|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14978#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1572 fasta sequence
[CCTCGCTTCAATTCTAATCCCCCCCAAACCCCCTCCAAACCCTAACCCTACTACGACCTCCCCTTCCTCCGCCGCCGCCGCCACCGCCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCGATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGACATCTGTGAGAAGGGCGATTCTTACATAAGAGAGCAAAC-TGGCAACATCTACAAGAATGTGAAGAGGAAGATTGAAAGAGGTGTTGCTTTTCCAACATGTGTATCTGTGAACAACACAGTC-TGCCATTTCTC-TCCGCTAGCCACT-GATG-AGGCAGTCC-TGGAGGAAAATGATATGGTCAAAATTGATATGGGATGTCATATTGATGGTTTTATTGCCGTGGTGGCTCATACACATGTTATCCATGATGGAGCAGTCACTGGGAAAGCAGCAGATGTTCTTGCTGCTGCCAACACAGCGG-CAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCAAAATTGTGGAAGGAGTTCTCAGCCATCAGCTGAAACAGTTTGTCATTGAC-GGTAACAAAGTTGTACTTAGTGTG-TCCAATGCTGATACGAAGGTGGATGATGCTGAATTTGAGGAAAATGAAGTGTATG-CAATTGATATTGTCACCAGCACTGGAGAAGGGAAGCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACAAGAATTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAGATAAGCCAGAAGTTTCCTATCATGCCCTTCACTGCTAGGGCATTGGAAGAGAAGCGTGCACGCTTAGGTTTGGTGGAATGCATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATGGCTTGCTTTGGGGACAAAAACAAAGAAGAAAAGTGGTGCAAAAAAGAAGAAAGGTAAGAAAGGAGATGCAGCAGAAGCAGTGCCTATGGAGGAGGGTTCAAATGATGCAAACAAAGAATAACTGATTGTTCTTTTGAATTGCTTCCGTTAGTTTTGTACTTGCTCCACTGCATCTGATGCTATTATATCACATTCAGTTGTGGAAAATCGAGTACTTTTTCAAACTTCCTGGGAAATGATCCGTCCTGCTGCACACTCATTGTCACATGAAAGCACAAAATGATGATTACCTATGATGTGTGTGATTGTTGGCCTTCTGTGCTGCCTAACTATGAGTTAAATCTACTGTCGAGGTA-------AAAAAAAAAAAAAAAAAAA]
[+] EMBL AK061712 [CCTCGCTTCAATTCTAATCCCCCCCAAACCCCCTCCAAACCCTAACCCTACTACGACCTCCCCTTCCTCCGCCGCCGCCGCCACCGCCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCGATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGACATCTGTGAGAAGGGCGATTCTTACATAAGAGAGCAAAC TGGCAACATCTACAAGAATGTGAAGAGGAAGATTGAAAGAGGTGTTGCTTTTCCAACATGTGTATCTGTGAACAACACAGTC TGCCATTTCTC TCCGCTAGCCACT GATG AGGCAGTCC TGGAGGAAAATGATATGGTCAAAATTGATATGGGATGTCATATTGATGGTTTTATTGCCGTGGTGGCTCATACACATGTTATCCATGATGGAGCAGTCACTGGGAAAGCAGCAGATGTTCTTGCTGCTGCCAACACAGCGG CAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCAAAATTGTGGAAGGAGTTCTCAGCCATCAGCTGAAACAGTTTGTCATTGAC GGTAACAAAGTTGTACTTAGTGTG TCCAATGCTGATACGAAGGTGGATGATGCTGAATTTGAGGAAAATGAAGTGTATG CAATTGATATTGTCACCAGCACTGGAGAAGGGAAGCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACAAGAATTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAGATAAGCCAGAAGTTTCCTATCATGCCCTTCACTGCTAGGGCATTGGAAGAGAAGCGTGCACGCTTAGGTTTGGTGGAATGCATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATGGCTTGCTTTGGGGACAAAAACAAAGAAGAAAAGTGGTGCAAAAAAGAAGAAAGGTAAGAAAGGAGATGCAGCAGAAGCAGTGCCTATGGAGGAGGGTTCAAATGATGCAAACAAAGAATAACTGATTGTTCTTTTGAATTGCTTCCGTTAGTTTTGTACTTGCTCCACTGCATCTGATGCTATTATATCACATTCAGTTGTGGAAAATCGA ]
[+] EMBL AK102897 [ TCGCTTCAATTCTAATCCCCCCCAAACCCCCTCCAAACCCTAACCCTACTACGACCTCCCCTTCCTCCGCCGCCGCCGCCACCGCCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCGATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGACATCTGTGAGAAGGGCGATTCTTACATAAGAGAGCAAAC TGGCAACATCTACAAGAATGTGAAGAGGAAGATTGAAAGAGGTGTTGCTTTTCCAACATGTGTATCTGTGAACAACACAGTC TGCCATTTCTC TCCGCTAGCCACT GATG AGGCAGTCC TGGAGGAAAATGATATGGTCAAAATTGATATGGGATGTCATATTGATGGTTTTATTGCCGTGGTGGCTCATACACATGTTATCCATGATGGAGCAGTCACTGGGAAAGCAGCAGATGTTCTTGCTGCTGCCAACACAGCGG CAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCAAAATTGTGGAAGGAGTTCTCAGCCATCAGCTGAAACAGTTTGTCATTGAC GGTAACAAAGTTGTACTTAGTGTG TCCAATGCTGATACGAAGGTGGATGATGCTGAATTTGAGGAAAATGAAGTGTATG CAATTGATATTGTCACCAGCACTGGAGAAGGGAAGCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACAAGAATTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAGATAAGCCAGAAGTTTCCTATCATGCCCTTCACTGCTAGGGCATTGGAAGAGAAGCGTGCACGCTTAGGTTTGGTGGAATGCATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATGGCTTGCTTTGGGGACAAAAACAAAGAAGAAAAGTGGTGCAAAAAAGAAGAAAGGTAAGAAAGGAGATGCAGCAGAAGCAGTGCCTATGGAGGAGGGTTCAAATGATGCAAACAAAGAATAACTGATTGTTCTTTTGAATTGCTTCCGTTAGTTTTGTACTTGCTCCACTGCATCTGATGCTATTATATCACATTCAGTTGTGGAAAATCGAGTACTTTTTCAAACTTCCTGGGAAATGATCCGTCCTGCTGCACACTCATTGTCACATGAAAGCACAAAATGATGATTACCTATGATGTGTGTGATTGTTGGCCTT ]
[+] EMBL AU082298 [ CCCAAACCCCCTCCAAACCCTAACCCTACTACGACCTCCCCTTCCTCCGCCGCCGCCGCCACCGCCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCGATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGACATCTGTGAGAAGGGCGATTCTTACATAAGAGAGCAAAC TGGCAACATCTACCAGAATGTGAAGAGGAAGAATGAAAGAAGTGTTGCTTTTTCAACATGTGNATCTGTG ACAACACAGTC TGGCA TTCTC ]
[+] EMBL AF020787 [ ACCTCCCCTTCCTCCGCCGCCGCCGCCACCGCCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCGATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGACATCTGTGAGAAGGGCGATTCTTACATAAGAGAGCAAAC TGGCAACATCTACAAGAATGTGAAGAGGAAGATTGAAAGAGGTGTTGCTTTTCCAACATGTGTNTCTGTGAACAACACAGTC TGCCATTTCTC TCCGCTAGCCACT GATG AGGCAGTCC TGGAGGAAAATGATATGGTCAAAATTGATATGGGATGTCATATTGATGGTTTTATTGCCGTGGTGGCTCATACACATGTTATCCATGATGGAGCAGTCACTGGGAAAGCAGCAGATGTTCTTGCTGCTGCCAACACAGCGG CAGAAGTTGCTCTGAGGTTTGTTAGACCTGGGAAGAAGAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCCTATGACTCCGTATCTGTTGAAGGAGTTCTCAGCCATCAGCTGAAACAGTTTGTCATTGAC GGTAACAAAGTTGTACTTAGTGTG TCCAATGCTGATACGAAGGTGGATGATGCTGAATTTGAGGAAAATGAAGTGTATG CAATTGATATTGTCACCAGCACTGGAGAAGGGAAGCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACAAGAATTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAGATAAGCCAGAAGTTTCCTATCATGCCCTTCACTGCTAGGGCATTGGAAGAGAAGCGTGCACGCTTAGGTTTGGTGGAATGCATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCGCATTCACTTCAGGTGTTGCAGCCCACTAAATCCATTGAAGACCACGCTGAGATCAAGGCATGGCTTGCTTTGGGGACCAAAACAAAGAAGAAAAGTGGTGCCCAAAAGAAGAAAGGTAAGAAAGGAGATGCAGCAGAAGCAGTGCCTATGGAGGAGGGTTCAAATGATGCAAACAAAGAATAACTGATTGTTCTTTTGAATTGCTTCCGTTAGTTTTGTACTTGCTCCACTGCATCTGATGCTATTATATCACATTCAGTTGTGGAAAATCGAGTACTTTTTCAAACTTCCTGGGAAATGATCCGTCCTGCTGCACACTCATT ]
[+] EMBL AU165846 [ CCTTCCTCCGCCGCCGCCGCCACCGCCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCGATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACNTCTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAATGCTCTTAAGTTGGTAGTGTCTTTGTGCAANCCGAAAGCCAAGATTNTNGACATCTGTGAGAAGGGCGATTCTTACATAAGAGAGCAAACNCGGCAACATCTACAAGAATGTGAAGAGGAAGATTGAAAGAGGTGTTGCTTTTCCAACATGTGTATCTGTGAACAACACAGTCTTGCCATTTCTCNTCCGCTAGCCACTGGATGAAGGCAGTCCTTGGAGGAAAAT ]
[+] EMBL AU082306 [ CTCCGCCGCCGCCGCCACCGCCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGNTCGAAGCGATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTCCGACGTCGTCACCAAGTACANGGACGCCGCCGATATCATCANCANTGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGACATCTGTAAGAAGGGCGATTCTTACATAAGNGAGCAGNC TGGC ]
[+] EMBL AU082299 [ CAGATGTTCTTGCTGCTGCCAACACAGCGGCCAGAAGTTGCTTTGAGGCTTGTTAGACCT GGAAGAAGACCAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCAAAATTGTGGAA GAGTTCTCAGCCATCAGCTGAAACAGTTTGTCATTGACGGGTACCAAAGTTGTACTTAGTGTG TCCAATGCTGATACGAAGGTGGATGATGCTGAATTTGAGGAAAATGAAGTGTATG CAATTGATATTGTCACCAGCACTGGAGAAGGGAAGCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGNCAAGAATTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAGATAAGCCAGAAGTTTCCTATCATGCCCTTCACTGCTAGGGCATTGGAAGAGAAGCGTGCACGCTTAGGTTTGGTGGAATGCATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATGGCTTGCTTTGGGGACAAAAACAAAGAAGAAAAGTGGTGCAAAAA ]
[+] EMBL AU181604 [ CTTGCTGCTGCCAACACAGCGG CAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCAAAATTGTGGAAGGAGTTCTCAGCCATCAGCTGAAACAGTTTGTCATTGAC GGTAACAAAGTTGTACTTAGTGTG TCCAATGCTGATACGAAGGTGGATGATGCTGAATTTGAGGAAAATGAAGTGTATG CAATTGATATTGTCACCAGCACTGGAGAAGGGAAGCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACAAGAATTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAGATAAGCCAGAAGTTTCCTATCATGCCCTTCACTGCTAGGGCATTGGAAGAGAA ]
[+] EMBL CF322559 [ CAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCAAAATTGTGGAAGGAGTTCTCAGCCATCAGCTGAAACAGTTTGTCATTGAC GGTAACAAAGTTGTACTTAGTGTG TCCAATGCTGATACGAAGGTGGATGATGCTGAATTTGAGGAAAATGAAGTGTATG CAATTGATATTGTCACCAGCACTGGAGAAGGGAAGCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACAAGAATTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAGATAAGCCAGAAGTTTCCTATCATGCCCTTCACTGCTAGGGCATTGGAAGAGAAGCGTGCACGCTTAGGTTTGGTGGAATGCATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCG ]
[+] EMBL AU093805 [ AGTTGTNCTTAGTGTGNCCCAATGCTGATACGAAGGTGGNTGATGCTGAATTTGAGGAAAATGAAGTGTATGCCAATTGATATTGTCACCAGCANTGGAGAAGGGAAGCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACAAGAATTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAGATAAGCCAGAAGTTTCCTATCATGCCCTTCACTGCTAGGGCATTGGAAGAGAAGCGTGCACGCTTAGGTTTGGTGGAATGCATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATGGCTTGCTTTGGGGACAAAAACAAAGAAGAAAAGTGGTGCAAAAA ]
[+] EMBL AU057638 [ CCTATCATGCCCTTCACTGCTAGGGCATTGGAAGAGAAGCGTGCACGCTTAGGTTTGGTGGAATGCATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATGGCTTGCTTTGGGGACAAAAACAAAGAAGAAAAGTGGTGCAAAAA ]
[+] EMBL C27014 [ TGCTAGGGCATTGGAAGAGAAGCGTGCAC NTTAGGTTTGGTGGAATGCATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATGGCTTGCTTTGGGGACAAAAACAAAGAAGAAAAGTGGTGCAAAAAAGAAGAAAGGTAAGAAAGGAGATGCAGCAGAAGCAGTTCCTATGGAGGAGGGTTCAAATGATGCAAACAAAGAATAACTGATTGTTCTTTTGAATTGCTTCCGTTAGTTTTGTAC TNCTCCACTGCATCTGATGCTATTATATCACATTCAGTTGTGGGAAATCGAGTAC ]
[+] EMBL CA305666 [ TCACGAGAAGCCAGGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATGGCTTGCTTTGGGGACAAAAACAAAGAAGAAAAGTGGTGGAAAAAAGAAGAAAGGTAAGAAAGGAGATGCAGCAGAAGCAGTGCCTATGGAGGAGGGTTCAAATGATGCAAACAAAGAATAACTGATTGTTCTTTTGAA ]
[+] EMBL AU181605 [ CGCATTCACTTCAGGAGTTGCAGCCCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATGGCTTGCTTTGGGGACAAAAACAAAGAAGAAAAGTGGTGCAAAAAAGAAGAAAGGTAAGAAAGGAGATGCAGCAGAAGCAGTGCCTATGGAGGAGGGTTCAAATGATGCAAACAAAGAATAACTGATTGTTCTTTTGAATTGCTTCCGTTAGTTTTGTACTTGCTCCNCTGCATCTGATGCTATTATATCACATTCAGTTGTGGAAAATCGAGTACTTTTTCAAACTTCCTGGGAAATGATCCGTCCTGCTGCACACTCATTGTCACATGAAAGCACAAAATGATGATTACCTATGATGTGTGTGATTGTTGGCCTTCTGTGCTGCCTAACTATGAGTTAAATCTACTGTCGAGGTA AAAAAAAAAAAAAA ]
[+] EMBL AU181595 [ GCAAAAAAGAAGAAAGGTAAGAAAGGAGATGCAGCAGAAGCAGTGCCTATGGAGGAGGGTTCAAATNATGCAAACAAAGAATAACTGATTGTTNTTTTGAATTGCTTCCGTTAGTTTTGNACTTGCTCCNCTGCATCTGATGCTATTATATCACATTCAGTTGTGGAAAATCGAGTACTTTTTCAAACTTCCTGGGAAATGATCCGTCCTGCTGCACACTCATTGTCACATGAAAGCNCAAAATGATGATTACCTATNATGTGTGTGATTGTTGGCCTTNTGTGCTGCCTAACTATGAGTTAAATCTACTGTCGAGGTATGGTGCGAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14978#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 932 fasta sequence
[CGCCGTCACCGTCACCGTCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCGATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGACATCTGTGAGAAGGGTGATTCTTACATAAGAGAGCAAACTGGCAACATCTACAAGAATGTGAAGAGGAAGATTGAAAGAGGTGTTGCTTTTCCAACATGTGTATCTGTGAACAACACAGTCTGCCATTTCTCTCCGCTAGCCACTGATGAGGCAGTCCTGGAGGAAAATGATATGGTCAAAATTGATATGGGATGTCATATTGATGGTTTTATTGCCCGGGTGGCTCATACACATGTTATCCATGATGGAGCAGTCACTGGGAAAGCAGCAGATGTTCTTGCTGCTGCCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGAACAAGGATGTAACCGAAGCGATTCAGAAAGTTGCTGTTGATTATGACTGCAAAATTGTGGAAGGAGTTCTTAGCCATAAGCTGAAACAAGTTGCCATTGACGGGTACAAAGTTGTTCTTAGTGTGTCCAATGCTGTTACCAAGGAGGATGATGCTTGATTCGAGGAAATGAATGTATGCAATGAAATTGTTACCAGCCCTGGAAAGGGGAACCCAGGTATTGGTGGAATAACGAACACTCTCTTTCAAAGTACGTTGACAGGATTTTTCCTCGAGATGAAAGAAATTAGGTCATTCTTATGGGTGATAAACACAAGTTTTCTATTTGGCCCTTCCTTGTAAGGGATTTGGAGGAAAGCGGCCCCCTTTGGTGTTGGGCGATGTA]
[+] EMBL BE039965 [CGCCGTCACCGTCACCGTCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCGATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGACATCTGTGAGAAGGGTGATTCTTACATAAGAGAGCAAACTGGCAACATCTACAAGAATGTGAAGAGGAAGATTGAAAGAGGTGTTGCTTTTCCAACATGTGTATCTGTGAACAACACAGTCTGCCATTTCTCTCCGCTAGCCACTGATGAGGCAGTCCTGGAGGAAAATGATATGGTCAAAATTGATATGGGATGTCATATTGATGGTTTTATTGCCCGGGTGGCTCATACACATGTTATCCATGATGGAGCAGTCACTGGGAAAGCAGCAGATGTTCTTGCTGCTGCCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGAACAAGGATGTAACCGAAGCGATTCAGAAAGTTGCTGTTGATTATGACTGCAAAATTGTGGAAGGAGTTCTTAGCCATAAGCTGAAACAAGTTGCCATTGACGGGTACAAAGTTGTTCTTAGTGTGTCCAATGCTGTTACCAAGGAGGATGATGCTTGATTCGAGGAAATGAATGTATGCAATGAAATTGTTACCAGCCCTGGAAAGGGGAACCCAGGTATTGGTGGAATAACGAACACTCTCTTTCAAAGTACGTTGACAGGATTTTTCCTCGAGATGAAAGAAATTAGGTCATTCTTATGGGTGATAAACACAAGTTTTCTATTTGGCCCTTCCTTGTAAGGGATTTGGAGGAAAGCGGCCCCCTTTGGTGTTGGGCGATGTA]
consensusID : consensus_14978#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence
[AGCTGAATTTGAGGAAATGAATGTATGCAATTGATATTGTCACCAGCACTGGAGAANGGAACCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACAAGAATTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAGATAAGCCAGAANTTTCCTATCATGCCCTTCACTGCTAGGGCATTGGAANAGAAACGTGCACGCTTAGGTTTGGTGGAATGCATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTNNCATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATCCNTTGAAGACAACGCTNAGATCNANGCATGGCTTGCTTTGGGGACAAAAACNAAGAAAAAAAGTGGTGGAAAAAANAAAAAAGGTTNGAAAGGAGATGCCCNCAAACCTGCCTATGGANGAAGGTTCCCATGATGCCNACCNANAATAACTGATTGTTCTTTTGAATTGCTTCCNTTAGTTTTGTTCTTGCTCCCCTGCNTCTGATGCTATTATNTCCCCTTCCNTTGTGGAAAATCCAGT]
[+] EMBL BE229675 [AGCTGAATTTGAGGAAATGAATGTATGCAATTGATATTGTCACCAGCACTGGAGAANGGAACCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACAAGAATTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAGATAAGCCAGAANTTTCCTATCATGCCCTTCACTGCTAGGGCATTGGAANAGAAACGTGCACGCTTAGGTTTGGTGGAATGCATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTNNCATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATCCNTTGAAGACAACGCTNAGATCNANGCATGGCTTGCTTTGGGGACAAAAACNAAGAAAAAAAGTGGTGGAAAAAANAAAAAAGGTTNGAAAGGAGATGCCCNCAAACCTGCCTATGGANGAAGGTTCCCATGATGCCNACCNANAATAACTGATTGTTCTTTTGAATTGCTTCCNTTAGTTTTGTTCTTGCTCCCCTGCNTCTGATGCTATTATNTCCCCTTCCNTTGTGGAAAATCCAGT]
consensusID : consensus_14978#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence
[TGNGCTTCTGCTGCCATCTGGTTCNCAAAGGGTAACATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATGGCTTGCTTTGGGGACAAAAACAAAGAAGAAAAGTGGNGCAAAAAAGAAGAAAGGTAAGAAAGGAGATGCAGCAGAAGCAGTGCCTATGGAGGAGGGTTCAAATGATGCAAACAAAGAATAACTGATTGTTCTTTTGAATTGCTTCCGTTAGTTTTGNACNTGCTCCNCTGCATCTGATGCTATTATATCACATTCAGTTGTGGAAAATCGAGNACTTTTTCAAACTTCCTGGGAAATGATCCGTCCNNNNGCNCACNCANTGTCACATGAAAGCNCAAAATNATGATNNCCTATGNAAAAAAAAAA]
[+] EMBL AU183875 [TGNGCTTCTGCTGCCATCTGGTTCNCAAAGGGTAACATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATGGCTTGCTTTGGGGACAAAAACAAAGAAGAAAAGTGGNGCAAAAAAGAAGAAAGGTAAGAAAGGAGATGCAGCAGAAGCAGTGCCTATGGAGGAGGGTTCAAATGATGCAAACAAAGAATAACTGATTGTTCTTTTGAATTGCTTCCGTTAGTTTTGNACNTGCTCCNCTGCATCTGATGCTATTATATCACATTCAGTTGTGGAAAATCGAGNACTTTTTCAAACTTCCTGGGAAATGATCCGTCCNNNNGCNCACNCANTGTCACATGAAAGCNCAAAATNATGATNNCCTATGNAAAAAAAAAA]
consensusID : consensus_14978#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence
[AGTGTTCAAATGATGCAAACAAAGAATAACTGATTGTTCTTTTGAATTGCTTCCGTTAGTTTTGTACTTGCTCCACTGCATCTGATGCTATTATATCACATTCAGTTGTGGAAAATCGAGTACTTTTTCAAACTTCCTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTT]
[+] EMBL CF321646 [AGTGTTCAAATGATGCAAACAAAGAATAACTGATTGTTCTTTTGAATTGCTTCCGTTAGTTTTGTACTTGCTCCACTGCATCTGATGCTATTATATCACATTCAGTTGTGGAAAATCGAGTACTTTTTCAAACTTCCTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 CCTCGCTTCAATTCTAATCCCCCCCAAACCCCCTCCAAACCCTAACCCTACTACGACCTC 60
consensus_14978#1 ------------------------------------------------------------
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 CCCTTCCTCCGCCGCCGCCGCCACCGCCACCGCCACCGCCACGTCCAGCCTCCGGTCGCC 120
consensus_14978#1 ------------------------------------------------------------
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 TGTTCGGATCGAAGCGATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCT 180
consensus_14978#1 ------------------------------------------------------------
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 CTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAATGCTCT 240
consensus_14978#1 ------------------------------------------------------------
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 TAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGACATCTGTGAGAAGGG 300
consensus_14978#1 ------------------------------------------------------------
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 CGATTCTTACATAAGAGAGCAAACTGGCAACATCTACAAGAATGTGAAGAGGAAGATTGA 360
consensus_14978#1 ------------------------------------------------------------
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 AAGAGGTGTTGCTTTTCCAACATGTGTATCTGTGAACAACACAGTCTGCCATTTCTCTCC 420
consensus_14978#1 ------------------------------------------------------------
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 GCTAGCCACTGATGAGGCAGTCCTGGAGGAAAATGATATGGTCAAAATTGATATGGGATG 480
consensus_14978#1 ------------------------------------------------------------
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 TCATATTGATGGTTTTATTGCCGTGGTGGCTCATACACATGTTATCCATGATGGAGCAGT 540
consensus_14978#1 ------------------------------------------------------------
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 CACTGGGAAAGCAGCAGATGTTCTTGCTGCTGCCAACACAGCGGCAGAAGTTGCTCTGAG 600
consensus_14978#1 ------------------------------------------------------------
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 GCTTGTTAGACCTGGGAAGAAGAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGC 660
consensus_14978#1 ------------------------------------------------------------
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 TGCTTATGACTGCAAAATTGTGGAAGGAGTTCTCAGCCATCAGCTGAAACAGTTTGTCAT 720
consensus_14978#1 ------CGCCGTCACCGTCACCGTCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGAT 54
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ------------------------------------------------------AGCTGA 6
consensus_14978#0 TGACGGTAACAAAGTTGTACTTAGTGTGTCCAATGCTGATACGAAGGTGGATGATGCTGA 780
consensus_14978#1 CGAAGCGATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTC 114
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ATTTGAGGAAAT--GAATGTATGCAATTGATATTGTCACCAGCACTGGAGAANGGAA-CC 63
consensus_14978#0 ATTTGAGGAAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAGCC 840
consensus_14978#1 CGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAATGCTCTTAAGTTGGT 174
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 CAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACAAGAATTATCA 123
consensus_14978#0 CAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACAAGAATTATCA 900
consensus_14978#1 AGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGACATCTGTGAGAAGGGTGATTCTTA 234
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 CTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAGATAAGCCAGAANTTTCCTATCAT 183
consensus_14978#0 CTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAGATAAGCCAGAAGTTTCCTATCAT 960
consensus_14978#1 CATAAGAGAGCAAACTGGCAACATCTACAAGAATGTGAAGAGGAAGATTGAAAGAGGTGT 294
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 GCCCTTCACTGCTAGGGCATTGGAANAGAAACGTGCACGCTTAGGTTTGGTGGAATGCAT 243
consensus_14978#0 GCCCTTCACTGCTAGGGCATTGGAAGAGAAGCGTGCACGCTTAGGTTTGGTGGAATGCAT 1020
consensus_14978#1 TGCTTTTCCAACATGTGTATCTGTGAACAACACAGTCTGCCATTTCTCTCCGCTAGCCAC 354
consensus_14978#3 ------------------------------------------------------------
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 GAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGGCGACCTTGTTGC 303
consensus_14978#0 GAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGGCGACCTTGTTGC 1080
consensus_14978#1 TGATGAGGCAGTCCTGGAGGAAAATGATATGGTCAAAATTGATATGGGATGTCATATTGA 414
consensus_14978#3 ---------------TGNGCTTCTGCTGCCATCTGGTTCNCAAAGGGTAA-CATCGCATT 44
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 ACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTNN-CATCGCATT 362
consensus_14978#0 ACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAA-CATCGCATT 1139
consensus_14978#1 TGGTTTTATTGCCCGGGTGGCTCATACACATGTTATCCATGATGGAGCAGTCACTGGGAA 474
consensus_14978#3 CACTTCAGGAGTTGCAGC--CCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATG 102
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 CACTTCAGGAGTTGCAGC--CCACTAAATCCNTTGAAGACAACGCTNAGATCNANGCATG 420
consensus_14978#0 CACTTCAGGAGTTGCAGC--CCACTAAATCCATTGAAGACAACGCTGAGATCAAGGCATG 1197
consensus_14978#1 AGCAGCAGATGTTCTTGCTGCTGCCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAG 534
consensus_14978#3 GCTTGCTTTGGGGACAAAAACAAAGAAGAAAAGTGGNGCAAAAAAGAAGAAAGGTAAGAA 162
consensus_14978#4 ------------------------------------------------------------
consensus_14978#2 GCTTGCTTTGGGGACAAAAACNAAGAAAAAAAGTGGTGGAAAAAANAAAAAAGGTTNGAA 480
consensus_14978#0 GCTTGCTTTGGGGACAAAAACAAAGAAGAAAAGTGGTGCAAAAAAGAAGAAAGGTAAGAA 1257
consensus_14978#1 ACCTGGGAAGAAGAACAAGGATGTAACCGAAGCGATTCAGAAAGTTGCTGTTGATTATGA 594
consensus_14978#3 AGGAGATGCAGCAGAAGCAGTGCCTATGGAGGAGGGTTCAAATGATGCAAACAAAGAATA 222
consensus_14978#4 --------------------------------AGTGTTCAAATGATGCAAACAAAGAATA 28
consensus_14978#2 AGGAGATGCCCNCAAACC--TGCCTATGGANGAAGGTTCCCATGATGCCNACCNANAATA 538
consensus_14978#0 AGGAGATGCAGCAGAAGCAGTGCCTATGGAGGAGGGTTCAAATGATGCAAACAAAGAATA 1317
consensus_14978#1 CTGCAAAATTGTGGAAGGAGTTCTTAGCCATAAGCTGAAACAAGTTGCCATTGACGGGTA 654
* * * *** **
consensus_14978#3 ACTGATTGTTCTT------TTGAAT--TGCTTCCGTT-AGTTTTGNACNTGCTCCNCTGC 273
consensus_14978#4 ACTGATTGTTCTT------TTGAAT--TGCTTCCGTT-AGTTTTGTACTTGCTCCACTGC 79
consensus_14978#2 ACTGATTGTTCTT------TTGAAT--TGCTTCCNTT-AGTTTTGTTCTTGCTCCCCTGC 589
consensus_14978#0 ACTGATTGTTCTT------TTGAAT--TGCTTCCGTT-AGTTTTGTACTTGCTCCACTGC 1368
consensus_14978#1 CAAAGTTGTTCTTAGTGTGTCCAATGCTGTTACCAAGGAGGATGATGCTTGATTCGAGGA 714
******** * *** ** * ** ** * * ** * * *
consensus_14978#3 ATCTGATG----CTATTATATCACATTCAGTTGTGGAAAATCGAGNACTTTTTCAAACTT 329
consensus_14978#4 ATCTGATG----CTATTATATCACATTCAGTTGTGGAAAATCGAGTACTTTTTCAAACTT 135
consensus_14978#2 NTCTGATG----CTATTATNTCCCCTTCCNTTGTGGAAAATCCAGT-------------- 631
consensus_14978#0 ATCTGATG----CTATTATATCACATTCAGTTGTGGAAAATCGAGTACTTTTTCAAACTT 1424
consensus_14978#1 AATGAATGTATGCAATGAAATTGTTACCAGCCCTGGAAAGGGGAACCCAGGTATTGGTGG 774
*** * ** * * * ****** *
consensus_14978#3 CCTGGGAAATGATCCGTCCNNNNGCNCACNCANTGTCACATGAAAGCNCAAAATNATGAT 389
consensus_14978#4 CCTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 195
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 CCTGGGAAATGATCCGTCCTGCTGCACACTCATTGTCACATGAAAGCACAAAATGATGAT 1484
consensus_14978#1 AATAACGAACACTCTCTTTCAAAGTACGTTGACAGGATTTTTCCTCGAGATGAAAGAAAT 834
consensus_14978#3 NNCCTATGNAAAAAAAAAA----------------------------------------- 408
consensus_14978#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 255
consensus_14978#2 ------------------------------------------------------------
consensus_14978#0 TACCTATGATGTGTGTGATTGTTGGCCTTCTGTGCTGCCTAACTATGAGTTAAATCTACT 1544
consensus_14978#1 TAGGTCATTCTTATGGGTGATAAACACAAGTTTTCTATTTGGCCCTTCCTTGTAAGGGAT 894
consensus_14978#3 --------------------------------------
consensus_14978#4 AAAAAAAAAAAAAAACCCCTTT---------------- 277
consensus_14978#2 --------------------------------------
consensus_14978#0 GTCGAGGTAAAAAAAAAAAAAAAAAAAA---------- 1572
consensus_14978#1 TTGGAGGAAAGCGGCCCCCTTTGGTGTTGGGCGATGTA 932
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||