ tcCCCGCCCAACATTTGCAAGGGCCCAGNTGCTCGACCCGCATCCCGC GCTTCCCGCGGCGCCGCCGGC AAGAGGGTCATCTACNTCGGTGACGGCCGCGGCGACTACTGCCCGTTC GCTCCGC CT CGGCCGCGACGACTT CATGATNCCACG CAGGGGCTTCCCCGTGTGGGAGCTCCATCTGCGAGGACCCGTCGCTGCTCCACGCGGAGGTGCACTCGTGGNCCGACGGCGCCCGAGATGGAGGAGAACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTGCCCGCCGCTCGACTGCAAGCTCGAGTCGTTGCCCGGCCGTCGCCGTGCAGGACGGCATGCCTATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGA TTTTNTGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCaaaaaaaaa ]
[+] EMBL AU094124 [ CCG TC G TCCGC TTCCGGCTGCGACGACTTNCATGATGCCACGTCAGGGGCTTCCCCGTGTGGGAGCT CATCTGCGAGGACCCGTCGCTGCTCNACGCGGAGGTGCAATCGTGGGCCGACGGCG CCGAGATGGAGGAG ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGANCCTG CCGCCGCTCGACTGNAAGCTCGAGTCGTTG CCGGCCGTCGCCGTGCAGGACNGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGA TTTTNTGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTaaaaaa ]
[+] EMBL AU225649 [ GCCGCTACGACTT CATGATGCCACG CAGGGGCTTCCCCGTGTGGGAGCT CATCTGCGAGGACCCGTCGCTGCTCCACGCGGAGGTGCACTCGTGGGCCGACGGCG CCGAGATGGAGGAG ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTG CCGCCGCTCGACTGCAAGCTCGAGTCGTTG CCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATCGACTGATATTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAA ATTTGGCTGGGCTCTCTCTCTATGAGATGTAAT ]
[+] EMBL AU173344 [ CGGCG CCGAGATGGAGGAG ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTG CCGCCGCTCGACTGCAAGCTCGAGTCGTTG CCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAGAAAA AAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAAAAAA ]
[+] EMBL BU673235 [ gCGGCA GGTGCTCCTCGAGGAGAGGAACC G CCGCCGCTCGACTGCAAGCTCGAGTCG TG CCGGCCGTCGCCG GCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAA GGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAAAAAA AAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAGTGAATTGACTAGTCTGAATTTTGGCCTC]
consensusID : consensus_14948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence
[CANAAGCAGGNAGGNNGGGNGGACTTCGGATCTTAGGAAGCANCGTTTTTTNTTGANACATCTTNGACACCAGGCTCAGGGTAATTTTTCNGAGATAAAACAAACCCGAGGCGTTGAAGCCGCCACCGGCCGCTTCCGCATCGCGCNGTACCACGAATTTCCAACGCCGGCCCGCACGGGTGCGGCNTCGGGATCTGCCCGCCCAACATGTGCAAGGGCCAGGTGCTCGACCGCATCCGCGCCTCCGCCGGCGCCGCCGGCAAGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTACTGCCCGTCGCTCCGCCTCGGCCGCGACGACTTCATGATGCCACGCAGGGGCTTCCCCGTGTGGGAGCTCATCTGCGAGGACCCGTCGCTGCTCCACGCGGAGGTGCACTCGTGGGCCGACGGCGCCGAGATGGAGGAGACGCTGCTGCGGCTGGTCGG]
[+] EMBL AA753900 [CANAAGCAGGNAGGNNGGGNGGACTTCGGATCTTAGGAAGCANCGTTTTTTNTTGANACATCTTNGACACCAGGCTCAGGGTAATTTTTCNGAGATAAAACAAACCCGAGGCGTTGAAGCCGCCACCGGCCGCTTCCGCATCGCGCNGTACCACGAATTTCCAACGCCGGCCCGCACGGGTGCGGCNTCGGGATCTGCCCGCCCAACATGTGCAAGGGCCAGGTGCTCGACCGCATCCGCGCCTCCGCCGGCGCCGCCGGCAAGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTACTGCCCGTCGCTCCGCCTCGGCCGCGACGACTTCATGATGCCACGCAGGGGCTTCCCCGTGTGGGAGCTCATCTGCGAGGACCCGTCGCTGCTCCACGCGGAGGTGCACTCGTGGGCCGACGGCGCCGAGATGGAGGAGACGCTGCTGCGGCTGGTCGG]
consensusID : consensus_14948#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 433 fasta sequence
[CCTCATAAGGGAATAGCTG-GGCCGGCGGCA-GGTGCTCCTCGAGGAGAGGAACCTGCCGCCGCTCGACTGCAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAAAAAAAAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAGTGAATTGACTAGTC]
[+] EMBL BU673395 [CCTCATAAGGGAATAGCTG GGCCGGCGGCA GGTGCTCCTCGAGGAGAGGAACCTGCCGCCGCTCGACTGCAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAAAAAAAAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAGTGAATTGACTAGTC]
[+] EMBL CB964815 [ GGGAATACTTGCGGCGGCCGGCAGGGTGCTCCTCGAGGAGAGGAA CTGCCGCCGCTCGACTGCAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAAAAAAAAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAGTGAATTGACTAGTC]
consensusID : consensus_14948#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence
[GGTGCTCCTCGAGGAGAGGAACCTGCCGCCGCTCGACTGCAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGCATAAGAACTGATCAATGGCGGCGACGCACGTACGCATGATTTCGCAGCGCGAAACGGCTAGCTCGCAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTCACGCGTGCATTGCAGCCTGCGCATTCAGTCAGCAGGCTCATTGTCATCTTGTCCGGCATCAATTGCAAGTCAAAACATTTGGCTTGGCTCTCTCTCATCATGCAGCATGTAATCCCATTTCTCATACATCTTAAACACAAAAACACACAGTCACACAACCATCAGCACAAAAAAGTCAAAACCA]
[+] EMBL CB965425 [GGTGCTCCTCGAGGAGAGGAACCTGCCGCCGCTCGACTGCAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGCATAAGAACTGATCAATGGCGGCGACGCACGTACGCATGATTTCGCAGCGCGAAACGGCTAGCTCGCAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTCACGCGTGCATTGCAGCCTGCGCATTCAGTCAGCAGGCTCATTGTCATCTTGTCCGGCATCAATTGCAAGTCAAAACATTTGGCTTGGCTCTCTCTCATCATGCAGCATGTAATCCCATTTCTCATACATCTTAAACACAAAAACACACAGTCACACAACCATCAGCACAAAAAAGTCAAAACCA]
consensusID : consensus_14948#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[CCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTNGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCNACGCGAGCGGCAAGTCGCTCGTNGACGTCNGCGGGCCGTGCTCAGGNTCCGNCGNCNGNTCGANCCGNGATTTNGTCGCCGCCATCAAGGNCTGCTACGGCCTTGGGCTGCGACCTCCGGGATCCCTCAGCGACGCCAACCCGNTTNTTTCATTCG]
[+] EMBL OSR23062A [CCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTNGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCNACGCGAGCGGCAAGTCGCTCGTNGACGTCNGCGGGCCGTGCTCAGGNTCCGNCGNCNGNTCGANCCGNGATTTNGTCGCCGCCATCAAGGNCTGCTACGGCCTTGGGCTGCGACCTCCGGGATCCCTCAGCGACGCCAACCCGNTTNTTTCATTCG]
consensusID : consensus_14948#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence
[AACAAAAACCACTTCTCGTGGGTACAACACACACACACCCACGCCATTTCCACCAACAACATGGCCGGGATCGTGGTGGTGTTCGACTTCCACAACACCATCATCCACCTCCACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACCGAGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCCTCGCCGACGTCCCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCTCCCCGCCATCAGGGCCTTGCTACGGCCTTGGGCTGCCACTTCCGGATCCTTCAGCGGCCCANCCG]
[+] EMBL AA754093 [AACAAAAACCACTTCTCGTGGGTACAACACACACACACCCACGCCATTTCCACCAACAACATGGCCGGGATCGTGGTGGTGTTCGACTTCCACAACACCATCATCCACCTCCACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACCGAGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCCTCGCCGACGTCCCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCTCCCCGCCATCAGGGCCTTGCTACGGCCTTGGGCTGCCACTTCCGGATCCTTCAGCGGCCCANCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14948#4 ------------------------------------------------------------
consensus_14948#5 ------------------------------------------------------------
consensus_14948#1 ------------------------------------------------------------
consensus_14948#0 AAGCAAGCAAACAACAACAAAAACCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCG 60
consensus_14948#2 ------------------------------------------------------------
consensus_14948#3 ------------------------------------------------------------
consensus_14948#4 ------------------------------------------------------------
consensus_14948#5 ------------------------------------------------------------
consensus_14948#1 ------------------------------------------------------------
consensus_14948#0 ATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATC 120
consensus_14948#2 ------------------------------------------------------------
consensus_14948#3 ------------------------------------------------------------
consensus_14948#4 ------------------------------------------------------------
consensus_14948#5 ------------------------------------------------------------
consensus_14948#1 ------------------------------------------------------------
consensus_14948#0 GACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGG 180
consensus_14948#2 ------------------------------------------------------------
consensus_14948#3 ------------------------------------------------------------
consensus_14948#4 ------------------------------------------------------------
consensus_14948#5 ------------------------------------------------------------
consensus_14948#1 ------------------------------------------------------------
consensus_14948#0 CTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCG 240
consensus_14948#2 ------------------------------------------------------------
consensus_14948#3 ------------------------------------------------------------
consensus_14948#4 ------------------------------------------------------------
consensus_14948#5 ------------------------------------------------------------
consensus_14948#1 ------------------------------------------------------------
consensus_14948#0 AGCGGCAAGTCGCTCGCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGC 300
consensus_14948#2 ------------------------------------------------------------
consensus_14948#3 ------------------------------------------------------------
consensus_14948#4 ------------------------------------------------------------
consensus_14948#5 -----------------------------------------------------AACAAAA 7
consensus_14948#1 -------------------CANAAGCAGGNAGGNNGGGNGGACTTCGGATCTTAGGAAGC 41
consensus_14948#0 GTCGTCGCCGCCATCAAGGCCTGCTACGGCCTGGGCTGCGACCTCCGGATCCTCAGCGAC 360
consensus_14948#2 ------------------------------------------------CCTCATAAGGGA 12
consensus_14948#3 ------------------------------------------------------------
consensus_14948#4 -CCA-----CTTCTCGTGGGTAG-AAGAGAGAGA------GAGCGA-GGCGATTTCGACC 46
consensus_14948#5 ACCA-----CTTCTCGTGGGTAC-AACACACACA------CACCCA-CGCCATTTCCACC 54
consensus_14948#1 ANCG-----TTTTTTNTTGANAC-ATCTTNGACACC---AGGCTCA-GGGTAATTTTTCN 91
consensus_14948#0 GCCAACCGCTTCTTCATCGACACCATCCTCGACCACCACGGCCTCACGGGTTACTTCTCC 420
consensus_14948#2 ATAGCTGGGCCGGCGGCAGGTGCTCCTCGAGGAGAG---GAACCTGCCGCCGCTCGACTG 69
consensus_14948#3 ------------------GGTGCTCCTCGAGGAGAG---GAACCTGCCGCCGCTCGACTG 39
* *
consensus_14948#4 AAGAAGATGGCCGGGATC-GTGGT-GGTGT--TCGACTTCGACAAGACGATCATCGACGT 102
consensus_14948#5 AACAACATGGCCGGGATC-GTGGT-GGTGT--TCGACTTCCACAACACCATCATCCACCT 110
consensus_14948#1 GAGATAA--AACAAACCC-GAGGC-GTTGAAGCCGCCACCGGCCGCTTCCGCATCGCGCN 147
consensus_14948#0 GAGATCAACACCAACCCGAGCGCC-GTCGACGCCGCCACCGGCCGCCTCCGCATCGCGCC 479
consensus_14948#2 CAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGAT 129
consensus_14948#3 CAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGCA 99
* * * * * * * * **
consensus_14948#4 CGACAGCGACAACTGGGTCGTGGACGGGCTNGGCGCGACGGAGGAGTTCGAG-CGGCTGC 161
consensus_14948#5 CCACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACCGAG-AGTTCGAG-CGGCTGC 168
consensus_14948#1 GTACCACGAATTTCCAACGCCGGCCCGCACGGGTGCGGCNTCGGGATCTGCC-CGCCCAA 206
consensus_14948#0 GTACCACGACTTCC--ACGCCGGCCCGCACGGGTGCGGCCTCGGGATCTGCC-CGCCCAA 536
consensus_14948#2 CAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCG-AGCGCGAAACGGCTAG 188
consensus_14948#3 TAAGAACTGATCAATGGCGGCGACGCACGTACGCATGATTTCGCAGCGCGAAACGGCTAG 159
* * * * * * * ** *
consensus_14948#4 TGCCCACCATGCCGTG---GAACAC--CCTCATGGACACCATGATGGGCGA-GCTCNACG 215
consensus_14948#5 TGCCCACCATGCCGTG---GAACAC--CCTCATGGACACCATGATGGGCGA-GCTCCACG 222
consensus_14948#1 CATGTGCAAGGGCCAG---GTGCTCGACCGCATCCGCGCCTCCGCCGGCGC-CGCCGGCA 262
consensus_14948#0 CATGTGCAAGGGCCAG---GTGCTCGACCGCATCCGCGCCTCCGCCGGCGC-CGCCGGCA 592
consensus_14948#2 CTCG-AACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATT 247
consensus_14948#3 CTCGCAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATT 219
* * * * *
consensus_14948#4 CGAGCGGCAAGTCGCTCGTNGACGTCNGCGGGCCGTGCTCA-GGNTCCGNCGNCNGNTCG 274
consensus_14948#5 CGAGCGGCAAGTC-CTCGCCGACGTCC-CGGGC-GTGCTCA-GGT--CGGCGCCG-CTCG 275
consensus_14948#1 AGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTACT---GCCCGTCGCTCCGCCTCG 319
consensus_14948#0 AGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTACT---GCCCGTCGCTCCGCCTCG 649
consensus_14948#2 TTTGCGCT-ACGCGTG-ATTG-AGCCTGCGA--TTAGTAG--AGGCTCATTGT-ATCTTG 299
consensus_14948#3 TTTGCGCTCACGCGTGCATTGCAGCCTGCGCATTCAGTCAGCAGGCTCATTGTCATCTTG 279
* * * * * ** * *
consensus_14948#4 ANC--CGNGATTTNGTCGCCGCCAT-CAAGGNCT-GCTACGGCCT----TGGGCTGCGAC 326
consensus_14948#5 ACC--CGCG--CGTCTCCCCGCCAT-CAGGGCCTTGCTACGGCCT----TGGGCTGCCAC 326
consensus_14948#1 GCCG-CGACGACTTCATGATGCCACGCAGGGGCT--TCCCCGTGT----GGGAGCTCATC 372
consensus_14948#0 GCCG-CGACGACTTCATGATGCCACGCAGGGGCT--TCCCCGTGT----GGGAGCTCATC 702
consensus_14948#2 TCCG--ATCAATTG-AAGT-AAAACATTTGGCTTGGCTCTCTCTC----TATGAGATGTA 351
consensus_14948#3 TCCGGCATCAATTGCAAGTCAAAACATTTGGCTTGGCTCTCTCTCATCATGCAGCATGTA 339
* * ** *
consensus_14948#4 CTCCGGGATCCCTCAGCGACGCCAACCCGNTTNTTTCATTCG------------------ 368
consensus_14948#5 TTCCGG-ATCCTTCAGCG--GCCCANCCG------------------------------- 352
consensus_14948#1 TGCGAGGACCCGTCGCTG--CTCCACGCGGAGGTGCACTCGTGGGCCGACGGCGCCGAGA 430
consensus_14948#0 TGCGAGGACCCGTCGCTG--CTCCACGCGGAGGTGCACTCGTGGGCCGACGGCGCCGAGA 760
consensus_14948#2 ATCC-ATTTCTATTATCT---TAAAAAAAAAAAAGTAAAACATTCAGAAAAAAAGTAAAA 407
consensus_14948#3 ATCCCATTTCTCATACAT---CTTAAACACAAAAACACA-CAGTCACACAACCATCAGCA 395
* * *
consensus_14948#4 ------------------------------------------------------------
consensus_14948#5 ------------------------------------------------------------
consensus_14948#1 TGGAGGAGACGCTGCTGCGGCTGGTCGG-------------------------------- 458
consensus_14948#0 TGGAGGAGACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTGCCGC 820
consensus_14948#2 CATTCCTGACAGTGAATTGACTAGTC---------------------------------- 433
consensus_14948#3 CAA----AAAAGTCAA--AACCA------------------------------------- 412
consensus_14948#4 ------------------------------------------------------------
consensus_14948#5 ------------------------------------------------------------
consensus_14948#1 ------------------------------------------------------------
consensus_14948#0 CGCTCGACTGCAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGA 880
consensus_14948#2 ------------------------------------------------------------
consensus_14948#3 ------------------------------------------------------------
consensus_14948#4 ------------------------------------------------------------
consensus_14948#5 ------------------------------------------------------------
consensus_14948#1 ------------------------------------------------------------
consensus_14948#0 CGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGA 940
consensus_14948#2 ------------------------------------------------------------
consensus_14948#3 ------------------------------------------------------------
consensus_14948#4 ------------------------------------------------------------
consensus_14948#5 ------------------------------------------------------------
consensus_14948#1 ------------------------------------------------------------
consensus_14948#0 AACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATT 1000
consensus_14948#2 ------------------------------------------------------------
consensus_14948#3 ------------------------------------------------------------
consensus_14948#4 ------------------------------------------------------------
consensus_14948#5 ------------------------------------------------------------
consensus_14948#1 ------------------------------------------------------------
consensus_14948#0 GACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTG 1060
consensus_14948#2 ------------------------------------------------------------
consensus_14948#3 ------------------------------------------------------------
consensus_14948#4 ------------------------------------------------------------
consensus_14948#5 ------------------------------------------------------------
consensus_14948#1 ------------------------------------------------------------
consensus_14948#0 TCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTT 1120
consensus_14948#2 ------------------------------------------------------------
consensus_14948#3 ------------------------------------------------------------
consensus_14948#4 ------------------------------------------------------------
consensus_14948#5 ------------------------------------------------------------
consensus_14948#1 ------------------------------------------------------------
consensus_14948#0 CTATTATCTTAAAAGAAAAAAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAA 1180
consensus_14948#2 ------------------------------------------------------------
consensus_14948#3 ------------------------------------------------------------
consensus_14948#4 ----------------------------
consensus_14948#5 ----------------------------
consensus_14948#1 ----------------------------
consensus_14948#0 AAAATTGACTAGTCTGAATTTTGGCCTC 1208
consensus_14948#2 ----------------------------
consensus_14948#3 ----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||