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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14953#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1855 fasta sequence
[AAGTCAATATAATTTTCGCAATAAAAAAAGAACACTCGCTATTCGGTTGGTCTAGTCGCTCTACAAGTCCACACACGACCCTACTCCTAACCTGTCAAGTCTCCACCACTCTGCAGCAACTCTGCTTGCGAATCCGGGAAAATTTTGCTTGGCAATCGCCGTGATATTCCGTGCGAAACTTCCCAGTAGTACAATCGGCAACTGCAACACGGAGCCACTCGGTCACCGGCAATAAAACCCTCGCCACTTCATCCATCTCTCGCACCGCGCACATCGAATCGCATCGCACACACGGCGGAAGCAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGCGGCGGCGG-TCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAGCCGGTGCCCGCCTACGCCGAGCCGCGCGACGGCCACACGCTGCACGACCTCCCCGGCGAGCCCAACCTCCGCGTGTACCTCCCCGAGGTCGCCCTCGCCGAGCGGCGCCTCCCCGTCGTCGTGCAGCTCCACGGTGGCGGCTTCTGCATCTCCCACCCGTCCTGGCTCATGTACCACCACTTC-TACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACATCGACACCGGCGTCGACGGGCTCCGCCGGCTCCGCTCCATCGCGCTGTCCGACGCCGCCGCTCTCGGCGACCCGGCGGCGGAGCTCCTCC-GGACGGCCGCCGACTTCTCGCGGGTGTTCCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGAGGACGGGGCGGACAGCTGGGCGCCCCTCCGCGTCGCCGGAGGCATCCCGCTCCACCCGGGGTTCGTGCACGCCACCCGGAGCAAGTCGGAGCTGGAGCCGAGGCCCGACTCGGTG-TTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTCCCCGAGGGCGCCACCAAGGACCACCCGTACACGTGCCCGATGGGGCCGA-ACGCGCCGCCGCTGGAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCAT-CCGGGA-CACCAA-CCT-C-GAG-TAC-TGC-GACGCGCTGCGCACCG-CCGG-CAAGGACGTGGAGGTG-CTGGTCA-ACCGCGGCATGAGCCACTCCTTCTACCTCAACAAG-TAC-GCCGTCG-ACA-TGGA-CCC-GGC-CAC-CGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT-CA-AGAGCTTCGTCGACCGCCACTAG-ACGTGGAGATCAGA-GAAGCGCATCTTCTCCACCGTACGTGTAGCAC-CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT-GACTGTCCGCCATACGTTGGCCTGAGCTTGA-CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC-AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATTCTCTCACAAAAAAAAA]
[-] EMBL AK108696 [AAGTCAATATAATTTTCGCAATAAAAAAAGAACACTCGCTATTCGGTTGGTCTAGTCGCTCTACAAGTCCACACACGACCCTACTCCTAACCTGTCAAGTCTCCACCACTCTGCAGCAACTCTGCTTGCGAATCCGGGAAAATTTTGCTTGGCAATCGCCGTGATATTCCGTGCGAAACTTCCCAGTAGTACAATCGGCAACTGCAACACGGAGCCACTCGGTCACCGGCAATAAAACCCTCGCCACTTCATCCATCTCTCGCACCGCGCACATCGAATCGCATCGCACACACGGCGGAAGCAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGCGGCGGCGG TCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAACCGGTGCCCGCCTACGCCGAGCCGCGCGACGGCCACACGCTGCACGACCTCCCCGGCGAGCCCAACCTCCGCGTGTACCTCCCCGAGGTCGCCCTCGCCGAGCGGCGCCTCCCCGTCGTCGTGCAGCTCCACGGTGGCGGCTTCTGCATCTCCCACCCGTCCTGGCTCATGTACCACCACTTC TACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACATCGACACCGGCGTCGACGGGCTCCGCCGGCTCCGCTCCATCGCGCTGTCCGACGCCGCCGCTCTCGGCGACCCGGCGGCGGAGCTCCTCC GGACGGCCGCCGACTTCTCGCGGGTGTTCCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGAGGACGGGGCGGACAGCTGGGCGCCCCTCCGCGTCACCGGAGGCATCCCGCTCCACCCGGGGTTCGTGCACGCCACCCGGAGCAAGTCGGAGCTGGAGCCGAGGCCCGACTCGGTG TTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTCCCCGAGGGCGCCACCAAGGACCACCCGTACACGTGCCCGATGGGGCCGA ACGCGCCGCCGCTGGAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCAT CCGGGA CACCAA CCT C GAG TAC TGC GACGCGCTGCGCACCG CCGG CAAGGACGTGGAGGTG CTGGTCA ACCGCGGCATGAGCCACTCCTTCTACCTCAACAAG TAC GCCGTCG ACA TGGA CCC GGC CAC CGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT CA AGAGCTTCGTCGACCGCCACTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCACCGTACGTGTAGCAC ]
[+] EMBL AK072435 [ CATCGAATCGCATCGCACACACGGCGGAAGCAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGCGGCGGCGG TCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAGCCGGTGCCCGCCTACGCCGAGCCGCGCGACGGCCACACGCTGCACGACCTCCCCGGCGAGCCCAACCTCCGCGTGTACCTCCCCGAGGTCGCCCTCGCCGAGCGGCGCCTCCCCGTCGTCGTGCAGCTCCACGGTGGCGGCTTCTGCATCTCCCACCCGTCCTGGCTCATGTACCACCACTTC TACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACATCGACACCGGCGTCGACGGGCTCCGCCGGCTCCGCTCCATCGCGCTGTCCGACGCCGCCGCTCTCGGCGACCCGGCGGCGGAGCTCCTCC GGACGGCCGCCGACTTCTCGCGGGTGTTCCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGAGGACGGGGCGGACAGCTGGGCGCCCCTCCGCGTCGCCGGAGGCATCCCGCTCCACCCGGGGTTCGTGCACGCCACCCGGAGCAAGTCGGAGCTGGAGCCGAGGCCCGACTCGGTG TTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTCCCCGAGGGCGCCACCAAGGACCACCCGTACACGTGCCCGATGGGGTCGA ACGCGCCGCCGCTGGAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCAT CCGGGA CACCAA CCT C GAG TAC TGC GACGCGCTGCGCACCG CCGG CAAGGACGTGGAGGTG CTGGTCA ACCGCGGCATGAGCCACTCCTTCTACCTCAACAAG TAC GCCGTCG ACA TGGA CCC GGC CAC CGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT CA AGAGCTTCGTCGACCGCCACTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCACCGTACGTGTAGCAC CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGG ]
[+] EMBL AK058526 [ ATCGAATCGCATCGCACACACGGCGGAAGCAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGCGGCGGCGG TCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAGCCGGTGCCCGCCTACGCCGAGCCGCGCGACGGCCACACGCTGCACGACCTCCCCGGCGAGCCCAACCTCCGCGTGTACCTCCCCGAGGTCGCCCTCGCCGAGCGGCGCCTCCCCGTCGTCGTGCAGCTCCACGGTGGCGGCTTCTGCATCTCCCACCCGTCCTGGCTCATGTACCACCACTTC TACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACATCGACACCGGCGTCGACGGGCTCCGCCGGCTCCGCTCCATCGCGCTGTCCGACGCCGCCGCTCTCGGCGACCCGGCGGCGGAGCTCCTCCGGGACGGCCGCCGACTTCTCGCGGGTGTTCCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGAGGACGGGGCGGACAGCTGGGCGCCCCTCCGCGTCGCCGGAGGCATCCCGCTCCACCCGGGGTTCGTGCACGCCACCCGGAGCAAGTCGGAGCTGGAGCCGAGGCCCGACTCGGTG TTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTCCCCGAGGGCGCCACCAAGGACCACCCGTACACGTGCCCGATGGGGCCGA ACGCGCCGCCGCTGGAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCAT CCGGGA CACCAA CCT C GAG TAC TGC GACGCGCTGCGCACCG CCGG CAAGGACGTGGAGGTG CTGGTCA ACCGCGGCATGAGCCACTCCTTCTACCTCAACAAG TAC GCCGTCG ACA TGGA CCC GGC CAC CGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT CA AGAGCTTCGTCGACCGCCACTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCACCGTACGTGTAGCAC CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATC ]
[+] EMBL AU091470 [ ACGGCGGAAGCAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGCGGCGGCGG TCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAGCCGGTGCCCGCCTACGCCGAGCCGCGCGACGGCCACACGCTGCACGACCTCCCCGGCGAGCCCAACCTCCGCGTGTACCTCCCCGAGGTCGCCCTCGCCGAGCGGCGCCTCCCCGTCGTCGTGCAGCTCCACGGTGGCGGCTTCTGCATCTCCCACCCGTCCTGGCTCATGTACCACCACTTCTTACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACATCGACACCGGCGTCGACGGGCTCCGCCGGCTCCGCTCCATCG ]
[+] EMBL AU065367 [ GGCGGAA NAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCNGCCGCCACCGACGCCGTCGCGGCGGCNGCGGTTCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCANCCGGTGCCCGCCTACNCCGAGCCGCGCGACGGCCACANGCTGCACGAACTCCCCGGCGAGCCCAACCTCCGCGTGTAACTTCCCGAAGTNGGCCTCGC ]
[+] EMBL AU065407 [ GGCGGAAG AACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGG GGCGNCGGTTCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGT GACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAGCCGGTGCCCGNCTACGNCGAGCCGCGCGACGGCCACACGNTGCACGACCTCCCCGGC ]
[+] EMBL OSC756 [ GGAGCCGAGGCCCGACTC GTGNTTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATNGC CTCCCCGAGGGCNCANCCAAGGACCACCCGTACACGTGCCCGATGGGG CGANACGCGCCGCCGCTGGAGTCCGTCCCGCTNCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCAT CCGGGA CACCAA CCT C GAG TACTTGC GACGCGCTG GCACCG CCGG CAAGGACGTGGAGGTG CTGGTCA ACCGCGGCATGAG CACTTCTTCTACCTCAACAAG TAC GCCGTCG ACATTGGA CCC CGG CAC CGGGAAGAag ]
[+] EMBL AU056827 [ ACCTCATCCCGGGACCACCAACCCTCC GAG TAC TGC GACGC CTGCGCACCG CCGG CAAGGACGTGGAGGTG CTGGTCA ACCGCGGCNTGAGCCACTCCTTCTACCTCAACAAG TAC GCCGTCG ACA TGGACCCC GGC CAC CGGCGAGAGGACCCGGGAGCTCGTCGACGCCATCCA AGAGCTTCGTCGACCGCCACTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCACCGTACGTGTAGCAC CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATTCTCTCAAAAAAAAA ]
[+] EMBL BI810350 [ CCAA CCT CTGAGTTTC TTCTGACGCGCTGCGC CCGTCCGGTCAAGGACGTGGAGGTGTCTGGTCATACCGCGGCATGAGCCACTCCTTTTACCTCAACAAG TAC GCCGTGG ACA TGGA CCCAGGCACACACGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT CA AGAGCTTCGTCGACCGCCACTAG ACGTGGAGATCAGA GAAGCGCATCGTCTCCACCGTACGTGTAGCACACTTCCAGGCTGTAATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCGTGTGTGTGGCTTGCTGTCCATGTCAA CCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTACAAAATAAATAATTGGATCATTCCCGAAaaaaa ]
[+] EMBL AU094460 [ AAGGACGTGAAGGTN CTGGTCA NCCGCGGCATGAGCCACTCCTTCTACCTCAACAAG TAC GCCGTCG ACA TGGA CCC GGC CAC CGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT CA AGAGCTTCGTCGACCGCCACTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCACCGTACGTGTAGCAC CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATTCTCTCACATAAAAAAA]
[+] EMBL BI796422 [ AAGTTACGGCCGTCGTACA TGGA CCC GGC CAC CGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT CACAGAGCTTCGTCGACCGCCACTAGAACGTGGAGATCAGAGGAAGCGCATCGTCTCCACCGTACGTGTAGCAC CTT CAGGCTGTAATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACG TGGCCTGAGCTTGA CCGTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCC ATGATAAAGGGTGGC TTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCCATCCGTCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAAa ]
[+] EMBL AU184705 [ CACTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCNCCGTACGTGTAGCAC CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATTCTCTCACAAAAAA ]
[+] EMBL AU184708 [ CTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCACCGTACGTGTAGCAC CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATTCTCTCACAAAAAA ]
[+] EMBL CA998471 [ GGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTAaaaaaaaaa ]
[+] EMBL CA998480 [ GGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTACTTGAAGACTTGAAGTTGATACGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCC ]
[+] EMBL AU029716 [ GTCATGGACTGTCCNCCATACGTTGNCCTGAGCTTGACCCTTGTGTGTGGCTTGCTGTCCATGTCAANCCGATATCATGTNCGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATaaaaa ]
consensusID : consensus_14953#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence
[TTCCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGAGGACGGGGCGGACAGCTGGGCGCCCCTCCGCGTCGCCGGAGNATNCCCGCTCCACCCGGGGTTCGTGCACGCCACCCGGAGCAAGTCGGAGCTGGAGCCGAGGCCCGACTCGGTGTTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTCCCCGAGGGCGCCACCAAGGACCACCCGTACACGTGCCCGATGGGGCCGAACGCGCCGCCGCTGGAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCATCCGGGACACCAACCTCGAGTACTGCGACGCGCTGCGCACCGCGCGAACGGCCACACGGCTGCACGACCTCCCCGGCGAGCCCAAACCTCCGCGTGTA]
[+] EMBL AU029715 [TTCCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGAGGACGGGGCGGACAGCTGGGCGCCCCTCCGCGTCGCCGGAGNATNCCCGCTCCACCCGGGGTTCGTGCACGCCACCCGGAGCAAGTCGGAGCTGGAGCCGAGGCCCGACTCGGTGTTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTCCCCGAGGGCGCCACCAAGGACCACCCGTACACGTGCCCGATGGGGCCGAACGCGCCGCCGCTGGAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCATCCGGGACACCAACCTCGAGTACTGCGACGCGCTGCGCACCGCGCGAACGGCCACACGGCTGCACGACCTCCCCGGCGAGCCCAAACCTCCGCGTGTA]
consensusID : consensus_14953#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence
[ACTTCTACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACGTCGACGCCATCAAGAGCTTCGTCGACCGCCACTAGACGTGGAGATCAGAGAAGCGCATCTTCTCCACCGTACGTGTAGCACCTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCATGACTGTCCGCCATACGTTGGCCTGAGCTTGACCTTGTGTGTGGCTTGCTGNCCATGTCAAGCCGATATCATGTACGCATTAGTGGTTAAGGACGC]
[+] EMBL AU184834 [ACTTCTACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACGTCGACGCCATCAAGAGCTTCGTCGACCGCCACTAGACGTGGAGATCAGAGAAGCGCATCTTCTCCACCGTACGTGTAGCACCTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCATGACTGTCCGCCATACGTTGGCCTGAGCTTGACCTTGTGTGTGGCTTGCTGNCCATGTCAAGCCGATATCATGTACGCATTAGTGGTTAAGGACGC]
consensusID : consensus_14953#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[TCGCACACACNGCGGAAGAACTGCCACTAGCCTGACGTACGTACGGCAGCAATNGCCATCGCCACCGAGTCGCAGCAGGCCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGNNCGAATNCNGTGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCNNTGA]
[+] EMBL C26070 [TCGCACACACNGCGGAAGAACTGCCACTAGCCTGACGTACGTACGGCAGCAATNGCCATCGCCACCGAGTCGCAGCAGGCCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGNNCGAATNCNGTGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCNNTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14953#0 AAGTCAATATAATTTTCGCAATAAAAAAAGAACACTCGCTATTCGGTTGGTCTAGTCGCT 60
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 CTACAAGTCCACACACGACCCTACTCCTAACCTGTCAAGTCTCCACCACTCTGCAGCAAC 120
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 TCTGCTTGCGAATCCGGGAAAATTTTGCTTGGCAATCGCCGTGATATTCCGTGCGAAACT 180
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 TCCCAGTAGTACAATCGGCAACTGCAACACGGAGCCACTCGGTCACCGGCAATAAAACCC 240
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 TCGCCACTTCATCCATCTCTCGCACCGCGCACATCGAATCGCATCGCACACACGGCGGAA 300
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 GCAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCA 360
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 GGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGCGGCGGCGGTCGGGCGCAAGGT 420
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 GGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTG 480
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 GACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAGCCGGTGCCCGCCTACGCCGAGCCGCG 540
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 CGACGGCCACACGCTGCACGACCTCCCCGGCGAGCCCAACCTCCGCGTGTACCTCCCCGA 600
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 GGTCGCCCTCGCCGAGCGGCGCCTCCCCGTCGTCGTGCAGCTCCACGGTGGCGGCTTCTG 660
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 CATCTCCCACCCGTCCTGGCTCATGTACCACCACTTCTACGCGCGCCTCGCGTGCGCGCT 720
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 CCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCA 780
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 CATCGACACCGGCGTCGACGGGCTCCGCCGGCTCCGCTCCATCGCGCTGTCCGACGCCGC 840
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 CGCTCTCGGCGACCCGGCGGCGGAGCTCCTCCGGACGGCCGCCGACTTCTCGCGGGTGTT 900
consensus_14953#1 ----------------------------------------------------------TT 2
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 CCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGA 960
consensus_14953#1 CCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGA 62
consensus_14953#3 --------------------------------------------TCGCACACA-CNGCGG 15
consensus_14953#2 -----------------------ACTTCTACGCGCGCCTCGCGTGCGCGCTCCCGGCCGT 37
*** * * **
consensus_14953#0 GGACGGGGCGGACAG------CTGGGCGCCCCTCCGCGTC--GCCGGAGGCATCCCGCTC 1012
consensus_14953#1 GGACGGGGCGGACAG------CTGGGCGCCCCTCCGCGTC--GCCGGAGNATNCCCGCTC 114
consensus_14953#3 AAGAACTGCCACTAG------CCTGACGTACGT-----AC--GGCAGCAATNGCCATCGC 62
consensus_14953#2 GGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACGTCGACGC 97
** * * ** * * * * * * * *
consensus_14953#0 CACCCGGGGTTCGTGCA--CGCCACCCG--GAGCAAGTCGGAGCTGGAGCCGAGGCCCGA 1068
consensus_14953#1 CACCCGGGGTTCGTGCA--CGCCACCCG--GAGCAAGTCGGAGCTGGAGCCGAGGCCCGA 170
consensus_14953#3 CACC--GAGTCGCAGCA--GGCCA---G--GTGCAAGCCGCCGCCACCGACGCCGTCGCG 113
consensus_14953#2 CATCAAGAGCTTCGTCGACCGCCACTAGACGTGGAGATCAGAGA-AGCGCATCTTCTCCA 156
** * * * * **** * * * * * * *
consensus_14953#0 CTCGGTGTTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTC---CCCGA 1125
consensus_14953#1 CTCGGTGTTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTC---CCCGA 227
consensus_14953#3 GNNCGAATNCNGTGGCG-CAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGA 172
consensus_14953#2 CCGTACGTGTAGCACCTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCATGACTGTCCGC 216
* * * * * * * * **
consensus_14953#0 GG-GCGCCACCAAGGACC-ACCCGTACACGTGCCCGATGGGGCCGAACGCGCCGCCGCTG 1183
consensus_14953#1 GG-GCGCCACCAAGGACC-ACCCGTACACGTGCCCGATGGGGCCGAACGCGCCGCCGCTG 285
consensus_14953#3 CG-ACGGCACCGTG-ACC-GCACGTGGACGGGTCCC------CCCGAGGTGCTCCCNNTG 223
consensus_14953#2 CATACGTTGGCCTGAGCTTGACCTTGTGTGTGGCTTGCTGNCCATGTCAAGCCGATATCA 276
** * * * * * * * * * **
consensus_14953#0 GAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCATCCGGGAC 1243
consensus_14953#1 GAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCATCCGGGAC 345
consensus_14953#3 A----------------------------------------------------------- 224
consensus_14953#2 TGTACGCATTAGTGGTTAAGGACGC----------------------------------- 301
consensus_14953#0 ACCAACCTCGAGTACTGCGACGCGCTGCGCACCGCCGGCAAGGACGTGGAGGTGCTGGTC 1303
consensus_14953#1 ACCAACCTCGAGTACTGCGACGCGCTGCGCACCGCGCGAACGGCCACACGGCTGCACGAC 405
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 AACCGCGGCATGAGCCACTCCTTCTACCTCAACAAGTACGCCGTCGACATGGACCCGGCC 1363
consensus_14953#1 CTCCCCGGC--GAGCCCAAACCTCCGCGTGTA---------------------------- 435
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 ACCGGCGAGAGGACCCGGGAGCTCGTCGACGCCATCAAGAGCTTCGTCGACCGCCACTAG 1423
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 ACGTGGAGATCAGAGAAGCGCATCTTCTCCACCGTACGTGTAGCACCTTCCAGGTTGTGA 1483
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 TTGTTTCTCGTCTCGTGTCATGACTGTCCGCCATACGTTGGCCTGAGCTTGACCTTGTGT 1543
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 GTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTT 1603
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 GAGTAGTTACAAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAA 1663
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 GTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATG 1723
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 TGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGT 1783
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 CTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATTCTCT 1843
consensus_14953#1 ------------------------------------------------------------
consensus_14953#3 ------------------------------------------------------------
consensus_14953#2 ------------------------------------------------------------
consensus_14953#0 CACAAAAAAAAA 1855
consensus_14953#1 ------------
consensus_14953#3 ------------
consensus_14953#2 ------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||