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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14958#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1381 fasta sequence
[ACGACTCCCACCACCGCATCCTCCCCGCTTTTCCCACTCCCAACCACGACCGCGGCCGGCCGGCGAATCGCCTCGATTCCGGCGTGCGAATTCCTCCACCTCGCCGCCGCCGCTGCTCGCGACCGATCTTCACCTTCCGCTTCCCCCCCCCTGCAGCCGATTGGACTCGATCCTATCCTATCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGAGAGACCAGCCATGTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCAGGCCACCGCGCTGGCCTCCATCGACAAGCTCAGCGAGACTCTTGAAATGCTGGAAAAGAAAGAAAATTTGCTAGTGAAGAAAGCGAATCTTGAGGTTGAGAAGGCCAAGACCTTCACTAAAGCGAAGAATAAAAGAGCTGCAATACAATGCTTAAAGAGGAAGAGATTATATGAGCAACAGATTGAGCAGCTTGGTAATTTCCAATTAAGGATACATGATCAGATGATAATGCTGGAAGGTGCAAAGGCTACAACAGAGACTGTTGATGCATTGAGAACTGGAGCATCGGCGATGAAAGCAATGCACAAAGCGACAAATATTGACGACGTTGACAAGACAATGGATGAAATTAATGACAATATGGAGAATATGAGGCAGATCCAGGATCTACTATCTGCTCCTATTGGAGCTGCAGCTGATTTTGATGAAGATGAGCTGGAAGCTGAATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTAGCACCTACAACGACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCTGCCCAGAGCAGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATGTAATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACTCCTATATTGGACTCT-GGTGTACTCATGAAGATC-TTCCTA-GGAAGATGTCAGAGACACAGAAGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGTAAATCAAACAGAGCTATTTGAGCACATTATGAGCTAATAAAATGTACTACCCGTGATGGCGTCATTATGATGTGTTTCAGTCTGTACCATATCGTTTTGACGTTTTTAGTGTAGGTCAATTTATAGTTTCTCTTGATTCGAATCTGAAGTACTACATTGATGGTCGAATATAGACAGTTCTCTAAATAATGTGAATGATGATTGTATAGGGTGCTGTACATTCCTTCAGTTGTTGGTACTGTCGACCTGTAATAAATTATTAACCTAGGCTTTGTAGCTGTCTAAACAGTGATGTATATTAGTCGTGATAATTG]
[+] EMBL AK060097 [ACGACTCCCACCACCGCATCCTCCCCGCTTTTCCCACTCCCAACCACGACCGCGGCCGGCCGGCGAATCGCCTCGATTCCGGCGTGCGAATTCCTCCACCTCGCCGCCGCCGCTGCTCGCGACCGATCTTCACCTTCCGCTTCCCCCCCCCTGCAGCCGATTGGACTCGATCCTATCCTATCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGAGAGACCAGCCATGTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCAGGCCACCGCGCTGGCCTCCATCGACAAGCTCAGCGAGACTCTTGAAATGCTGGAAAAGAAAGAAAATTTGCTAGTGAAGAAAGCGAATCTTGAGGTTGAGAAGGCCAAGACCTTCACTAAAGCGAAGAATAAAAGAGCTGCAATACAATGCTTAAAGAGGAAGAGATTATATGAGCAACAGATTGAGCAGCTTGGTAATTTCCAATTAAGGATACATGATCAGATGATAATGCTGGAAGGTGCAAAGGCTACAACAGAGACTGTTGATGCATTGAGAACTGGAGCATCGGCGATGAAAGCAATGCACAAAGCGACAAATATTGACGACGTTGACAAGACAATGGATGAAATTAATGACAATATGGAGAATATGAGGCAGATCCAGGATCTACTATCTGCTCCTATTGGAGCTGCAGCTGATTTTGATGAAGATGAGCTGGAAGCTGAATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTAGCACCTACAACGACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCTGCCCAGAGCAGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATGTAATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACTCCTATATTGGACTCT GGTGTACTCATGAAGATC TTCCTA GGAAGATGTCAGAGACACAGAAGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGTAAATCAAACAGAGCTATTTGAGCACATTATGAGCTAATAAAATGTACTACCCG ]
[+] EMBL AU173372 [ ACCGCATCCTCCCCGCTTTTCCCACTCCCAACCACGACCGCGGCCGGCCGGCGAATCGCCTCGATTCCGGCGTGCGAATTCCTCCACCTCGCCGCCGCCGCTGCTCGCGACCGATCTTCACCTTCCGCTTCCCCCCCCCTGCAGCCGATTGGACTCGATCCTATCCTATCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGAGAGACCAGCCATGTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCAGGCCACCGCGCTGGCCTCCATCGACAAGCTCAGCGAGACTCTTGAAATGCTGGAAAAGAAAGAAAATTTGCTAGTGAAGAAAGCGAATCTTGAGGTTGAGAAGGCCAAGACCTTCACTAAAGCGAAGAATAAAAGAGCTGCAATACAATGCTTAAAGAGGAAGAGATT ]
[+] EMBL AK070667 [ ATCCTCCCCGCTTTTCCCACTCCCAACCACGACCGCGGCCGGCCGGCGAATCGCCTCGATTCCGGCGTGCGAATTCCTCCACCTCGCCGCCGCCGCTGCTCGCGACCGATCTTCACCTTCCGCTTCCCCCCCCCTGCAGCCGATTGGACTCGATCCTATCCTATCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGAGAGACCAGCCATGTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCAGGCCACCGCGCTGGCCTCCATCGACAAGCTCAGCGAGACTCTTGAAATGCTGGAAAAGAAAGAAAATTTGCTAGTGAAGAAAGCGAATCTTGAGGTTGAGAAGGCCAAGACCTTCACTAAAGCGAAGAATAAAAGAGCTGCAATACAATGCTTAAAGAGGAAGAGATTATATGAGCAACAGATTGAGCAGCTTGGTAATTTCCAATTAAGGATACATGATCAGATGATAATGCTGGAAGGTGCAAAGGCTACAACAGAGACTGTTGATGCATTGAGAACTGGAGCATCGGCGATGAAAGCAATGCACAAAGCGACAAATATTGACGACGTTGACAAGACAATGGATGAAATTAATGACAATATGGAGAATATGAGGCAGATCCAGGATCTACTATCTGCTCCTATTGGAGCTGCAGCTGATTTTGATGAAGATGAGCTGGAAGCTGAATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTAGCACCTACAACGACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCTGCCCAGAGCAGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATGTAATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACTCCTATATTGGACTCT GGTGTACTCATGAAGATC TTCCTA GGAAGATGTCAGAGACACAGAAGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGTAAATCAAACAGAGCTATTTGAGCACATTATGAGCTAATAAAATGTACTACCCGTGATGGCGTCATTATGATGTGTTTCAGTCTGTACCATATCGTTTTGACGTTTTTAGTGTAGGTCAATTTATAGTTTCTCTTGATTCGAATCTGAAGTACTACATTGATGGTCGAATATAGACAGTTCTCTAAATAATGTGAATGATGATTGTATAGGGTGCTGTACATTCCTTCAGTTGTTGGTACTGTCGACCTGTAATAAATTATTAACCTAGGCTTTGTAGCTGTCTAAACAGTGATGTAT ]
[+] EMBL CF297500 [ CGCTTTTCCCACTCCCAACCACGACCGCGGCCGGCCGGCGAATCGCCTCGATTCCGGCGTGCGAATTCCTCCACCTCGCCGCCGCCGCTGCTCGCGACCGATCTTCACCTTCCGCTTCCCCCCCCCTGCAGCCGATTGGACTCGATCCTATCCTATCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGAGAGACCAGCCATGTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCAGGCCACCGCGCTGGCCTCCATCGACAAGCTCAGCGAGACTCTTGAAATGCTGGAAAAGAAAGAAAATTTGCTAGTGAAGAAAGCGAATCTTGAGGTTGAGAAGGCCAAGACCTTCACTAAAGCGAAGAATAAAAGAGCTGCAATACAATGCTTAAAGAGGAAGAGATTATATGAGCAACAGATTGAGCAGCTTGGTAATTTCCAATTAAGGATACATGATCAGATGATAATGCTGGAAGGTGCAAAGGCTACAACAGAGACTGTTGATGCATTGAGAACTGGAGCATCGGCGATGAAAGCAATGCACAAAGCGACAAATATTGACGACGTTGACAAGACAATGGATGAAATTAATGACCATATGGAGAATATGAGGCAGATCCAGGATCTACTATCTGCTCCTATTGGAGCTGCAGCTG ]
[+] EMBL CB675326 [ CCTCCACCTCGCCGCCGCCGCTGCTCGCGACCGATCTTCACCTTCCGCTTCCCCCCCCCTGCAGCCGATTGGACTCGATCCTATCCTATCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGAGAGACCAGCCATGTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCAGGCCACCGCGCTGGCCTCCATCGACAAGCTCAGCGAGACTCTTGAAATGCTGGAAAAGAAAGAAAATTTGCTAGTGAAGAAAGCGAATCTTGAGGTTGAGAAGGCCAAGACCTTCACTAAAGCGAAGAATAAAAGAGCTGCAATACAATGCTTAAAGAGGAAGAGATTATATGAGCAACAGATTGAGCAGCTTGGTAATTTCCAATTAAGGATACATGATCAGATGATAATGCTGGAAGGTGCAAAGGCTACAACAGAGACTGTTGATGCATTGAGAACTGGAGCATCGGCGATGAAAGCAATGCACAAAGCGACAAATATTGACGACGTTGACAAGACAATGGATGAAATTAATGACAATATGGAGAATATGAGGCAGATCCAGGATCTACTATCTGCTCCTATTGGAGCTGCAGCTGATTTTGATGAAGATGAGCTGGAAGCTGAATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTAGCACCTACAACGACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCTGCCCAGAGCAGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATG NTA TT AGGCTTTGATAGGG ]
[-] EMBL CB675327 [ ATTTGCTAGTGAAGAAAGCGAATCTTGAGGTTGAGAAGGCCAAGACCTTCACTAAAGCGAAGAATAAAAGAGCTGCAATACAATGCTTAAAGAGGAAGAGATTATATGAGCAACAGATTGAGCAGCTTGGTAATTTCCAATTAAGGATACATGATCAGATGATAATGCTGGAAGGTGCAAAGGCTACAACAGAGACTGTTGATGCATTGAGAACTGGAGCATCGGCGATGAAAGCAATGCACAAAGCGACAAATATTGACGACGTTGACAAGACAATGGATGAAATTAATGACAATATGGAGAATATGAGGCAGATCCAGGATCTACTATCTGCTCCTATTGGAGCTGCAGCTGATTTTGATGAAGATGAGCTGGAAGCTGAATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTAGCACCTACAACGACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCTGCCCAGAGCAGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATGTAATT AGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACTCCTATATTGGACTCT GGTGTACTCATGAAGATC TTCCTA GGAAGATGTCAGAGACACAGAAGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGTAAATCAAACAGAGCTATTTGAGCACATGATGAGCTAATAAAATGTACTAC ]
[+] EMBL AU067972 [ GACAAGACAATGGATGAAATTAATGACAATATGGAGAATATGAGGCAGATCCAGGATCTACTATCTGCTCCTATTGGAGCTGCAGCTGATTTTGATGAAGATGAGCTGGAAGCTGAATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTAGCACCTACAACGACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGNCTTCTGCCCAGAGCAGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGNCAGAGATGGCTATG ]
[+] EMBL AU062483 [ nACAAGACAATGGATGAAATTAATGACAATATGGAGAATATGAGGCAGATCCAGGATCTACTATCTGCTCCTATTGGAGCTGCAGCTGATTTTNATGAAGATGAGCTGGAAGCTGAATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTAGCACCTACAACGACTNCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCTGCCCAGAGCAGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATGTAATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACTCCTATATTGGACTCTGGGTGTACTCATGAAGATCTTTCCTAGGGAGGATGTCAGAGACACAGAGGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGT ]
[+] EMBL AU067973 [ ACAAGACAATGGATGAANTTNATGACANTATGGAGAATATGAGGCAGATCCAGGATCTACTATCTGCTCCTATTGGAGCTGCAGCTGATTTTGATGAAGATGAGCTGGAAGCTGAATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTAGCACCTACAACGACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCTGCCCAGAGCAGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATGTAATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACTCCTATATTGGANTCT GGTGTACTCATGAAGATC TTCCTA GGAAGATNTCAGAGACACAGANGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTANCATGTCATGTTACTGCCTTGTAAATCAAACAGAGCTATTTGAGCACATTATGAGCTAATAAAATGTACTACCCGTGATGGCGTCAaaaaa ]
[-] EMBL BI305317 [ CTGAATTAGCAGATCTGGAGGGGGAGGAATTGNAGGCAGAGCTTCTAGCACCTACAACGACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCTGCCCAGAGCAGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATGTAATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACTCCTATATTGGACTCT GGTGTACTCATGAAGATC TTCCTA GGAAGATGTCAGAGACACAGAAGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGTAAATCAAACAGAGCTATTTGAGCACATTATGAGCTAATAAAATGTACTACCCGTGATGGCGTCATTATGATGTGTTTCAGTCTGTACCATATCGTTTTGACGTTTTTAGTGTAGGTCAATTTATAGTTTCTCTTGATTCGAATCTGAAGTACTACATTGATGGTCGAATATAGACAGTTCTCTAAATAATGTGAATGATGATTGTATAGGGTGCTGTACATTCCTTCAGTTGTTGGTACTGTCGACCTGTAATAAATTATTAACCTAGGCTTTGTAGCTGTCTAAACAGTGATGTATATTAGTCGTGATAATTG]
[+] EMBL AU173373 [ CGGCCTTCTGCCCAGAGCAGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATGTAATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACTCCTATATTGGACTCT GGTGTACTCATGAAGATC TTCCTA GGAAGATGTCAGAGACACAGAAGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGTAAATCAAACAGAGCTATTTGAGCACATTATGAGCTAATAAAATGTACTACCCGTGATGGCGTCATTATGATGTGTTTCAGTCTGTACCATATCGTTTTGACGTTTTTAGTGTAGGTCAATTTATAGTTTCTCTTGATTCGAATCTGAAGTACTACATTGATGGTCGAATATAGACAGTTCTCTAAAaa ]
[-] EMBL CF278814 [ AGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATGTAATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACTCCTATATTGGACTCC GGTGTACTCATGAAGATC TTCCTA GGAAGATGTCAGAGACACAGAAGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGTAAATCGAACAGAGCTATTTGAGCACATTATGAGCTAATAAAATGTACTACCCGTGATGGCGTCATTATGATGTGTTTCAGTCTGTACCATATCGTTTTGACGTTTTTAGTGTAGGTCAATTTATAGTTTCTCTTGATTCGAATCTGAAGTACTACATTGATGGTCGAATATAGACAGTTCTCTAAATAATGTGAATGATGATTGTATAGGGTGCTGTACATTCCTTCAGTTGTTGGTACTGTCGACCTGTAATAAATTATTAACCTAGGCTTaaaaa ]
[+] EMBL AU163775 [ GACTCT GGTGTACTCATGAAGATC TTCCTA GGAAGATGTCAGAGACACAGAAGCANGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGTAAATCAAACAGAGCTATTTGAGCACATTATGAGCTAATAAAATGTACTACCCGTGATGGCGTCATTATGATGTGTTTCAGTCTGTACCATATCGTTTTGACGTTTTTAGTGTAGGTCAATTTATAGTTTCTCTTGATTCGAATCTGAAGTACTACATTGATGGTCGAATATAGACAGTTCTCTAAATAATGTGAATGATGATTGTATAGGGTGCTGTACATTCCTTCAaaaa ]
consensusID : consensus_14958#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 802 fasta sequence
[TCCCCGCTTTTCCCACTCCCAACCACGACCGCGGCCGGCCGGCGAATCGCCTCGATTCCGGCGTGCGAATTCCTCCACCTCGCCGCCGCCGCTGCTCGCGACCGATCTTCACCTTCCGCTTCCCCCCCCCTGCAGCCGATTGGACTCG-----ATCCTATCCTATCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGAGAGACCAGCCATGTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCAGGCCACCGCGCTGGCCTCCATCGACAAGCTCAGCGAGACTCTTGAAATGCTGGAAAAGAAAGAAAATTTGCTAGTGAAGAAAGCGAATCTTGAGGTTGAGAAGGCCAAGACCTTCACTAAAGCGAAGAATAAAAGAGCTGCAATACAATGCTTAAAGAGGAAGAGATATATGAGCAACAGATTGAGCAGCTTGGAATTTCCCATTAGGGATCCTGTCAGATGATATGCCTGAGGTGCAAGGCTCCACCAGACTGTGATGCATGAGACCTGACCTTCGGATAAAGCATGGCCAAGGGAATATTTGGCACTTGCCACACTGGTGGATATGCACATGTGATATATGCGCGCTCAGATCATTGTGCCTGTGAGCGCGGCTTTTGAAAACTGACGGAANCTTAATCGCCCTGGGGGGGGGACTTACCTCACGCGCCTTGTCGGTGAGAACAGGTTCCCTCGATCCAAAAATGAGTTCGCAAGGTGTAGCGTTGGGCCGAAAACGACTATGCCGGGCCAGTCTGAGTGGGGACGAATGGCGTCACCACAG]
[+] EMBL AW155102 [TCCCCGCTTTTCCCACTCCCAACCACGACCGCGGCCGGCCGGCGAATCGCCTCGATTCCGGCGTGCGAATTCCTCCACCTCGCCGCCGCCGCTGCTCGCGACCGATCTTCACCTTCCGCTTCCCCCCCCCTGCAGCCGATTGGACTCG ATCCTATCCTATCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGAGAGACCAGCCATGTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCAGGCCACCGCGCTGGCCTCCATCGACAAGCTCAGCGAGACTCTTGAAATGCTGGAAAAGAAAGAAAATTTGCTAGTGAAGAAAGCGAATCTTGAGGTTGAGAAGGCCAAGACCTTCACTAAAGCGAAGAATAAAAGAGCTGCAATACAATGCTTAAAGAGGAAGAGATATATGAGCAACAGATTGAGCAGCTTGGAATTTCCCATTAGGGATCCTGTCAGATGATATGCCTGAGGTGCAAGGCTCCACCAGACTGTGATGCATGAGACCTGACCTTCGGATAAAGCATGGCCAAGGGAATATTTGGCACTTGCCACACTGGTGGATATGCACATGTGATATATGCGCGCTCAGATCATTGTGCCTGTGAGCGCGGCTTTTGAAAACTGACGGAANCTTAATCGCCCTGGGGGGGGGACTTACCTCACGCGCCTTGTCGGTGAGAACAGGTTCCCTCGATCCAAAAATGAGTTCGCAAGGTGTAGCGTTGGGCCGAAAACGACTATGCCGGGCCAGTCTGAGTGGGGACGAATGGCGTCACCACAG]
[+] EMBL CA756791 [ CCACTCCCAACCACGACCGCGGCCGGCCGGCGAATCGCCTCGATTCCGGCGTGCGAATTCCTCCACCTCGCCGCCGCCGCTGCTCGCGACCGATCTTCACCTTCCGCTT CCCCCTCCTGCAGCCGATTGGACTCGATCCTATCCTATCCTATCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGAGAGACCAGCCATGTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCC ]
[+] EMBL CF278815 [ tCTCCCAACCACGACCGCGGTCGGCCGGCGAATCGCCTCGATTCCGGCGTGCGAATTCCTCCACCTCGCCGCCGCCGCTGCTCGCGACCGATCTTCACCTTCCGCTTCCCCCCCCCTGCAGCCGATTGGACTCG ATCCTATCCTATCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGAGAGACCAGCCATGTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCAGGCCACCGCGCTGGCCTCCATCGACAAGCTCAGCGAGACTCTTGAAATGCTGGAAAAGAAAGAAAATTTGCTAGTGAAGAAAGCGAATCTTGAGGTTGAGAAGGCCATGACCTTCACTAAAGCGAAGAATAAAAGAGCTGCAATACAATGCTTAAA ]
[+] EMBL OSC831 [ CTTCCGCTTCCCCCCCCCTGCAGCCGATTGGACTCG ATCCTATCCTATCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGAGAGACCAGCCATGTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCAGGCCACCGCGCTGGCCTCCATCGACAAGCTCAGCGAGACTCTTGAAATGCTGGAAAAGAAAGAAAATTTNCTAGTGAAGAAAGCGAATCTTGAGGTTNAGAAGGCCAAGACCTTC ]
consensusID : consensus_14958#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 704 fasta sequence
[TTTGAGCAACAGATTGAGCAGCTTGGTAATTTCCAATTAAGGATACATGATCAGATGATAATGCTGGAAGGTGCAAAAGCTACAACAGAGACTGTTGATGCATTGAGAACTGGAGCATGGGCGATGAAAGCAATGCACAAAGCGACAAATATTGACGACGTTGACAAGACAATGGATGAAATTAATGACAATATGGAGAATATGAGGCAGATCCAGGATTTACTATCTGCTCCTATGGGAGCTGCAGCTGATTTTGATGAAGATGAGCTGGAAGCTGAATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTAGCACCTACAACGACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCTGCCCAGAGCAGCGAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATGTAATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACTCCTATATTAGACTCTGGTGTACTCATGAAGATCTTCCTAGGAAGATGTCAGAGACACAGAAGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGTAAATCAAACAGAGCTATTTGAGCACATTATGAGCTAATAAAATGTGCTACCCGTGATGGCGTCAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA763541 [TTTGAGCAACAGATTGAGCAGCTTGGTAATTTCCAATTAAGGATACATGATCAGATGATAATGCTGGAAGGTGCAAAAGCTACAACAGAGACTGTTGATGCATTGAGAACTGGAGCATGGGCGATGAAAGCAATGCACAAAGCGACAAATATTGACGACGTTGACAAGACAATGGATGAAATTAATGACAATATGGAGAATATGAGGCAGATCCAGGATTTACTATCTGCTCCTATGGGAGCTGCAGCTGATTTTGATGAAGATGAGCTGGAAGCTGAATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTAGCACCTACAACGACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCTGCCCAGAGCAGCGAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATGTAATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACTCCTATATTAGACTCTGGTGTACTCATGAAGATCTTCCTAGGAAGATGTCAGAGACACAGAAGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGTAAATCAAACAGAGCTATTTGAGCACATTATGAGCTAATAAAATGTGCTACCCGTGATGGCGTCAAAAAAAAAAAAA ]
[-] EMBL CF297501 [ GCAGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATGTAATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACTCCTATATTGGACTCTGGTGTACTCATGAAGATTTTCCTAGGAAGATGTCAGAGACACAGAAGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGTAAATCAAACAGAGCTATTTGAGCCCATTATGAGTTAATAAAATGTACTACCCGTGATGGCGTCAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14958#0 ACGACTCCCACCACCGCATCCTCCCCGCTTTTCCCACTCCCAACCACGACCGCGGCCGGC 60
consensus_14958#2 ------------------------------------------------------------
consensus_14958#1 ------------------------------------------------------------
consensus_14958#0 CGGCGAATCGCCTCGATTCCGGCGTGCGAATTCCTCCACCTCGCCGCCGCCGCTGCTCGC 120
consensus_14958#2 ------------------------------------------------------------
consensus_14958#1 ------------------------------------------------------------
consensus_14958#0 GACCGATCTTCACCTTCCGCTTCCCCCCCCCTGCAGCCGATTGGACTCGATCCTATCCTA 180
consensus_14958#2 ------------------------------------------------------------
consensus_14958#1 ------------------------------------------------------------
consensus_14958#0 TCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGAGAGACCAGCCATGTCGGGGGT 240
consensus_14958#2 ------------------------------------------------------------
consensus_14958#1 ------------------------------------------------------------
consensus_14958#0 GTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCAGGCCACCGCGCTGGCCTCCAT 300
consensus_14958#2 ------------------------------------------------------------
consensus_14958#1 ------------------------------------------------------------
consensus_14958#0 CGACAAGCTCAGCGAGACTCTTGAAATGCTGGAAAAGAAAGAAAATTTGCTAGTGAAGAA 360
consensus_14958#2 ------------------------------------------------------------
consensus_14958#1 ------------------------------------------TCCCCGCTTTTCCCACTC 18
consensus_14958#0 AGCGAATCTTGAGGTTGAGAAGGCCAAGACCTTCACTAAAGCGAAGAATAAAAGAGCTGC 420
consensus_14958#2 ------------------------------------------------------------
consensus_14958#1 CCAACCACGACCGCGGCCGGCCGGCGAATCGCCTCGATTCCGGCGTGCGAATTCCTCCAC 78
consensus_14958#0 AATACAATGCTTAAAGAGGAAGAGATTATATGAGCAACAGATTGAGCAGCTTGGTAAT-- 478
consensus_14958#2 ----------------------------TTTGAGCAACAGATTGAGCAGCTTGGTAAT-- 30
consensus_14958#1 CTCGCCGCCGCCGCTGCTCGCGACCGATCTTCACCTTCCGCTTCCCCCCCCCTGCAGCCG 138
* * * * * ** * * * *
consensus_14958#0 -TTCCAATTAAGGATACATGATCAGATGATAATGCTGGAAGGTGCAAAGGCTA--CAACA 535
consensus_14958#2 -TTCCAATTAAGGATACATGATCAGATGATAATGCTGGAAGGTGCAAAAGCTA--CAACA 87
consensus_14958#1 ATTGGACTCGATCCTATCCTATCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGA 198
** * * * ** *** ** ** * * * ** * * ** * * *
consensus_14958#0 GAGACTGTTGATGCATTGAGAACTGGAGCATCGGCGATGAAAG--CAATGCACAAAGCGA 593
consensus_14958#2 GAGACTGTTGATGCATTGAGAACTGGAGCATGGGCGATGAAAG--CAATGCACAAAGCGA 145
consensus_14958#1 GAGACCAGCCATGTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCA 258
***** *** * * * * * * * *** *** ** ** *** *
consensus_14958#0 CAAATATTGACGACGTTGACAAGACAATGGATGAAATTAATGACAATATGGAGAATATGA 653
consensus_14958#2 CAAATATTGACGACGTTGACAAGACAATGGATGAAATTAATGACAATATGGAGAATATGA 205
consensus_14958#1 GG-----CCACCGCGCTGGCCT--CCATCGACAAGCTCAGCGAGACTCTTGAAATGCTGG 311
** ** ** * * ** ** * * * ** * * * ** * **
consensus_14958#0 GGCAGATCCAGGATCTACTATCTGCTCCTATTGGAGCTGCAGCTGATTTTGATGAAGATG 713
consensus_14958#2 GGCAGATCCAGGATTTACTATCTGCTCCTATGGGAGCTGCAGCTGATTTTGATGAAGATG 265
consensus_14958#1 AAAAGAAAGAAAATTTGCTAGTGAAGAAAGCGAATCTTGAGGTTGAGAAGGCCAAGACCT 371
*** * ** * *** ** * *** * *
consensus_14958#0 AGCTGGAAGCTGA-ATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTAGCA 772
consensus_14958#2 AGCTGGAAGCTGA-ATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTAGCA 324
consensus_14958#1 TCACTAAAGCGAAGAATAAAAGAGCTGCAATACAATGCTTAAAGAGGAAGAGATATATGA 431
**** * * ** *** *** * * * * * * * ** *
consensus_14958#0 CCTACAAC---GACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCT 829
consensus_14958#2 CCTACAAC---GACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCT 381
consensus_14958#1 GCAACAGATTGAGCAGCTTGGAATTTCCCATTAGGGATCCTGTCAGATGATATGCCTGAG 491
* *** * ** * * *** * * * * * * * ****
consensus_14958#0 GCCCAGAGCAGCA--AAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTA 887
consensus_14958#2 GCCCAGAGCAGCG--AAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTA 439
consensus_14958#1 GTGCAAGGCTCCACCAGACTGTGATGCATGAGACCTGACCTTCGGATA-AAGCATGGCCA 550
* ** ** * * **** * *** * *** * * * ***** *
consensus_14958#0 TGTAATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACT 947
consensus_14958#2 TGTAATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACT 499
consensus_14958#1 AGGGAATA-TTTGGCA--CTT-------GCCACACTGGTGGAT-ATGCACATGTGATATA 599
* * ** *** *** *** * ** * *** * ** * ***
consensus_14958#0 CCTATATTGGACTCTGGTGTACTCATGAAGATCTTCCTAGGAAGATGTCAGAGACACAGA 1007
consensus_14958#2 CCTATATTAGACTCTGGTGTACTCATGAAGATCTTCCTAGGAAGATGTCAGAGACACAGA 559
consensus_14958#1 TGCGCGCTCAGATC-ATTGTGCCTGTGAGCGCGGCTTTTGAAAACTGACGGAANCTTA-- 656
* ** *** * *** * * ** ** * ** * *
consensus_14958#0 AGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGT 1067
consensus_14958#2 AGCAAGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGT 619
consensus_14958#1 ATCGCCCTGGGGGGGGGACTTACC--TCACGCGCCTTGTCG-GTGAGAACAGGTTCCCTC 713
* * *** * * ** *** * * * * ** ** * * *
consensus_14958#0 AAATCAAACA-GAGCTATTTGAGCACATTAT-GAGCTAATAA--AATGTACTACCCGTGA 1123
consensus_14958#2 AAATCAAACA-GAGCTATTTGAGCACATTAT-GAGCTAATAA--AATGTGCTACCCGTGA 675
consensus_14958#1 GATCCAAAAATGAGTTCGCAAGGTGTAGCGTTGGGCCGAAAACGACTATGCCGGGCCAGT 773
* **** * *** * * * * * ** * ** * * * * * *
consensus_14958#0 TGGCGTCATTATGATGTGTTTCAGTCTGTACCATATCGTTTTGACGTTTTTAGTGTAGGT 1183
consensus_14958#2 TGGCGTCAAAAAAAAAAAAAAAAAAAAAA------------------------------- 704
consensus_14958#1 CTGAGTGGGGACGAATGGCGTCACCACAG------------------------------- 802
* ** * * *
consensus_14958#0 CAATTTATAGTTTCTCTTGATTCGAATCTGAAGTACTACATTGATGGTCGAATATAGACA 1243
consensus_14958#2 ------------------------------------------------------------
consensus_14958#1 ------------------------------------------------------------
consensus_14958#0 GTTCTCTAAATAATGTGAATGATGATTGTATAGGGTGCTGTACATTCCTTCAGTTGTTGG 1303
consensus_14958#2 ------------------------------------------------------------
consensus_14958#1 ------------------------------------------------------------
consensus_14958#0 TACTGTCGACCTGTAATAAATTATTAACCTAGGCTTTGTAGCTGTCTAAACAGTGATGTA 1363
consensus_14958#2 ------------------------------------------------------------
consensus_14958#1 ------------------------------------------------------------
consensus_14958#0 TATTAGTCGTGATAATTG 1381
consensus_14958#2 ------------------
consensus_14958#1 ------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||