These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1062 fasta sequence [TATACAGAAAGCAAATTAATTAAGCATCCAAAATGGCTTCCTCCCC-AAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAG-GCCAAGCCCGGCACCGACGGGGCCCCTCAACCTGACGGAGATCCTGACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGGCGACGGGCTGACGGTGCTGGCGCCGACGGACGCCGCGTTCGGGCGGCTCCGGCCGG-GGACGCTCAACCAGATGGACGCGCAGGCGCAGGCGGAGCT-GGTGCTGTACCACGTCCTCCCCAGGTAC-TAC-GGCTTCGTCACGTTCGAGACCACCACCAACCCGGTGCGCACCCAGGCCTCCGGCCAGCGCGGCGTCTGCACCGTCAACGTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGGCCGAGCTCGGGAGGCCGCTCCGCGACGGCCACCCGCTCGCCGTGTACTCGCTCGACGCCGTCCTCCTCCCGCCCGACATGTTCGGCCCCGGCGCCAAGAAGGACTACGGCGCCGCCGACGCGCCCGCGGCGGCGGGGAAGCACGGGAAGCCGCAGACCGCGTCGTCGTCGTCGGTGGCGGCGGCGCCTGACGAAGCGCCGTCGAAGGAGGTGGACGCCACGGCGACGGCGGCCGCCGGCAGGATGGCGCCGGCGGGATGGGCGGCGGCGTTTGCAGGGGTCGTGACCGCGGTGGTCGCCGTGAGCCTGCTCTCGTATTGATGAGCAGGCATGCATGCGATGCAGGCGATGCACATATCGTTAATTTACATTGGGTTTTTGCTCGATATATGCTACGCACAAGCACGCTCCATTTCGCTCTGTTAATATGTTGTGTACAAACAACATTGCATTTTGTTTATCAGATGTATACCTTGTGAATGCATGTTTTACATTCCAAGTTACTGCACCGATGTAGTTTTATAATTTACATATACGCTCAACTT] [+] EMBL AK104533 [TATACAGAAAGCAAATTAATTAAGCATCCAAAATGGCTTCCTCCCC AAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAGCGCCAAGCCCGGCACCGACGGGGCCCCTCAACCTGACGGAGATCCTGACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGGCGACGGGCTGACGGTGCTGGCGCCGACGGACGCCGCGTTCGGGCGGCTCCGGCCGG GGACGCTCAACCAGATGGACGCGCAGGCGCAGGCGGAGCT GGTGCTGTACCACGTCCTCCCCAGGTAC TAC GGCTTCGTCACGTTCGAGACCACCACCAACCCGGTGCGCACCCAGGCCTCCGGCCAGCGCGGCGTCTGCACCGTCAACGTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGGCCGAGCTCGGGAGGCCGCTCCGCGACGGCCACCCGCTCGCCGTGTACTCGCTCGACGCCGTCCTCCTCCCGCCCGACATGTTCGGCCCCGGCGCCAAGAAGGACTACGGCGCCGCCGACGCGCCCGCGGCGGCGGGGAAGCACGGGAAGCCGCAGACCGCGTCGTCGTCGTCGGTGGCGGCGGCGCCTGACGAAGCGCCGTCGAAGGAGGTGGACGCCACGGCGACGGCGGCCGCCGGCAGGATGGCGCCGGCGGGATGGGCGGCGGCGTTTGCAGGGGTCGTGACCGCGGTGGTCGCCGTGAGCCTGCTCTCGTATTGATGAGCAGGCATGCATGCGATGCAGGCGATGCACATATCGTTAATTTACATTGGGTTTTTGCTCGATATATGCTACGCACAAGCACGCTCCATTTCGCTCTGTTAATATGTTGTGTACAAACAACATTGCATTTTGTTTATCAGATGTATACCTTGTGAATGCATGTTTTACATTCCAAGTTACTGCACCGATGTAGTTTTATAATTTACATATACGCTCAAC ] [+] EMBL AK060903 [TATACAGAAAGCAAATTAATTAAGCATCCAAAATGGCTTCCTCCCC AAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAGCGCCAAGCCCGGCACCGACGGGGCCCCTCAACCTGACGGAGATCCTGACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGGCGACGGGCTGACGGTGCTGGCGCCGACGGACGCCGCGTTCGGGCGGCTCCGGCCGG GGACGCTCAACCAGATGGACGCGCAGGCGCAGGCGGAGCT GGTGCTGTACCACGTCCTCCCCAGGTAC TAC GGCTTCGTCACGTTCGAGACCACCACCAACCCGGTGCGCACCCAGGCCTCCGGCCAGCGCGGCGTCTGCACCGTCAACGTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGGCCGAGCTCGGGAGGCCGCTCCGCGACGGCCACCCGCTCGCCGTGTACTCGCTCGACGCCGTCCTCCTCCCGCCCGACATGTTCGGCCCCGGCGCCAAGAAGGACTACGGCGCCGCCGACGCGCCCGCGGCGGCGGGGAAGCACGGGAAGCCGCAGACCGCGTCGTCGTCGTCGGTGGCGGCGGCGCCTGACGAAGCGCCGTCGAAGGAGGTGGACGCCACGGCGACGGCGGCCGCCGGCAGGATGGCGCCGGCGGGATGGGCGGCGGCGTTTGCAGGGGTCGTGACCGCGGTGGTCGCCGTGAGCCTGCTCTCGTATTGATGAGCAGGCATGCATGCGATGCAGGCGATGCACATATCGTTAATTTACATTGGGTTTTTGCTCGATATATGCTACGCACAAGCACGCTCCATTTCGCTCTGTTAATATGTTGTGTACAAACAACATTGCATTTTGTTTATCAGATGTATACCTTGTGAATGCATGTTTTACATTCCAAGTTACTGCACCGATGTAGTTTTATAATTTACATATACGCTCAAC ] [+] EMBL AK104098 [ ACAGAAAGCAAATTAATTAAGCATCCAAAATGGCTTCCTCCCC AAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAGCGCCAAGCCCGGCACCGACGGGGCCCCTCAACCTGACGGAGATCCTGACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGGCGACGGGCTGACGGTGCTGGCGCCGACGGACGCCGCGTTCGGGCGGCTCCGGCCGG GGACGCTCAACCAGATGGACGCGCAGGCGCAGGCGGAGCT GGTGCTGTACCACGTCCTCCCCAGGTAC TAC GGCTTCGTCACGTTCGAGACCACCACCAACCCGGTGCGCACCCAGGCCTCCGGCCAGCGCGGCGTCTGCACCGTCAACGTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGGCCGAGCTCGGGAGGCCGCTCCGCGACGGCCACCCGCTCGCCGTGTACTCGCTCGACGCCGTCCTCCTCCCGCCCGACATGTTCGGCCCCGGCGCCAAGAAGGACTACGGCGCCGCCGACGCGCCCGCGGCGGCGGGGAAGCACGGGAAGCCGCAGACCGCGTCGTCGTCGTCGGTGGCGGCGGCGCCTGACGAAGCGCCGTCGAAGGAGGTGGACGCCACGGCGACGGCGGCCGCCGGCAGGATGGCGCCGGCGGGATGGGCGGCGGCGTTTGCAGGGGTCGTGACCGCGGTGGTCGCCGTGAGCCTGCTCTCGTATTGATGAGCAGGCATGCATGCGATGCAGGCGATGCACATATCGTTAATTTACATTGGGTTTTTGCTCGATATATGCTACGCACAAGCACGCTCCATTTCGCTCTGTTAATATGTTGTGTACAAACAACATTGCATTTTGTTTATCAGATGTATACCTTGTGAATGCATGTTTTACATTCCAAGTTACTGCACCGATGTAGTTTTATAATTTACATATACGCTCAACTT] [+] EMBL BE229551 [cgagCAGAAAGCAAATTAATTAAGCATCCAAAATSGCTTCCTCCCCAAAGCACAGTATTTCTWGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCRGCGCCGGCGAAG GCCAAGCCCGGCACCGACGGGGCCCCTCAACCTGACGGAGATSCTGACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGGCGACGGGCTGACGGTGCTGGMGACGACGGACGCCGCGTTCGGGCGGCTCCGGCCGG GGACGGTCAACCAGATGGACGCGCAGGCGCAGGCGGASTB GGTGCTGTACCACGTCCTCCCCAGGTAC TAC GGCTTCGTCACGTTCGAGACCAMCACCAACCCRGTG GGA CCAGGC ] [+] EMBL OSS15388A [ CAAATTAATTAAGCATCCAAAATGGCTTCCTCCCC AAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAG GCCAAGCCCGGCACCNACGGGGCCCCTCAACCTGACGGAGATCCTNACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGGCGACGGGCTGACGGTGCTGGCGNCGACGGACGCNGCGTTCGGGCGGCTCCG ] [+] EMBL OSC8041 [ AATTAATTAAGCATCCAAAATGGCTTCCTCCCC AAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAG GCCAAGCCCGGCACCGACGGGGCCCCTCAACCTGACGGAGATCCTGACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGTAAC GCGACGNNCTGACGGTGCTGNCGACGACGGACGTCGNGTTCG ] [+] EMBL OSS15584A [ ATTAATTAAGCATCCAAAATGGCTTCCTCCCC AAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAG GCCAAGCCCGGCACCGACGGGGCCCCTCAACCTGACGGAGATCCTGACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGGCGACGGGCTGACGGTGCTGGCGCCGACGGACGCCGCGTTCGGGCGGCTCCGGCCGG GGACGCTCAACCAGATGGACGCGCAGGCGCAGGCGGAGCTGGGTGCTGTACCANGTCCTCCCCAGGTAC TACGGGCTTCGTCAAGTTCGAGACC ] [+] EMBL OSS15413A [ TTAAGCATCCAAAATGGCTTCCTCCCC AAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAG GCCAAGCCCGGCACCGACGGGGCCCCTCAACCTGACGGAGATCCTGACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGTCGACGGGCTGACGGTGCTGGCGTCGACGNACGCNGCGTTCGGGCGGNTCCGGCCGGTGGACGATCAACCA ] [+] EMBL CF196221 [ CATCCAAAATGGCTTCCTCCCC AAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAGCGCCAAGCCCGGCACCGACGGGGCCCCTCAACCTGACGGAGATCCTGACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGGCGACGGGCTGACGGTGCTGGCGCCGACGGACGCCGCGTTCGGGCGGCTCCGGCCGG GGACGCTCAACCGGATGGACGCGCAGGCGCAGGCGGAGCT GGTGCTGTACCACGTCCTCCCCAGGTAC TAC GGCTTCGTCACGTTCGAGA ] [+] EMBL OSS15581A [ AAATGGCTTCCTCCCC AAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAG GCCAAGCCCGGCACCGACGGGGCCCCTCAACCTGACGGAGATCCTGACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGGCGACGGGCTGACGGTGCTGGCGCCGACGGACGCCGCGTTCGGGCGGCTCCGGCCGG GGACGCTCAACCAGATGGACGCGCAGGCGCAGGCGGAGTT GGTGCTGTACCACGTCCTCCNCAGGTAC TAC GGCTTCGTCACGTTCGAGATCAACAACAACCCGGTGCGGAACCAGGCCTTCG ] [-] EMBL BI306135 [ gaCGAAGCGCCAAGCCCGGCACCGACGGGGCCCCTCAACCTGACGGAGATCCTGACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGGCGACGGGCTGACGGTGCTGGCGCCGACGGACGCCGCGTTCGGGCGGCTCCGGCCGG GGACGCTCAACCGGATGGACGCGCAGGCGCAGGCGGAGCT GGTGCTGTACCACGTCCTCCCCAGGTAC TAC GGCTTCGTCACGTTCGAGACCACCACCAACCCGGTGCGCACCCAGGCCTCCGGCCAGCGCGGCGTCTGCACCGTCAACGTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGGCCGAGCTCGGGAGGCCGCTCCGCGACGGCCACCCGCTCGCCGTGTACTCGCTCGACGCCGTCCTCCTCCCGCCCGACATGTTCGGCCCCGGCGCCAAGAAGGACTACGGCGCCGCCGACGCGCCCGCGGCGGCGGGGAAGCACGGGAAGCCGCAGACCGCGTCGTCGTCATCGGTGGCGGCGGCGCCTGACGAAGCGCCGTCGAAGGAGGTGGACGCC ] [+] EMBL BF430773 [ CCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGGCGACGGGCTGACGGTGCTGGCGCCGACGGACGCCGCGTTCGGGCGGCTCCGGCCGG GGACGCTCAACCGGATGGACGCGCAGGCGCAGGCGGAGCT GGTGCTGTACCACGTCCTCCCCAGGTACTTAC GGCTTCGTCACGTTCGAGACCACCACCAACCCGGTGCGCACCCAGGCCTCCGGCCAGCGCGGCGTCTGCACCGTCAACGTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGGCCGAGCTCGGGAGGCCGCTCCGCGACGGCCACCCGCTCGCCGTGTACTCGCTCGACGCCGTCCTCCTCCCGCCCGACATGTTCGGCCCCGGCGCCAAGAAGGACTACGGCGCCGCCGACGCGCCCGCGGCGGCGGGGAAGCACGGGAAGCCGCAGACCGCGTCGTCGTCATCGGTGGCGGCGGCGCCTGACGAAGCGCCGTCGAAGGAGGTGGACGCCACGGCGACGGCGGCCGCCGGCAGGATGGCGCCGGCGGGATGGGCGGCGGCGTTTGCAGGGGTCG ] [+] EMBL C73670 [ TGACGGTGCTGGCGCCGACGGACGCCGCGTTCGGGCGGCTCCGGCCGG GGACGCTCAACCAGATGGACGCGCAGGCGCAGGCGGA NT GGTGCTGTACCACGTCCTCCCCAGGTAC TAC GGCTTCGTCACGTTCGAGACCACCACCAACCCGGTGCGCACCCAGGCCTCCGG CAGCGCGGCGTCTGCACCGTCAACGTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGGCCGAGCTCGGGAGGCCGNTCCG GACGGCCAACCGTTCGCCGTGTACTNGTTCGACGCC ] [+] EMBL AU164100 [ AC TAC GGCTTCGTCACGTTCGAGACCACCACCAACCCGGTGCGCACCNAAG NTCCGGCCAGCGCGGCGTCTGCACCGTCAACGTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGGCCGAGCTCGGGAGGC NTCCGCGACGGCCACCCGCTCGCCGTGTACTCGCTCGACGCCGTCCTCCTCCCGCCCGACATGTTCGGCCCCGGCGCCAAGAAGGACTACGGCGCCGCCGACGCGCCCGCGGCGGCGGGGAAGCACGGGAAGCCGCAGACCGCGTCGTCGTCGTCGGTGGCGGCGGCGCCTGACGAAGCGCCGTCGAAGGAGGTGGACGCCACGGC ] consensusID : consensus_15001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [TACAGAAAGCAAATTAATTAAGCATCCAAAATGGCTTCCTCCCCAAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAGCGCCGTCGAAGGAGGTGGACGCCACGGCGACGGCGGCCGCCGGCAGGATGGCGCCGGCGGGATGGGCGGCGGCGTTTGCAGGGGTCGTGACCGCGGTGGTCGCCGTGAGCCTGCTCTCGTATTGATGAGCAGGCATGCATGCGATGCAGGCGATGCACATATCGTTAATTTACATTGGGTTTTTGCTCGATATATGCTACGCACAAGCACGCTCCATTTCGCTCTGTTAATATGTTGTGTACAAACAACATTGCATTTTGTTTATCAGATGTATACCTTGTGAATGCATGTTTTACATTCCAAGTTACTGCACCGATGTAGTTTTATAATTTACATATACGCTCAACTTTAATTCGTACACACTGTGTGTCATCTGAGTCAAATAGTACTAGTACTTGTTTTGTGCGTCAGTACCTCACTGGGGACCACCTATACATTTGTCGATAAATTTTCTACTAAAAATTTGACAGATGTAATTATAGTACAATCATAGTGTAATTACACTGTAACTTGTATGTAATTACACTGTAACTTACATATAACTACAGTGTAACTTGTATGTAAGTTTCACGTAATTTTGAATAGTTA] [+] EMBL AK064819 [TACAGAAAGCAAATTAATTAAGCATCCAAAATGGCTTCCTCCCCAAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAGCGCCGTCGAAGGAGGTGGACGCCACGGCGACGGCGGCCGCCGGCAGGATGGCGCCGGCGGGATGGGCGGCGGCGTTTGCAGGGGTCGTGACCGCGGTGGTCGCCGTGAGCCTGCTCTCGTATTGATGAGCAGGCATGCATGCGATGCAGGCGATGCACATATCGTTAATTTACATTGGGTTTTTGCTCGATATATGCTACGCACAAGCACGCTCCATTTCGCTCTGTTAATATGTTGTGTACAAACAACATTGCATTTTGTTTATCAGATGTATACCTTGTGAATGCATGTTTTACATTCCAAGTTACTGCACCGATGTAGTTTTATAATTTACATATACGCTCAACTTTAATTCGTACACACTGTGTGTCATCTGAGTCAAATAGTACTAGTACTTGTTTTGTGCGTCAGTACCTCACTGGGGACCACCTATACATTTGTCGATAAATTTTCTACTAAAAATTTGACAGATGTAATTATAGTACAATCATAGTGTAATTACACTGTAACTTGTATGTAATTACACTGTAACTTACATATAACTACAGTGTAACTTGTATGTAAGTTTCACGTAATTTTGAATAGTTA] consensusID : consensus_15001#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [GTACTGTCCCTAACCNTAGCCACAGTCTCCGTCGTCGTCGTCTCCGGCGCCGACGAAGCGCCAAGCCCGGCACNGACGAGGCCCCTCAACGTGACGGAGATCATGACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGGCGACGGGCTGACGGTGCTGGCGCCGACGGACGCCGCGTTCGGGCGGCTCCGGCCGGGGACGCTCAACCGGATGGACGCGCAGGCGCAGGCGGAGCTGGTGCTGTACCACGTCCTCCCCAGGTACTACGGCTTCGTCACGTTCGAGACCACCNACCAACCCGGTGCGCACCCAGGCCTCCGGCCAGCGCGGCGTCTGCACCGTCAACGTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGGCCGAGCTCGGGAGGCCGCTCCGCGACGGCCACCCGCTCGCCGTGTACTCGCTCGACGCCGTCCTCCTCCCGCCCGACATGTTCGGCCCCGGCGCCAAGAAGGACTACGGCGCCGCCGACGCGCCCGCGGCGGCGGGGAAGCACGGGAAGCCGCAGACCGCGTCGTCGTCATCGGTGGCGGCGGCGCCTGACGAAGCGCCGTCGAAGGAGGTGGACGCCACGGCGACGGCGGCCCAAGCTTTTCC] [-] EMBL BI306720 [GTACTGTCCCTAACCNTAGCCACAGTCTCCGTCGTCGTCGTCTCCGGCGCCGACGAAGCGCCAAGCCCGGCACNGACGAGGCCCCTCAACGTGACGGAGATCATGACGAAGGCCGGGCACTACAACACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCAGCCTGCTGAACAACGACCGGAACGGCGACGGGCTGACGGTGCTGGCGCCGACGGACGCCGCGTTCGGGCGGCTCCGGCCGGGGACGCTCAACCGGATGGACGCGCAGGCGCAGGCGGAGCTGGTGCTGTACCACGTCCTCCCCAGGTACTACGGCTTCGTCACGTTCGAGACCACCNACCAACCCGGTGCGCACCCAGGCCTCCGGCCAGCGCGGCGTCTGCACCGTCAACGTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGGCCGAGCTCGGGAGGCCGCTCCGCGACGGCCACCCGCTCGCCGTGTACTCGCTCGACGCCGTCCTCCTCCCGCCCGACATGTTCGGCCCCGGCGCCAAGAAGGACTACGGCGCCGCCGACGCGCCCGCGGCGGCGGGGAAGCACGGGAAGCCGCAGACCGCGTCGTCGTCATCGGTGGCGGCGGCGCCTGACGAAGCGCCGTCGAAGGAGGTGGACGCCACGGCGACGGCGGCCCAAGCTTTTCC] consensusID : consensus_15001#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [GCCGGGGCCCCCCTCAAACCCTGACCGGAGATCCCTGACCGAAAAGGCCCGGGCCAACTACAAACAACCCTTCGTCCCGGCTTGCCTTCCAAGGACACGGAGGTGACGTCGCAGTGACACCTGCTGAACAACGACCGGAACGCGACGGCTGACGGTCTGCCCGACGACCCGCGTTCGGCGGCTCCGCCGGGGACGCTCAACCGGATGACGCGCAGGCGCAGGCGGAGCTGGTGCTGTACCACGTCCTCCCCAGGTACTACGGCTTCGTCACGTTCGAGACCACCACCAACCCGGTGCGCACCCAGGCCTCCGGCCAGCGCGGCGTCTGCACCGTCAACGTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGCCGAGCTCGGGAGGCCGCTCCAGCGACGGCCACCCGCTCGCCGTGTACTCGCTCGACCCGTCCTCCTCCCGCCCAGACATGTTCGGCCNCCGGCCCAAGAAGGACTACGGCCCGCCACGCGCCCGCGCGGCGGGGAAGCACGGGAACCCAGACCGCGTCGTCGTCGTCGTGCGCGGCGCCTGACGAAGCCCTCGAAGGAGTGACCCA] [+] EMBL BI806444 [GCCGGGGCCCCCCTCAAACCCTGACCGGAGATCCCTGACCGAAAAGGCCCGGGCCAACTACAAACAACCCTTCGTCCCGGCTTGCCTTCCAAGGACACGGAGGTGACGTCGCAGTGACACCTGCTGAACAACGACCGGAACGCGACGGCTGACGGTCTGCCCGACGACCCGCGTTCGGCGGCTCCGCCGGGGACGCTCAACCGGATGACGCGCAGGCGCAGGCGGAGCTGGTGCTGTACCACGTCCTCCCCAGGTACTACGGCTTCGTCACGTTCGAGACCACCACCAACCCGGTGCGCACCCAGGCCTCCGGCCAGCGCGGCGTCTGCACCGTCAACGTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGCCGAGCTCGGGAGGCCGCTCCAGCGACGGCCACCCGCTCGCCGTGTACTCGCTCGACCCGTCCTCCTCCCGCCCAGACATGTTCGGCCNCCGGCCCAAGAAGGACTACGGCCCGCCACGCGCCCGCGCGGCGGGGAAGCACGGGAACCCAGACCGCGTCGTCGTCGTCGTGCGCGGCGCCTGACGAAGCCCTCGAAGGAGTGACCCA] consensusID : consensus_15001#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [CGGTGGGCACCCAGGCCTTCGGCCAGGGGGGGGTTTGCCCCGTCAAAGTCACCCCCCCCGGGGAGGACAGGGGGGGGGTTTTGTCCGGGGTGGTGGAGGCCGAGCTTGGGAGGCCGTTCCGGGAGGGCCCCCCGCTTGCCGGGTATTTGGTTGAAGCCGTCCTCCTCCCGCCCGAAATGTTTGGCCCCGGGGCCAAGAAGGATTTAGGGGCCCCCGAGGGGCCCGGGGGGGGGGGGAAGCACGGGAAACCGCAGACCGCGTTGTTTTTGTTGGGGGGGGGGGGGCCTGACGAAGCGCCGTTGAAGGAGGGGGACCCCCCGGGGACGGGGGCCCCCGGCAGGATGGCCCCGGGGGGATGGGGGGGGGGGTTTTCAGGGGTTGTGACCGCGGGGGTTGCCGTGAGCCTGCTTTTGTTTTGATGAGCAGGCATGCATGGGATGCAGGGGATGCACATATCGTTAATTTTCATTGGGTTTTTGCTCGATATATGGTACGCCCAAGCCCGGTCCATTTTGTTTTGTTAAAATGTTGGGTACAAACAACATTGCATTTTGTTTTTCAGAGGTA] [-] EMBL CB653154 [CGGTGGGCACCCAGGCCTTCGGCCAGGGGGGGGTTTGCCCCGTCAAAGTCACCCCCCCCGGGGAGGACAGGGGGGGGGTTTTGTCCGGGGTGGTGGAGGCCGAGCTTGGGAGGCCGTTCCGGGAGGGCCCCCCGCTTGCCGGGTATTTGGTTGAAGCCGTCCTCCTCCCGCCCGAAATGTTTGGCCCCGGGGCCAAGAAGGATTTAGGGGCCCCCGAGGGGCCCGGGGGGGGGGGGAAGCACGGGAAACCGCAGACCGCGTTGTTTTTGTTGGGGGGGGGGGGGCCTGACGAAGCGCCGTTGAAGGAGGGGGACCCCCCGGGGACGGGGGCCCCCGGCAGGATGGCCCCGGGGGGATGGGGGGGGGGGTTTTCAGGGGTTGTGACCGCGGGGGTTGCCGTGAGCCTGCTTTTGTTTTGATGAGCAGGCATGCATGGGATGCAGGGGATGCACATATCGTTAATTTTCATTGGGTTTTTGCTCGATATATGGTACGCCCAAGCCCGGTCCATTTTGTTTTGTTAAAATGTTGGGTACAAACAACATTGCATTTTGTTTTTCAGAGGTA] consensusID : consensus_15001#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [AGCATCCAAAATGGCTTCCTCCCCAAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAGGCCAAGCCCGNCACCGACGGGGCCCCTCAACCTGACGGAGATCCTGACGAAGGCCGGGCACTACAACACCTTCGTCCGGNTGCTCAAGGACACGGAGGTGACGTCGTAGGTGAGCAGCCTGCTGTACCACGTCCTCCCCAGGTACTACGGCTTCGTCACGTTCGAGAACACCACCAACCAGATGGACGCGCAGNGCAGNCGGAGTGGTGCTGTACCACGTCCTCCN] [+] EMBL OSC8571 [AGCATCCAAAATGGCTTCCTCCCCAAGCACAGTATTTCTTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAGGCCAAGCCCGNCACCGACGGGGCCCCTCAACCTGACGGAGATCCTGACGAAGGCCGGGCACTACAACACCTTCGTCCGGNTGCTCAAGGACACGGAGGTGACGTCGTAGGTGAGCAGCCTGCTGTACCACGTCCTCCCCAGGTACTACGGCTTCGTCACGTTCGAGAACACCACCAACCAGATGGACGCGCAGNGCAGNCGGAGTGGTGCTGTACCACGTCCTCCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15001#2 ------------------------------------------------------------ consensus_15001#3 ------------------------------------------------------------ consensus_15001#5 ------------------------------------------------------------ consensus_15001#0 TATACAGAAAGCAAATTAATTAAGCATCCAAAATGGCTTCCTCCCCAAGCACAGTATTTC 60 consensus_15001#4 ------------------------------------------------------------ consensus_15001#1 ------------------------------------------------------------ consensus_15001#2 --GTACTGTCCCTAACCNTAGCCACAGTCTCCGTCGTCGTCGTCTCCGGCGCCGACGAAG 58 consensus_15001#3 --------------------------------------------------GCCGGGGCCC 10 consensus_15001#5 ------------------------------------------------------------ consensus_15001#0 TTGTACTGTCCCTAACCCTAGCCACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAG 120 consensus_15001#4 ------------------------------------------------------------ consensus_15001#1 ---------------------TACAGAAAGCAAATTAATTAAGCATCCAAAATGGCTTCC 39 consensus_15001#2 CGCCAAGCCCGGCACNGACGAGGCCCCTCAACGTGACGGAGATCATGACGAAGGCCGG-G 117 consensus_15001#3 CCCTCAAACCCTGACCG--GAGATCCCTGACCGAAA---AGGCCCGGGCCAACTACAA-A 64 consensus_15001#5 ----AGCATCCAAAATG----GCTTCCTCCCCAAG--------CACAGTATTTCTTGT-A 43 consensus_15001#0 -GCCAAGCCCGGCACCGACGGGGCCCCTCAACCTGACGGAGATCCTGACGAAGGCCGG-G 178 consensus_15001#4 --------CGGTGGGCACCCAGGCCTTCGGCCAGGG-------GGGGGTTTGCCCCGTCA 45 consensus_15001#1 TCCCCAAGCACAGTATTTCTTGTACTGTCCCTAACCCT--AGCCACCGTCTCCGTCGTCG 97 * consensus_15001#2 CACTACAA--CACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCA 175 consensus_15001#3 CAACCCTT--CGTCC-CGGCTTGCCTTCCAAGGACACGGAGGTGACGTCGCAG-TGAC-- 118 consensus_15001#5 CTGTCCCT--AACCC-TAGCC-ACCGTCTCCGTCGTCGTCGTCTCCGGCGCCGGCGAAGG 99 consensus_15001#0 CACTACAA--CACCTTCGTCCGGCTGCTCAAGGACACGGAGGTGACGTCGCAGGTGAGCA 236 consensus_15001#4 AAGTCACC--CCCCCCGGGGAGGACAGGGGGGGGGTTTTGTCCGGGGTGGTGGAGGCCGA 103 consensus_15001#1 TCGTCTCCGGCGCCGGCGAAGCGCCGTCGAAGGAGGTGGACGCCACGGCGACGGCGGCCG 157 * * * * * * consensus_15001#2 GC--CTGCTGAACAACGACCGGAACGGCGACGGG-CTGACGGTGCTGGCGCCGACGGA-- 230 consensus_15001#3 AC--CTGCTGAACAACGACCGGAACG-CGACGG--CTGACGGTCTGCCCGACGAC----- 168 consensus_15001#5 CC--AAGCCCGNCACCGACGGGGCC--CCTCAAC-CTGACGGAGATCCTGACGAAGGC-- 152 consensus_15001#0 GC--CTGCTGAACAACGACCGGAACGGCGACGGG-CTGACGGTGCTGGCGCCGACGGA-- 291 consensus_15001#4 GC--TTGGGAGGCCGTTCCGGGAGGGCCCCCCGC-TTGCCGGGTATTTGGTTGAAGCCGT 160 consensus_15001#1 CCGGCAGGATGGCGCCGGCGGGATGGGCGGCGGCGTTTGCAGGGGTCGTGACCGCGGT-- 215 * * * * ** * * * * * * consensus_15001#2 ---CGCCGCGTTCGGGCGGCTCCGGCCGGGGACGCTCAAC-CGGATGGACGCGCAGGCGC 286 consensus_15001#3 -----CCGCGTTCGG-CGGCTCCG-CCGGGGACGCTCAAC-CGGATG-ACGCGCAGGCGC 219 consensus_15001#5 ---C-GGGCACTACAACACCTTCGTCCGG--NTGCTCAAG-GACACGGAGGTGACGTCGT 205 consensus_15001#0 ---CGCCGCGTTCGGGCGGCTCCGGCCGGGGACGCTCAAC-CAGATGGACGCGCAGGCGC 347 consensus_15001#4 CCTCCTCCCGCCCGAAATGTTTGGCCCCGGGGCCAAGAAG-GATTTAGGGGCCCCCGAGG 219 consensus_15001#1 -----GGTCGCCGTG--AGCCTGCTCTCGTATTGATGAGCAGGCATGCATGCGATGCAGG 268 * * * * * * consensus_15001#2 AGGCGGAGCTGGTGCTGTACCACGTCCTCCCCAGGTACTACGGCTTCGTCACGTTCGAGA 346 consensus_15001#3 AGGCGGAGCTGGTGCTGTACCACGTCCTCCCCAGGTACTACGGCTTCGTCACGTTCGAGA 279 consensus_15001#5 AGGTGAGCAGCCTGCTGTACCACGTCCTCCCCAGGTACTACGGCTTCGTCACGTTCGAGA 265 consensus_15001#0 AGGCGGAGCTGGTGCTGTACCACGTCCTCCCCAGGTACTACGGCTTCGTCACGTTCGAGA 407 consensus_15001#4 GGCCCGGGGGGGGGGGGAAGCACGGGAAACCGCAG-ACCGCGTTGTTTTTGTTGGGGGGG 278 consensus_15001#1 CGATGCACATATCGTTAATTTACATTGGGTTTTTGCTCGATATATGCTACGCACAAGCAC 328 * * ** * * * consensus_15001#2 CCACCNACCAACCCGGTGCGCACCCAGGCCTCCGGCCAGCGCGGCGTCTGCACCGTCAAC 406 consensus_15001#3 CCACCA-CCAACCCGGTGCGCACCCAGGCCTCCGGCCAGCGCGGCGTCTGCACCGTCAAC 338 consensus_15001#5 ACACCA-CCAACCAGATGGACGCGCAGNGC---AGNCGGAGTGGTG-CTGTACC----AC 316 consensus_15001#0 CCACCA-CCAACCCGGTGCGCACCCAGGCCTCCGGCCAGCGCGGCGTCTGCACCGTCAAC 466 consensus_15001#4 GGGGGGCCTGACGAAGCGCCGTTGAAGGAGGGGGACCCCCCGGGGACGGGGGCCCCCGGC 338 consensus_15001#1 GCTCCATTTCGCTCTGTTAATATGTTGTGTACAAACAACATTGCATTTTGTTTATCAGAT 388 * * * * consensus_15001#2 GTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGGCCGAGCTC 466 consensus_15001#3 GTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAG-CCGAGCTC 397 consensus_15001#5 GTCCTCCN---------------------------------------------------- 324 consensus_15001#0 GTCACCACCGCCGGCGAGGACAGGGTGCGCGTCTCGTCCGGGGTGGTGGAGGCCGAGCTC 526 consensus_15001#4 AGGATGGCCCCGGGGGGATGGGGGGGGGGGTTTTCAGGGGTTGTGACCGCGGGGGTTGCC 398 consensus_15001#1 GTATACCTTGTGAATGCATGTTTTACATTCCAAGTTACTGCACCGATGTAGTTTTATAAT 448 consensus_15001#2 GGGAGGCCGCTCC-GCGACGGCCACCCGCTCGCCGTGTACTCGCTCGACGCCGTCCTCCT 525 consensus_15001#3 GGGAGGCCGCTCCAGCGACGGCCACCCGCTCGCCGTGTACTCGCTCGAC-CCGTCCTCCT 456 consensus_15001#5 ------------------------------------------------------------ consensus_15001#0 GGGAGGCCGCTCC-GCGACGGCCACCCGCTCGCCGTGTACTCGCTCGACGCCGTCCTCCT 585 consensus_15001#4 GTGAGCCTGCTTTTGTTTTGATGAGCAGG----CATGCATGGGATGCAGGGGATGCACAT 454 consensus_15001#1 TTACATATACGCTCAACTTTAATTCGTACACACTGTGTGTCATCTGAGTCAAATAGTACT 508 consensus_15001#2 CCCGCCC-GACATGTTCGGCCCCGGCGCCAAGAAGGACTACGGCGCCGCCGACGCGCCCG 584 consensus_15001#3 CCCGCCCAGACATGTTCGGCCNCCGGCCCAAGAAGGACTACGGC-CCGCC-ACGCGCCCG 514 consensus_15001#5 ------------------------------------------------------------ consensus_15001#0 CCCGCCC-GACATGTTCGGCCCCGGCGCCAAGAAGGACTACGGCGCCGCCGACGCGCCCG 644 consensus_15001#4 ATCGTTAATTTTCATTGGGTTTTTGCTCGATATATGGTACGCCCAAGCCCGGTCCATTTT 514 consensus_15001#1 AGTACTT-GTTTTGTGCGTCAGTACCTCACTGGGGACCACCTATACATTTGTCGATAAAT 567 consensus_15001#2 CGGCGGCGGGGAAGCACGGGAAGCCGCAGACCGCGTCGTCGTCATCGGTGGCGGCGGCGC 644 consensus_15001#3 CG-CGGCGGGGAAGCACGGGAACCC--AGACCGCGTCGTCGTCGTCG--TGCG-CGGCGC 568 consensus_15001#5 ------------------------------------------------------------ consensus_15001#0 CGGCGGCGGGGAAGCACGGGAAGCCGCAGACCGCGTCGTCGTCGTCGGTGGCGGCGGCGC 704 consensus_15001#4 GTTTTGTTAAAATGTTGGGTACAAACAACATTGCATTTTGTTTTTCAGAGGTA------- 567 consensus_15001#1 TTTCTACTAAAAATTTGACAGATGTAATTATAGTACAATCATAGTGTAATTACACTGTAA 627 consensus_15001#2 CTGACGAAGCGCCGTCGAAGGAGGTGGACGCCACGGCGACGGCGGCCCAAGCTTTTCC-- 702 consensus_15001#3 CTGACGAAG--CCCTCGAAGGAGTGACCCA------------------------------ 596 consensus_15001#5 ------------------------------------------------------------ consensus_15001#0 CTGACGAAGCGCCGTCGAAGGAGGTGGACGCCACGGCGACGGCGGCCGCCGGCAGGATGG 764 consensus_15001#4 ------------------------------------------------------------ consensus_15001#1 CTTGTATGTAATTACACTGTAACTTACATATAACTACAGTGTAACTTGTATGTAAGTTTC 687 consensus_15001#2 ------------------------------------------------------------ consensus_15001#3 ------------------------------------------------------------ consensus_15001#5 ------------------------------------------------------------ consensus_15001#0 CGCCGGCGGGATGGGCGGCGGCGTTTGCAGGGGTCGTGACCGCGGTGGTCGCCGTGAGCC 824 consensus_15001#4 ------------------------------------------------------------ consensus_15001#1 ACGTAATTTTGAATAGTTA----------------------------------------- 706 consensus_15001#2 ------------------------------------------------------------ consensus_15001#3 ------------------------------------------------------------ consensus_15001#5 ------------------------------------------------------------ consensus_15001#0 TGCTCTCGTATTGATGAGCAGGCATGCATGCGATGCAGGCGATGCACATATCGTTAATTT 884 consensus_15001#4 ------------------------------------------------------------ consensus_15001#1 ------------------------------------------------------------ consensus_15001#2 ------------------------------------------------------------ consensus_15001#3 ------------------------------------------------------------ consensus_15001#5 ------------------------------------------------------------ consensus_15001#0 ACATTGGGTTTTTGCTCGATATATGCTACGCACAAGCACGCTCCATTTCGCTCTGTTAAT 944 consensus_15001#4 ------------------------------------------------------------ consensus_15001#1 ------------------------------------------------------------ consensus_15001#2 ------------------------------------------------------------ consensus_15001#3 ------------------------------------------------------------ consensus_15001#5 ------------------------------------------------------------ consensus_15001#0 ATGTTGTGTACAAACAACATTGCATTTTGTTTATCAGATGTATACCTTGTGAATGCATGT 1004 consensus_15001#4 ------------------------------------------------------------ consensus_15001#1 ------------------------------------------------------------ consensus_15001#2 ---------------------------------------------------------- consensus_15001#3 ---------------------------------------------------------- consensus_15001#5 ---------------------------------------------------------- consensus_15001#0 TTTACATTCCAAGTTACTGCACCGATGTAGTTTTATAATTTACATATACGCTCAACTT 1062 consensus_15001#4 ---------------------------------------------------------- consensus_15001#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||