|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1319 fasta sequence
[CACAACCTCGCGTAAACACCCACGAAATTCTCCGCAAAAGATAAAAATAAAATAAAATAAAACCCACCCCCCTTCTCCTCTCCTCCATCTCCTCGCTTCGTCCCGTTCACACCACCACCGTCTCGTCGCCTCGTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCGCCGCCATTGCCACGC-GC-GCGCCCCCCACCCCACGAATGGAAGGAGGC-GGAGGC-GGAGGC-GGAGGC-GGTGGC-GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC-GGCA-TGATC-AAGGCCCTCACC-ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT-GGGAGGTGACCTT-GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGG-TTGGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA-AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA-AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA-GGAGGATGACCATGACAACAC-TTTGTGT-GGGACCTGTGGAACCAACGATGGCAAGGACG-AGTTCTGGATCTGTTGCGATAACTG-CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC-CGCTCGT-GCCGAGCATATCAAGCAGTA-CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCATTCATAGTGTGTAAACTTGCACATCTTGTGTCAACTGAAGCCTGAAGGTACGGCGGCTCCCCTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK071139 [CACAACCTCGCGTAAACACCCACGAAATTCTCCGCAAAAGATAAAAATAAAATAAAATAAAACCCACCCCCCTTCTCCTCTCCTCCATCTCCTCGCTTCGTCCCGTTCACACCACCACCGTCTCGTCGCCTCGTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCGCCGCCATTGCCACGC GC GCGCCCCCCACCCCACGAATGGAAGGAGGC GGAGGC GGAGGC GGAGGC GGTGGC GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GGCA TGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCGCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT GGGAGGTGACCTT GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGG TTGGCGTTAGTCGCAGTTCACAGTGATTCCTAGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCAACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACT TTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCATTCATAGTGTGTAAACTTGCACATCTTGTGTCAACTGAAGCCTGAAGGTACGGCGGC ]
[+] EMBL AF045571 [ ACCACCACCGTCTCGTCGCCTCGTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCGCCGCCATTGCCACGC GC GCGCCCCCCACCCCACGAATGGAAGGAGGC GGAGGC GGAGGC GGAGGC GGTGGC GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GGCA TGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT GGGAGGTGACCTT GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGG TTGGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGT GTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCAACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAAaaaaaa ]
[+] EMBL AF047428 [ CACCACCGTCTCGTCGCCTCGTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCGCCGCCATTGCCACGC GC GCGCCCCCCACCCCACGAATGGAAGGAGGC GGAGGC GGAGGC GGAGGC GGTGGC GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GGCA TGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT GGGAGGTGACCTT GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGG TTGGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCAACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCATTCATAGTGTGTAAACTTGCAaaaaaaa ]
[+] EMBL OSS14363A [ CACCACCGTCTCGTCGCCTCGTCNGCTGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCTCCGCCATTNCCACGC GC GCGCCCCCCACCCCACGAATGGAAGGAGGC GGAGGC GGAGGC GGAGGC GGTNGC GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACG GCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GCANTGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACATGGGGAGGTGACCTTNNCCAGCTGAGGAAGTTCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATt ]
[+] EMBL AU082688 [ TCGCCTCGTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCGCCGCCATTGCNACGC GC GCGCCCCCCACCCCACGAATGGAAGGNGGC GGAGGC GGAGGC GGAGGC GGTGGC GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACTTTCGGGGCCGCCGCGCCGGGNA TGATCAAAGGNCCTCACCAACCGATGTGG ]
[+] EMBL AU173000 [ GTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCGCCGCCATTGCCACGCAGCAGCGCCCCCCACCCCACGAATGGAAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGTGGCAGGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GGCA TGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT GGGAGGTGACCTT GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGGTTTGGCGTTAGTCGCA ]
[+] EMBL BP184955 [ acGAGGGAGGC GGAGGC GGAGGC GGAGGC GGTGGC GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GGCA TGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT GGGAGGTGACCTT GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGG TTGGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGAT ]
[+] EMBL CF325688 [ CACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GGCA TGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT GGGAGGTGACCTT GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGG TTGGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATA ]
[+] EMBL AU082754 [ GAAAGACTGG TTGGCGTTAGTCCCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCAACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACCNCG TCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCAaaaa ]
[+] EMBL C27366 [ GGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGANAAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACACTTTTGTGTGGGGACCTGTGG ACCAACGATGGCAAGGACG AGTTCTNGATCTGTTGCGATAACTT CGAGAAGTTGTATCATGGGANGTGCGT ]
[+] EMBL AK058384 [ GGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCAACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGT ]
[+] EMBL BI807479 [ AGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAA CTGAGTCTCGTTCGAAATCTAA CTGTCAGCCCCCACAGGATGAAGAGGGAA TGGTGATGATGAGGGAGAGGAAGATGGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCCACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAA TGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGACCCGGGCATGAGTAACAAGAAGTTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAAaaaaaaaa ]
[+] EMBL AU071045 [ AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCAACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCATTCATAGTGTGTAAACTTGCACATCTTGTGTCAACTGAAGCCTGAAGGTACGGCGGCTCCCCTGACCAAAAAAA ]
[+] EMBL BM420826 [ GAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGAC ACAC TTTGTGT GGGACCTGTGGAACC ACGATGGCAAGGACGTAGTTCTGGATCTGTTGCGATAACTGTCGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGTCGCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGACCCGGGCATGAGTAACCAGAA TTCNTTCGAACTGTGTTAGA TGGA TTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTCCCCTAGCTTTTCTAGTTTGTAACCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGT TTNAAACCTTCATCTTTCCTGTGTAAAaaa ]
[+] EMBL AK058498 [ AGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCT ]
[+] EMBL C27940 [ CTGGNTCTGTTGCGATAACTG CNAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT NCCGAGCATATCANGCAGTA CAAGGNCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGNTCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTG ]
[+] EMBL AU182846 [ AAGATCNCACC CGCTCGT GCCGAGCATATCAAGCAGTACCAAGTGCCCGGNCTGCACCAACAAGAGGGCCCGGGCATNAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCATTCATAGTGTGTAAACTTGCACATCTTGTGTCAACTGAAGCCTGAAGGTACGGCGGCTCCCCTGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence
[GCCACGGGCCGAGCCAAGGGGGATGCCAAGGCCGAGTTTTGGATTTGTTCCGATAACTCCGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCCCCCCCGCTCGTGCCGAGCATATCAAGCAGTCCAAGTGCCCGGGCTGCACCAACAAGAGGCCCCGGGCCTGAGTAACAAGAAGTTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTTTTAGATATTATCTTGCCCTAGCTTTTTTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAGACGGTAACTGTTGATTAACCTCCCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCCTTCATAGTGTGTAAACTTGCCCATTTTGTGTCAACTGAAGCCTGAAGGTATTGCGGCTCCCCTGGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA763693 [GCCACGGGCCGAGCCAAGGGGGATGCCAAGGCCGAGTTTTGGATTTGTTCCGATAACTCCGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCCCCCCCGCTCGTGCCGAGCATATCAAGCAGTCCAAGTGCCCGGGCTGCACCAACAAGAGGCCCCGGGCCTGAGTAACAAGAAGTTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTTTTAGATATTATCTTGCCCTAGCTTTTTTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAGACGGTAACTGTTGATTAACCTCCCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCCTTCATAGTGTGTAAACTTGCCCATTTTGTGTCAACTGAAGCCTGAAGGTATTGCGGCTCCCCTGGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14963#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence
[ATGATGAGGGAGAGGAAGAGGAGGATGACCATGNCAACACTTTGTGTGGGACCTGTGGAACCAACGATGGCAAGGACGAGTTCTGGATCTGTTGCGATAACTGCGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACTTCGTCGTGCCGAGCATATCAAGCAGTACAAGTGCCCGGNCTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAAAAAAAAAAAAA]
[+] EMBL AU030871 [ATGATGAGGGAGAGGAAGAGGAGGATGACCATGNCAACACTTTGTGTGGGACCTGTGGAACCAACGATGGCAAGGACGAGTTCTGGATCTGTTGCGATAACTGCGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACTTCGTCGTGCCGAGCATATCAAGCAGTACAAGTGCCCGGNCTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14963#0 CACAACCTCGCGTAAACACCCACGAAATTCTCCGCAAAAGATAAAAATAAAATAAAATAA 60
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 AACCCACCCCCCTTCTCCTCTCCTCCATCTCCTCGCTTCGTCCCGTTCACACCACCACCG 120
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 TCTCGTCGCCTCGTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCG 180
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 CCGCCATTGCCACGCGCGCGCCCCCCACCCCACGAATGGAAGGAGGCGGAGGCGGAGGCG 240
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 GAGGCGGTGGCGGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCA 300
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 CGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCCGGCATGATCAAGGCCCTCA 360
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 CCACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTT 420
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 ATGGATATCCTAATGAAACATGGGAGGTGACCTTGCCAGCTGAGGAAGTGCCCCCAGAGA 480
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 TCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGGT 540
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 TGGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAG 600
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 CCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGC 660
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 CAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGAAAGAAAAGACTCCCA 720
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 ACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTT 780
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 CGAAATCTAAGCTGTCAGCCCCCAAGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGG 840
consensus_14963#2 ---------------------------------------------ATGATGAGGGAGAGG 15
consensus_14963#1 ------------------------------------------------------------
consensus_14963#0 AAGAGGAGGATGACCATGACAACACTTTGTGTGGGACCTGTGGAACCAACG---ATGGCA 897
consensus_14963#2 AAGAGGAGGATGACCATGNCAACACTTTGTGTGGGACCTGTGGAACCAACG---ATGGCA 72
consensus_14963#1 --------------------------------GCCACGGGCCGAGCCAAGGGGGATGCCA 28
* ** * ** **** * *** **
consensus_14963#0 AGGACGAGTTCTGGATCTGTTGCGATAACTGCGAGAAGTGGTATCATGGGAAGTGCGTCA 957
consensus_14963#2 AGGACGAGTTCTGGATCTGTTGCGATAACTGCGAGAAGTGGTATCATGGGAAGTGCGTCA 132
consensus_14963#1 AGGCCGAGTTTTGGATTTGTTCCGATAACTCCGAGAAGTGGTATCATGGGAAGTGCGTCA 88
*** ****** ***** **** ******** *****************************
consensus_14963#0 AGATCACACCCGCTCGTGCCGAGCATATCAAGCAGTACAAGTGCCCGGACTGCACCAACA 1017
consensus_14963#2 AGATCACACTTCGTCGTGCCGAGCATATCAAGCAGTACAAGTGCCCGGNCTGCACCAACA 192
consensus_14963#1 AGATCCCCCCCGCTCGTGCCGAGCATATCAAGCAGTCCAAGTGCCCGGGCTGCACCAACA 148
***** * * *********************** *********** ***********
consensus_14963#0 AGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCA 1077
consensus_14963#2 AGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCA 252
consensus_14963#1 AGAGGCCCCGGGCCTGAGTAACAAGAAGTTGTGTCGAACTGTGTTAGAGTGGAGTTGTCA 208
***** ******* ************** *******************************
consensus_14963#0 ATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGC 1137
consensus_14963#2 ATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGC 312
consensus_14963#1 ATCTCCGGATGTCATGATCTTTTAGATATTATCTTGCCCTAGCTTTTTTAGTTTGTAAGC 268
******************** ************************** ************
consensus_14963#0 TTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTC 1197
consensus_14963#2 TTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTC 372
consensus_14963#1 TTGTCTCTAATTTAATTTTAGACGGTAACTGTTGATTAACCTCCCTGTGTTTAAAGCTTC 328
******************** ** ****************** *****************
consensus_14963#0 ATCTTTCCTGTGTTAATTCTAGCATTCATAGTGTGTAAACTTGCACATCTTGTGTCAACT 1257
consensus_14963#2 ATCTTTCCTGTGTTAAAAAAAAAAAAA--------------------------------- 399
consensus_14963#1 ATCTTTCCTGTGTTAATTCTAGCCTTCATAGTGTGTAAACTTGCCCATTTTGTGTCAACT 388
**************** *
consensus_14963#0 GAAGCCTGAAGGTACGGCGGCTCCCCTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1317
consensus_14963#2 ------------------------------------------------------------
consensus_14963#1 GAAGCCTGAAGGTATTGCGGCTCCCCTGGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 448
consensus_14963#0 AA 1319
consensus_14963#2 --
consensus_14963#1 --
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||