These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15009#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1721 fasta sequence [GTAGTTTGGGAAGGTGTTTTCTCTCACTCAATCTCCCAGCAACGAATAGCAACCTAGGTTCCCATCGCAACTGACCGATCCCCAGCCGCCGCCGCCGCCGCCGCCGCCGCTCAAGGAAGCGCATCAGATGGCATCGCCGTCGCTCAGGGACGCCGTGGGCGGCCTCGACCGCGACCCCTTCGTCTCCCTCCTCGGGAAGCTCATCGGCGAGTCCCGCCGCCTGCAGAACGACCCGCCGGCCCTCGTCCCGCAGGAGGACCTCGTGGCGCAGCACG-TGGTCGACGCGCTCCTCCCGGTGTCCATGGAGACCGGGGGCGGCCCGCTCGTCGTGCGGAAGGTGAGCTACGCCGAGGGCCGGAGCAACGTCATCGTCGAGTACCCCGGCACCGTCCCCGGCCGCGCCATCTCCTTCGTCGGCATGCACATGGACGTCGTCCCCGCCAACCCCGACGAATGGGATTTCGATCCCTTCTCACTAACGTTTGACAGTGAAGACAAGGACAAACTTAGGGGCCGTGGGACAACCGACTGCCTTGGCCATGTGGCGCTGGTTGCTCAGCTCATGAGGAGACTTGGTGAGGTCAAGCCGGTGCTGAAACATTCGGTCATTGCGGTGTTCATTGCCAATGAGGAAAACTCACTTATCACTGGCATTGGTGTCGATGGCCTTGTGAAGGATGGGTTGCTGGATAAGCTCAAGAATGGACCCTTGTTTTGGATAGATACGGCCGATAAGCAGCCTTGCATCGGCACCGGTGGAGTGATTACATGGCATCTGAAGGCAATTGGGAAGCTATTCCACAGTGGCCTCGCACATAAGGCCATAAATGCCATGGAGTTAAATATGGAAGCACTGAAAGAAATACAGACTATGTTTTACAACGATTTCCCTCCACATGAGAAAGAGAAGCTCTATAAGTTTGCTA-CCCCATCTACGATCAAA-CCAACAAAATGGAGCTATCCTGGTGGGGGTCTGAATCAAATTCCTGGAG-AATGTACAATTTCAGGGGATATAAGGTTGACTCCTTTCTACAGCACGACATCTGTAGTGAAGAAATTACAAGAGTATGTACATGATATAAATGAGAACATTGAAAAGCTTCCTACTCGTGGTCCGGTATCTAAATATGTTCTTCCTGATGAAAACCTCCGAGGAAGGCTTGAGATCACTATTGATGAAGATATTATGAATGGGGTGGCCTGTAATCTCGAGTCGCGAGGCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGAACCATATTCCATTACTGGGAGTCTGCCCCTGATTAGGGAATTACAGGATGAAGGGTTTGATGTTCAGACTGCTGGGTATGGCTTACTCAAGACATACCACGCAAAGAACGAGTACTGTCTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTCTGAGCATCATTTCACAGTTGGAAGCAGATGTTTGAGTCTTGTTTTAGGGAGGAAAAAAATGAGCGTTCACTGGTACTTATTCCTGTTACTTGTTGCTCTAATAAAGGCACTCACAGTGCAAGCTACCCAAAATGAGGAACCTCAGGCTAAGGCCACACCTCCTCTCCCACGGTGCAAAGATGCTTTAGGGTGTTCTTAGTTTTTCATGTAAACCCTTGTCATCTTCTATTCTAGTCCTCACATGTTTTCAAACAACATAACATACAAAATTTACCACTAAAAAAAAAAAAAAAACAC] [+] EMBL AK105916 [GTAGTTTGGGAAGGTGTTTTCTCTCACTCAATCTCCCAGCAACGAATAGCAACCTAGGTTCCCATCGCAACTGACCGATCCCCAGCCGCCGCCGCCGCCGCCGCCGCCGCTCAAGGAAGCGCATCAGATGGCATCGCCGTCGCTCAGGGACGCCGTGGGCGGCCTCGACCGCGACCCCTTCGTCTCCCTCCTCGGGAAGCTCATCGGCGAGTCCCGCCGCCTGCAGAACGACCCGCCGGCCCTCGTCCCGCAGGAGGACCTCGTGGCGCAGCACG TGGTCGACGCGCTCCTCCCGGTGTCCATGGAGACCGGGGGCGGCCCGCTCGTCGTGCGGAAGGTGAGCTACGCCGAGGGCCGGAGCAACGTCATCGTCGAGTACCCCGGCACCGTCCCCGGCCGCGCCATCTCCTTCGTCGGCATGCACATGGACGTCGTCCCCGCCAACCCCGACGAATGGGATTTCGATCCCTTCTCACTAACGTTTGACAGTGAAGACAAGGACAAACTTAGGGGCCGTGGGACAACCGACTGCCTTGGCCATGTGGCGCTGGTTGCTCAGCTCATGAGGAGACTTGGTGAGGTCAAGCCGGTGCTGAAACATTCGGTCATTGCGGTGTTCATTGCCAATGAGGAAAACTCACTTATCACTGGCATTGGTGTCGATGGCCTTGTGAAGGATGGGTTGCTGGATAAGCTCAAGAATGGACCCTTGTTTTGGATAGATACGGCCGATAAGCAGCCTTGCATCGGCACCGGTGGAGTGATTACATGGCATCTGAAGGCAATTGGGAAGCTATTCCACAGTGGCCTCGCACATAAGGCCATAAATGCCATGGAGTTAAATATGGAAGCACTGAAAGAAATACAGACTATGTTTTACAACGATTTCCCTCCACATGAGAAAGAGAAGCTCTATAAGTTTGCTA CCCCATCTACGATCAAA CCAACAAAATGGAGCTATCCTGGTGGGGGTCTGAATCAAATTCCTGGAG AATGTACAATTTCAGGGGATATAAGGTTGACTCCTTTCTACAGCACGACATCTGTAGTGAAGAAATTACAAGAGTATGTACATGATATAAATGAGAACATTGAAAAGCTTCCTACTCGTGGTCCGGTATCTAAATATGTTCTTCCTGATGAAAACCTCCGAGGAAGGCTTGAGATCACTATTGATGAAGATATTATGAATGGGGTGGCCTGTAATCTCGAGTCGCGAGGCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGAACCATATTCCATTACTGGGAGTCTGCCCCTGATTAGGGAATTACAGGATGAAGGGTTTGATGTTCAGACTGCTGGGTATGGCTTACTCAAGACATACCACGCAAAGAACGAGTACTGTCTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTCTGAGCATCATTTCACAGTTGGAAGCAGATGTTTGAGTCTTGTTTTAGGGAGGAAAAAAATGAGCGTTCACTGGTACTTATTCCTGTTACTTGTTGCTCTAATAAAGGCACTCACAGTGCAAGCTACCCAAAATGAGGAACCTCAGGCTAAGGCCACACCTCCTCTCCCACGGTGCAAAGATGCTTTAGGGTGTTCTTAGTTTTTCATGTAAACCCTTGTCATCTTCTATTCTAGTCCTCACATGTTTTCAAACAACATAACATACAAA ] [+] EMBL AK101568 [ TCACTCAATCTCCCAGCAACGAATAGCAACCTAGGTTCCCATCGCAACTGACCGATCCCCAGCCGCCGCCGCCGCCGCCGCCGCCGCTCAAGGAAGCGCATCAGATGGCATCGCCGTCGCTCAGGGACGCCGTGGGCGGCCTCGACCGCGACCCCTTCGTCTCCCTCCTCGGGAAGCTCATCGGCGAGTCCCGCCGCCTGCAGAACGACCCGCCGGCCCTCGTCCCGCAGGAGGACCTCGTGGCGCAGCACG TGGTCGACGCGCTCCTCCCGGTGTCCATGGAGACCGGGGGCGGCCCGCTCGTCGTGCGGAAGGTGAGCTACGCCGAGGGCCGGAGCAACGTCATCGTCGAGTACCCCGGCACCGTCCCCGGCCGCGCCATCTCCTTCGTCGGCATGCACATGGACGTCGTCCCCGCCAACCCCGACGAATGGGATTTCGATCCCTTCTCACTAACGTTTGACAGTGAAGACAAGGACAAACTTAGGGGCCGTGGGACAACCGACTGCCTTGGCCATGTGGCGCTGGTTGCTCAGCTCATGAGGAGACTTGGTGAGGTCAAGCCGGTGCTGAAACATTCGGTCATTGCGGTGTTCATTGCCAATGAGGAAAACTCACTTATCACTGGCATTGGTGTCGATGGCCTTGTGAAGGATGGGTTGCTGGATAAGCTCAAGAATGGACCCTTGTTTTGGATAGATACGGCCGATAAGCAGCCTTGCATCGGCACCGGTGGAGTGATTACATGGCATCTGAAGGCAATTGGGAAGCTATTCCACAGTGGCCTCGCACATAAGGCCATAAATGCCATGGAGTTAAATATGGAAGCACTGAAAGAAATACAGACTATGTTTTACAACGATTTCCCTCCACATGAGAAAGAGAAGCTCTATAAGTTTGCTA CCCCATCTACGATCAAA CCAACAAAATGGAGCTATCCTGGTGGGGGTCTGAATCAAATTCCTGGAG AATGTACAATTTCAGGGGATATAAGGTTGACTCCTTTCTACAGCACGACATCTGTAGTGAAGAAATTACAAGAGTATGTACATGATATAAATGAGAACATTGAAAAGCTTCCTACTCGTGGTCCGGTATCTAAATATGTTCTTCCTGATGAAAACCTCCGAGGAAGGCTTGAGATCACTATTGATGAAGATATTATGAATGGGGTGGCCTGTAATCTCGAGTCGCGAGGCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGAACCATATTCCATTACTGGGAGTCTGCCCCTGATTAGGGAATTACAGGATGAAGGGTTTGATGTTCAGACTGCTGGGTATGGCTTACTCAAGACATACCACGCAAAGAACGAGTACTGTCTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTCTGAGCATCATTTCACAGTTGGAAGCAGATGTTTGAGTCTTGTTTTAGGGAGGAAAAAAATGAGCGTTCACTGGTACTTATTCCTGTTACTTGTTGCTCTAATAAAGGCACTCACAGTGCAAGCTACCCAAAATGAGGAACCTCAGGCTAAGGCCACACCTCCTCTCCCACGGTGCAAAGATGCTTTAGGGTGTTCTTAGTTTTTCATGTAAACCCTTGTCATCTTCTATTCTAGTCCTCACATGTTTTCAAACAACATAACATACAAA ] [+] EMBL AU164722 [ CCAGCAACGAATAGCAACCTAGGTTCCCATCGCAACTGACCGATCCCCAGCCGCCGCCGCCGCCGCCGCCGCCGCTCAAGGAAGCGCATCAGATGGCATCGCCGTCGCTCAGGGACGCCGTGGG GGCCTCGACCGCGACNCCTTCGTCTNCCTCCTCGGGAAGCTCATCGGCGAGTCCCGNCGCCTGCAGAANGACCCGCCGGCCCTCGTCCCGCA GAGGACC ] [+] EMBL AU165559 [ GAATAGCAACCTAGGTTCCCATCGCAACTGACCGATCCCCAGCCGCCGCCGCCGCCGCCGCCGCCGCTCAAGGAAGCGCATCAGATGGCATCGCCGTCGCTCAGGGACGCCGTGGG GGCCTCGACCGCGACCCCTTCGTCTCCCTCCTCGGGAAGCTCATCGGCGAGTCCCGCCGCCTGCAGAACGACCCGCCGGCCCTCGTCCCGCAGGAGGACCTCGTGGCGCA NACGTTGGTCGACGCGCTCCTCCCGGTGTCCATGGAGACCGGGGGCGGCCCGCTCGTCGTGCGGAAGGTGAGCTACGCCGAAGGCCGGAGCAACGTCATCGTCGAGTAACCCGGCAACGTTCCCGGCCGCG CATCTt ] [+] EMBL AU076051 [ GAATAGCAACCTAGGTTCCCATCGCAACTGACCGATCCCCAGCCGCCGCCGCCGCCGCCGCCGCCGCTCAAGGAAGCGCATCAGATGGCATCGCCGTCGCTCAGGGACGCCGTGGGCGGCCTCGACCGCGACCCCTTCGTCTCCCTCCTCGGGAAGCTCATCGGCGAGTCCCGCCGCCTGCAGAACGACNCGCCGGCCCTCGTCCCGCAGGAGGACCTCGTGGCGCA NACG TGGTCGACGCGCTCCTCCCGGTGTCCATGGAGACCGGGGGCGGCCCGCTCGTCGTGCGGAAGGTGAGCTACGCCGAGGGCCGGAGCAACGTCATCGTCG ] [+] EMBL CB674566 [ ATAGCAACCTAGGTTCCCATCGCAACTGACCGATCCCCAGCCGCCGCCGCCGCCGCCGCCGCCGCTCAAGGAAGCGCATCAGATGGCATCGCCGTCGCTCAGGGACGCCGTGGGCGGCCTCGACCGCGACCCCTTCGTCTCCCTCCTCGGGAAGCTCATCGGCGAGTCCCGCCGCCTGCAGAACGACCCGCCGGCCCTCGTCCCGCAGGAGGACCTCGTGGCGCAGCACG TGGTCGACGCGCTCCTCCCGGTGTCCATGGAGACCGGGGGCGGCCCGCTCGTCGTGCGGAAGGTGAGCTACGCCGAGGGCCGGAGCAACGTCATCGTCGAGTACCCCGGCACCGTCCCCGGCCGCGCCATCTCCTTCGTCGGCATGCACATGGACGTCGTCCCCGCCAACCCCGACGAATGGGATTTCGATCCCTTCTCACTAACGTTTGACAGTGAAGACAAGGACAAACTTAGGGGCCGTGGGACAACCGACTGCCTTGGCCATGTGGCGCTGGTTGCTCAGCTCATGAGGAGACTTGGTGAGGTCAAGCCGGTGCTGAAACATTCGGTCATTGCGGTGTTCATTGCCAATGAGGAAAACTCACTTATCACTGGCATTGGTGTCGATGGCCTTGTGAAGGATGGGTTGCTGGATAAGCTCAAGAATGGACCCTTGTTTTGGATAGATACGGCCGATAAGCAGCCTTGCATCGGCACCGGTGGAGTGATTACATGGCATCTGAAGGCAATTGG ] [+] EMBL AU181904 [ CCGATCCCCAGCCGCCGCCGCCGCCGCCGCCGCCGCTCAAGGAAGCGCATCAGATGGCATCGCCGTCGCTCAGGGACGCCGTGGGCGGCCTCGACCGCGACCCCTTCGTCTCCCTCCTCGGGAAGCTCATCGGCGAGTCCCGCCGCCTGCAGAACGACCCGCCGGCCCTCGTCCCGCAGGAGGACCTCGTGGCGCAGCACG TGGTCGACGCGCTCCTCCCGGTGTCCATGGAGACCGGGGGCGGCCCGCTCGTCGTGCGGAAGGTGAGCTACGCCGAGGGCCGGAGCAACGTCATCGTCGAGTACCCCGGCACCGTCCCCGGCCGCGCCATCTCCTTCGTCGGCATGCACATGGACGTNGNCC ] [+] EMBL CB635838 [ cccatCCGCCGCCGCCGCCGCCGCCGCTCAAGGAAGCGCATCATATGGCATCGCCGTCGCTCATGGACGCCGTGGGCGGCCTCTACCGCGACCCCTTCGTCTCCCTCCTCGGGAAGCTCATCGGCGAGTCCCGCCGCCTGCCTAACGACCCGCCGGCCCTCGTCCCGCAGGAAGACCTCGTGGCGCAACACG TGGTCGACGCGCTCCTCCCGGTGTCCACGGAGACCGGGGGCGGTCCGCTCGTCGTGCGGAAGGTGAGCTACGCCGAGGGCCGGAGCAACGTCATCGTCGAGTACCCCGGCACCGTCCCCGGCCG ] [+] EMBL CF329844 [ ACAAACTTAGGGGCCGTGGGACAACCGACTGCCTTGGCCATGTGGCGCTGGTTGCTCAGCTCATGAGGAGACTTGGTGAGGTCAAGCCGGTGCTGAAACATTCGGTCATTGCGGTGTTCATTGCCAATGAGGAAAACTCACTTATCACTGGCATTGGTGTCGATGGCCTTGTGAAGGATGGGTTGCCGGATAAGCTCAAGAATGGACCCTTGTTTTGGATAGATACGGCCGATAAGCAGCCTTGCATCGGCACCGGTGGAGTGATTACATGGCATCTGAAGGCAATTGGGAAGCTATTCCACAGTGGCCTCGCACATAAGGCCATAAATGCCATGGAGTTAAATATGGAAGCACTGAAAGAAATACAGACTATGTTTTACAACGATTTCCCTCCACATGAGAAAGAGAAGCTCTATAAGTTTGCTA CCCCATCTACGATCAAA CCAACAA ] [+] EMBL CF329611 [ ACAAACTTAGGGGCCGTGGGACAACCGACTGCCTTGTCC TGTGGCGCTGGTTGCTCAGCTCATGAGGAGACTTGGTGAGGTCAAGCCGGTGCTGAAACATTCGGTCATTGCGGTGTTCATTGCCAATGAGGAAAACTCACTTATCACTGGCATTGGTGTCGATGGCCTTGTGAAGGATGGGTTGCTGGATAAGCTCAAGAATGGACCCTTGTTTTGGATAGATACGGCCGATAAGCAGCCTTGCATCGGCACCGGTGGAGTGATTACATGGCATCTGAAGGCAATTGGGAAGCTATTCCACAGTGGCCTCGCACATAAGGCCATAAATGCCATGGAGTTAAATATGGAAGCACTGAAAGAAATACAGACTATGTTTTACAACGATTTCCCTCCACATGAGAAAGAGAAGCTCTATAAGTTTGCTA CCCCATCTACGATCAAA CCAACAAAATGGAGCTATCCTGGTGGGGGTCTGAATCAAATTCCTGGAG AATGTACAATTTCAGGGGATATAAGGTTGACTCCTTTCTACAGCACGACATCTGTAGTGAAGAAATTACAAGAGTATGTACATGATATAAATGAGAACATTGAAAAGCTTCCTACTCGTGGTCCGGTATCTAAATATGT ] [+] EMBL AU076052 [ TGCTACCCCCATCTACGATCAAACCCAACAAAATGGAGCTATCCTGGTGGGGGTCTGAATCAAATTCCTGGAGAAATGTACAATTTCAGGGGATATAAGGTTGACTCCTTTCTNCAGCACGACATCTGTAGTGAAGAAATTACAAGAGTATGTACATGATATAAATGAGAACATTGAAAAGCTTCCTACTCGTGGTCCGGTATCTAAATATGTTCTTCCTGATGAAAACCTCCGAGGAAGGCTTGAGATCACTATTGATGAAGATATTATGAATGGGGTGGCCTGTAATCTCGAGTCGCGAGGCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGAACCATATTCCATTACTGGGAGTCTGCCCCTGATTAGGGAATTACAGGATGAAGGGTTTGATGTTCAGACTGCTGGGTATGGCTTACTCAAGACATACCACGCAAAGAACGAGTACTGTCTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTCTGAGCATCATTTCACAGTTGGAAGCAGATGTTTGAGTCTTGTTTTAGGGAGGAAAAAAATGAGCGTTCACTGGTACTTATTCCTGTTACTTGTTGCTCTAATAAAGGCACTCACAGTGCAAGCTACCCAAAAaa ] [+] EMBL AU165560 [ AATTCCTGGAG AATGTACAATTTCAGGGGATATAAGGTTGACTCCTTTCTACAGCACGACATCTGTAGTGAAGAAATTACAAGAGTATGTACATGATATAAATGAGAACATTGAAAAGCTTCCTACTCGTGGTCCGGTATCTAAATATGTTCTTCCTGATGAAAACCTCCGAGGAAGGCTTGAGATCACTATTGATGAAGATATTATGAATGGGGTGGCCTGTAATCTCGAGTCGCGAGGCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGAACCATATTCCATTACTGGGAGTCTGCCCCTGATTAGGGAATTACAGGATGAAGGGTTTGATGTTCAGACTGCTGGGTATGGCTTACTCAAGACATACCACGCAAAGAACGAGTACTGTCTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTCTGAGCATCATTTCACAGTTGGAAGCAGATGTTTGAGTCTTGTTTTAGGGAGGAAAAAAATGAGCGTTCACTGGTACTTATTCCTGTTACTTGTTGCTCTAATAAAGGCACTCACAGTGCAAGCTACCCAAAAaa ] [-] EMBL CF329612 [ GTGAAGAAATTACAAGAGTATGTACATGATATAAATGAGAACATTGAAAAGCTTCCTACTCGTGGTCCGGTATCTAAATATGTTCTTCCTGATGAAAACCTCCGAGGAAGGCTTGAGATCACTATTGATGAAGATATTATGAATGGGGTGGCCTGTAATCTCGAGTCGCGAGGCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGAACCATATTCCATTACTGGGAGTCTGCCCCTGATTAGGGAATTACAGGATGAAGGGTTTGATGTTCAGACTGCTGGGTATGGCTTACTCAAGACATACCACGCAAAGAACGAGTACTGTCTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTCTGAGCATCATTTCACAGTTGGAAGCAGATGTTTGAGTCTTGTTTTAGGGAGGAAAAAAATGAGCGTTCACTGGTACTTATTCCTGTTACTTGTTGCTCTAATAAAGGCACTCACAGTGCAAGCTACACTATAAAAGGAACCTCAGGCTAAGGCCACACCTCCTCTCCCACGGTGCAAAGATGCTTTAGGGTGTTCTTAGTTTTTCATGTAAACCCTTGTCATCTTCTATTCTAGTCCTCACATGTTTTCAAACAACATGGCATACAAAATTTACCACTAAAAAAAAAAAAAAAACAC] [-] EMBL CF329845 [ AATTACAAGAGTATGTACATGATATAAATGAGAACATTGAAAAGCTTCCTACTCGTGGTCCGGTATCTAAATATGTTCTTCCTGATGAAAACCTCCGAGGAAGGCTTGAGATCACTATTGATGAAGATATTATGAATGGGGTGGCCTGTAATCTCGAGTCGCGAGGCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGAACCATATTCCATTACTGGGAGTCTGCCCCTGATTAGGGAATTACAGGATGAAGGGTTTGATGTTCATACTGCTGGGTATGGCTTACTCAAGACATACCACGCAAAGAACGAGTACTGTCTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTCTGAGCATCATTTCACAGTTGGAAGCAGATGTTTGAGTCTTGTTTTAGGGAGGAAAAAAATGAGCGTTCACTGGTACTTATTCCTGTTACTTGTTGCTCTAATAAAGGCACTCACAGTGCAAGCTACCCAAAATGGGGAACCTCAGGCTAAGGCCAaaaaa ] consensusID : consensus_15009#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 927 fasta sequence [AGAACGGGGCCTTAGTGTTACAATGCAGCAGAGTATCACTGCACAAATTTTTATATGTTTGCAGGACTAGGGGAAACAAAATAATGGGATCACCAGTATTTCACAAGTCACAACATTCAATAAAGACTGATGCTTCTGTTGTTTCTTCCATATCATTGAAAAATAGTTTTTTAAATTATACTGACCATATTTTTGTACATATTACAGGTTGACTCCTTTCTACAGCACGACATCTGTAGTGAAGAAATTACAAGAGTATGTACATGATATAAATGAGACCATTGAAAAGCTTCCTACTCGTGGTCCGGTATCTAAATATGTTCTTCCTGATGAAAACCTCCGAGGAAGGCTTGAGATCACTATTGATGAAGATATTATGAATGGGGTGGCCTGTAATCTCGAGTCGCGAGGCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGAACCATATTCCATTACTGGGAGTCTG-CCCCTGATTAGGGAATTACAGGATGAAGGGTTTGATGTTCAGACTGCTGGGTATGGCTTA-CTCAAGACATACCA-CGCAAAGAACGAGTACTGTCTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTCTGAGCATCATTTCACAGTTGGAAGCGGATGTTTGAGTCTTGTTTTAGGGAGGAAAAAAATGAGCGTTCACTGGTACTTATTCCTGTTGCTCCTTTTACGAATAAAGGCACTCACAGTGCAAGCTACCCAAAATGAGGAACCTCAGGCTAAGGCCACACCTCCTCTCCCACGGTGCAAAGATGCTTTAGGGTGTTCTTAGTTTTTCATGTAAACCCTTGTCATCTTCTATTCTAGTCCTCACATGTTTTCAAACAACATAACATACAAAATTTACCACTAAACACCCTAAAATGTACAAACTAGTATAAAAAAA] [-] EMBL CB635839 [AGAACGGGGCCTTAGTGTTACAATGCAGCAGAGTATCACTGCACAAATTTTTATATGTTTGCAGGACTAGGGGAAACAAAATAATGGGATCACCAGTATTTCACAAGTCACAACATTCAATAAAGACTGATGCTTCTGTTGTTTCTTCCATATCATTGAAAAATAGTTTTTTAAATTATACTGACCATATTTTTGTACATATTACAGGTTGACTCCTTTCTACAGCACGACATCTGTAGTGAAGAAATTACAAGAGTATGTACATGATATAAATGAGACCATTGAAAAGCTTCCTACTCGTGGTCCGGTATCTAAATATGTTCTTCCTGATGAAAACCTCCGAGGAAGGCTTGAGATCACTATTGATGAAGATATTATGAATGGGGTGGCCTGTAATCTCGAGTCGCGAGGCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGAACCATATTCCATTACTGGGAGTCTG CCCCTGATTAGGGAATTACAGGATGAAGGGTTTGATGTTCAGACTGCTGGGTATGGCTTA CTCAAGACATACCA CGCAAAGAACGAGTACTGTCTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTCTGAGCATCATTTCACAGTTGGAAGCGGATGTTTGAGTCTTGTTTTAGGGAGGAAAAAAATGAGCGTTCACTGGTACTTATTCCTGTTGCTCCTTTTACGAATAAAGGCACTC ] [+] EMBL AU164723 [ TCTGCCCCCTGATTAGGGAATTACAGGATGAAGGGTTTGATGTTCAGACTGCTGGGTATGGCTNACCTCAAGACATCCCACCGCNAAGCACGAGTACTGTCTATTTTCAGATATGNCCCAAGGCTTTCAAGTATTTCTGAGCATCATTTCACAGTTGGAAGCAGATGTTTGAGTCTTGTTTTAGGGAGGAAAAAAATGAGCGTTCACTGGTACTTATTCCTGTTACTTGTTGCTCTAATAAAGGCACTCACAGTGCAAGCTACCCAAAATGAGGAACCTCAGGCTAAGGCCACACCTCCTCTCCCACGGTGCAAAGATGCTTTAGGGTGTTCTTAGTTTTTCATGTAAACCCTTGTCATCTTCTATTCTAGTCCTCACATGTTTTCAAACAACATAACATACAAAATTTACCACTAAACACCCTAAAATGTACAAACTAGTATAAAAAAA] consensusID : consensus_15009#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 746 fasta sequence [TACATATTACAGGTTGACTCCTTTTTACAGGTAAAGCCCATTTTTCATGCATGGACTGTTTTCTCTCATAATTTTGTCTCCACTTCTGCCGAATGTTGTTTTAATTTGCCAGTTGCATGTTGCCATTCATACAGCAGGACTTTTGTAGTGAAGAAATTCCAAGAGTATGTCCATGATATAAATGAGACCATTGAAAAGCTTCCTACTCGGGGTCCGGTATTTAAATATGTTTTTCCTGAGGAAACCCTCCGAGGAAGGCTTGAGATCCCTATTGATGAAGATATTATGAATGGGGGGCCCTGTATTTTGGAGTCGGGAGGCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGACCCATATTCCATTACTGGGAGTTTCCCCCTGATTAGGGAATTCCAGGATGAAGGGTTTGATGTTCAGACTGCGGGGTATGGTTTACTCAAGACATCCCCCGCAAAGAAGGAGTACTGTTTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTTTGAGCATCATTTCCCAGTTGGAAGCAGATGTTTGATTTTTGTTTTGGGGGGGAAAAAAAGGAGCGTTCACTGGTACTTATTCCTGTTACTTGTTGCTTTAATAAAGGCACTCCCAGTGCAAGCTACCCAAAATGAGGAACCTCAGGCTAAGGCCACACCTCCTNTNCCNCGGTGCAAANATGCTTTAGGGTGTTTTTAGTTTTTTAAAAAAAAAAAAAAAAAA] [-] EMBL CB674567 [TACATATTACAGGTTGACTCCTTTTTACAGGTAAAGCCCATTTTTCATGCATGGACTGTTTTCTCTCATAATTTTGTCTCCACTTCTGCCGAATGTTGTTTTAATTTGCCAGTTGCATGTTGCCATTCATACAGCAGGACTTTTGTAGTGAAGAAATTCCAAGAGTATGTCCATGATATAAATGAGACCATTGAAAAGCTTCCTACTCGGGGTCCGGTATTTAAATATGTTTTTCCTGAGGAAACCCTCCGAGGAAGGCTTGAGATCCCTATTGATGAAGATATTATGAATGGGGGGCCCTGTATTTTGGAGTCGGGAGGCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGACCCATATTCCATTACTGGGAGTTTCCCCCTGATTAGGGAATTCCAGGATGAAGGGTTTGATGTTCAGACTGCGGGGTATGGTTTACTCAAGACATCCCCCGCAAAGAAGGAGTACTGTTTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTTTGAGCATCATTTCCCAGTTGGAAGCAGATGTTTGATTTTTGTTTTGGGGGGGAAAAAAAGGAGCGTTCACTGGTACTTATTCCTGTTACTTGTTGCTTTAATAAAGGCACTCCCAGTGC ] [+] EMBL AU181905 [ tnGGCCACGTGGAACCATATTCCATTANTGGGAGTTTGCCCCTGATTAGGGAATTACAGGATGAAGGGTTTGATGTTCAGACTGCTGGGTATGGCTTACTCAAGACATACCACGCAAAGAACGAGTACTGTNTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTTTGAGCATCATTTNACAGTTGGAAGCAGATGTTTGAGTNTTGTTTTAGGGAGGAAAAAAATGAGCGTTCACTGGTACTTATTCCTGTTACTTGTTGCTNTAATAAAGGCACTCACAGTGCAAGCTACCCAAAATGAGGAACCTCAGGCTAAGGCCACACCTCCTNTNCCNCGGTGCAAANATGCTTTAGGGTGTTTTTAGTTTTTTAAAAAAAAAAAAAAAAAA] consensusID : consensus_15009#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [GACAATGAAGACAAGGACAAACTTAGGGGCCGTGGGACAACCGACTGCCTTGGCCATGTGGCGCTGGTTGCTCAGCTCATGATGATACTTGGTGAGGTCAAGCCGGTGCTGAAACATTCGGTCATTGCGGTGTTCATTGCCAATGAGGAAAACTCACTTATCACTGGCATTGGTGTCGATGGCCTTGTGAAGGATGGGTTGCTGGATAAGCTCAAGAATGGACCCTTGTTTTGGATAGATACGGCCGATAAGCAGCCTTGCATCGGCACCGGTGGAGTGATTACATGGCATCTGAAGGCAATTGGGAAGCTATTCCACAGTGGCCTCGCACATAAGGCCATAAATGCCATGGAGTTAAATATGGAAGCACTGAAAGAAATACAGACTATGTTTTACAACGATTTCCCTCCACATGAGAAAGAGAAGCTCTATAAGTTTGCTACCCCATCTACGATCAAACCAACAAAATGGAGCTGTATGTTCAAGTTTTACTTGTGTTTTCTAATGTTACAACTTTTTAGTTGTGTTTCCTAATGTTAAAGAAAACCACTGTG] [+] EMBL CF323058 [GACAATGAAGACAAGGACAAACTTAGGGGCCGTGGGACAACCGACTGCCTTGGCCATGTGGCGCTGGTTGCTCAGCTCATGATGATACTTGGTGAGGTCAAGCCGGTGCTGAAACATTCGGTCATTGCGGTGTTCATTGCCAATGAGGAAAACTCACTTATCACTGGCATTGGTGTCGATGGCCTTGTGAAGGATGGGTTGCTGGATAAGCTCAAGAATGGACCCTTGTTTTGGATAGATACGGCCGATAAGCAGCCTTGCATCGGCACCGGTGGAGTGATTACATGGCATCTGAAGGCAATTGGGAAGCTATTCCACAGTGGCCTCGCACATAAGGCCATAAATGCCATGGAGTTAAATATGGAAGCACTGAAAGAAATACAGACTATGTTTTACAACGATTTCCCTCCACATGAGAAAGAGAAGCTCTATAAGTTTGCTACCCCATCTACGATCAAACCAACAAAATGGAGCTGTATGTTCAAGTTTTACTTGTGTTTTCTAATGTTACAACTTTTTAGTTGTGTTTCCTAATGTTAAAGAAAACCACTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15009#0 GTAGTTTGGGAAGGTGTTTTCTCTCACTCAATCTCCCAGCAACGAATAGCAACCTAGGTT 60 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ------------------------------------------------------------ consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 CCCATCGCAACTGACCGATCCCCAGCCGCCGCCGCCGCCGCCGCCGCCGCTCAAGGAAGC 120 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ------------------------------------------------------------ consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 GCATCAGATGGCATCGCCGTCGCTCAGGGACGCCGTGGGCGGCCTCGACCGCGACCCCTT 180 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ------------------------------------------------------------ consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 CGTCTCCCTCCTCGGGAAGCTCATCGGCGAGTCCCGCCGCCTGCAGAACGACCCGCCGGC 240 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ------------------------------------------------------AGAACG 6 consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 CCTCGTCCCGCAGGAGGACCTCGTGGCGCAGCACGTGGTCGACGCGCTCCTCCCGGTGTC 300 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 GGGCCTTAGTGTTACAATGCAGCAGAGTATCACTGCACAAATTTTTATATGTTTGCAGGA 66 consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 CATGGAGACCGGGGGCGGCCCGCTCGTCGTGCGGAAGGTGAGCTACGCCGAGGGCCGGAG 360 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 CTAGGGGAAACAAAATAATGGGATCACCAGTATTTCACAAGTC-ACAACATTCAATAAAG 125 consensus_15009#2 ----------------------------TACATATTACAGGTTGACTCCTTTTTACAGGT 32 consensus_15009#0 CAACGTCATCGTCGAGTACCCCGGCACCGTCCCCGGCCGCGCCATCTCCTTCGTCGGCAT 420 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ACTGAT-GCTTCTGTTGTTTCTTCCATATCATTGAAAAATAGTTTTTTAAATTATACTGA 184 consensus_15009#2 AAAGCCCATTTTTCATGCATGGACTGTTTTCTCTCATAATTTTGTCTCCACTTCTGCCGA 92 consensus_15009#0 GCACATGGACGTCGTCCCCGCCAACCCCGACGAATGGGATTTCGATCCCTTCTCACTAAC 480 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 CCATATTTTTG---TACATATTACAGGTTGACTCCTTTCTACAGCACGACATCTGTAGTG 241 consensus_15009#2 ATGTTGTTTTAATTTGCCAGTTGCATGTTG--CCATTCATACAGCAGGACTTTTGTAGTG 150 consensus_15009#0 GTTTGACAGTGAAGACAAGGACA-AACTTA---GGGGCCGTGGGACAACCGACTGCCTTG 536 consensus_15009#3 ----GACAATGAAGACAAGGACA-AACTTA---GGGGCCGTGGGACAACCGACTGCCTTG 52 consensus_15009#1 AAGAAATTACAAGAGTATGTACATGATATAAATGAGACCATTGAAAAGCTTCCTACTCGT 301 consensus_15009#2 AAGAAATTCCAAGAGTATGTCCATGATATAAATGAGACCATTGAAAAGCTTCCTACTCGG 210 * * * * ** * ** * * ** * * * * * ** * consensus_15009#0 GCCATGTGGCGCTGGTTGCTCAGCTCATGAGGAGACTTGGTGAGG------TCAAGCCGG 590 consensus_15009#3 GCCATGTGGCGCTGGTTGCTCAGCTCATGATGATACTTGGTGAGG------TCAAGCCGG 106 consensus_15009#1 GGTCCG-GTATCTAAATATGTTCTTCCTGATGAAAACCTCCGAGGAAGGCTTGAGATCAC 360 consensus_15009#2 GGTCCG-GTATTTAAATATGTTTTTCCTGAGGAAACCCTCCGAGGAAGGCTTGAGATCCC 269 * * * * * ** *** ** * **** * * * consensus_15009#0 TGCTGA--AACATTCGGTCATTGCGGTGTTCATTGCCAATGAG--GAAAACTCACTTATC 646 consensus_15009#3 TGCTGA--AACATTCGGTCATTGCGGTGTTCATTGCCAATGAG--GAAAACTCACTTATC 162 consensus_15009#1 TATTGATGAAGATATTATGAATGGGGTGGCCTGTAATCTCGAGTCGCGAGGCTTTCAAGC 420 consensus_15009#2 TATTGATGAAGATATTATGAATGGGGGGCCCTGTATTTTGGAGTCGGGAGGCTTTCAAGC 329 * *** ** ** * * ** ** * * * *** * * * * consensus_15009#0 ACTG-GCATTGGTGTCGATGGCCTTGTGAAGGATGGGTTGCTGGATAAGCTCA---AGAA 702 consensus_15009#3 ACTG-GCATTGGTGTCGATGGCCTTGTGAAGGATGGGTTGCTGGATAAGCTCA---AGAA 218 consensus_15009#1 ATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGAACCATATTCCATTACTGGGAG 480 consensus_15009#2 ATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGACCCATATTCCATTACTGGGAG 389 * * *** * ** * **** * * * * ** * * ** consensus_15009#0 TGGACCCTTGTTTTGGATAGATACGGCCGATAAGCAGCCTTGCATCGGCACCGGTGGA-G 761 consensus_15009#3 TGGACCCTTGTTTTGGATAGATACGGCCGATAAGCAGCCTTGCATCGGCACCGGTGGA-G 277 consensus_15009#1 TCTGCCCCTGATTAGGG-AATTACAG--GATGAAGGGTTTGATGTTCAGACTGCTGGGTA 537 consensus_15009#2 TTTCCCCCTGATTAGGG-AATTCCAG--GATGAAGGGTTTGATGTTCAGACTGCGGGGTA 446 * *** ** ** ** * * * * *** * * * * ** * ** consensus_15009#0 TGATTA---CATGGCATCTGAAGGCAATTGGGAAGCTATTCCACAGTGGCCTCGCACATA 818 consensus_15009#3 TGATTA---CATGGCATCTGAAGGCAATTGGGAAGCTATTCCACAGTGGCCTCGCACATA 334 consensus_15009#1 TGGCTTACTCAAGACATACCACGCAAAGAACGAGTACTGTCTATTTTCAGATATGGCCCA 597 consensus_15009#2 TGGTTTACTCAAGACATCCCCCGCAAAGAAGGAGTACTGTTTATTTTCAGATATGGCCCA 506 ** * ** * *** * ** ** * * * * * * consensus_15009#0 AGGCCAT-AAATGCCATGGAGTTAAATATGGAAGCACTGAA-AGAAATACAGACTATGTT 876 consensus_15009#3 AGGCCAT-AAATGCCATGGAGTTAAATATGGAAGCACTGAA-AGAAATACAGACTATGTT 392 consensus_15009#1 AGGCTTTCAAGTATTTCTGAGCATCATTTCACAGTTGGAAGCGGATGTTTGAGTCTTGTT 657 consensus_15009#2 AGGCTTTCAAGTATTTTTGAGCATCATTTCCCAGTTGGAAGCAGATGTTTGATTTTTGTT 566 **** * ** * *** ** * ** * ** * **** consensus_15009#0 TT-------ACAACGATTTCCCTCCACATGAGAAAGA-----GAAGCTCTATAAGTTTGC 924 consensus_15009#3 TT-------ACAACGATTTCCCTCCACATGAGAAAGA-----GAAGCTCTATAAGTTTGC 440 consensus_15009#1 TTAGGGAGGAAAAAAATGAGCGTTCAC-TGGTACTTATTCCTGTTGCTCCTTTTACGAAT 716 consensus_15009#2 TTGGGGGGGAAAAAAAGGAGCGTTCAC-TGGTACTTATTCCTGTTACTTGTTGCTTTAAT 625 ** * ** * * * *** ** * * * ** * consensus_15009#0 TACCCCATCTACGAT-CAAACCAAC-AAAATGGAGCTATCCTGGTGGGGGTCTGAA-TCA 981 consensus_15009#3 TACCCCATCTACGAT-CAAACCAAC-AAAATGGAGCTGTAT--GTTCAAGTTTTAC-TTG 495 consensus_15009#1 AAAGGCACTCACAGTGCAAGCTACCCAAAATGAGGAACCTCAGGCTAAGGCCACACCTCC 776 consensus_15009#2 AAAGGCACTCCCAGTGCAAGCTACCCAAAATGAGGAACCTCAGGCTAAGGCCACACCTCC 685 * ** * * *** * * * ****** * * * * * consensus_15009#0 AATTCCTGGAGAATGTACAATTTCAGGGGATATAAGGTTGACTC-CTTTCTACAGCACGA 1040 consensus_15009#3 TGTTTTCTAATGTTACAACTTTTTAG------TTGTGTTTCCTA-ATGT-TAAAGAA-AA 546 consensus_15009#1 TCTCCCACGGTGCAAAGATGCTTTAGGGTGTTCTTAGTTTTTCATGTAAACCCTTGTCAT 836 consensus_15009#2 TNTNCCNCGGTGCAAANATGCTTTAGGGTGTTTTTAGTTTTTTAAAAAAAAAAAAAAAAA 745 * ** ** *** consensus_15009#0 CATCTGTAGTGAAGAAATTACAAGAGTATGTACATGATATAAATGAGAACATTGAAAAGC 1100 consensus_15009#3 CCACTGTG---------------------------------------------------- 554 consensus_15009#1 CTTCTATTCTAGTCCTCACATGTTTTCAAACAACATAACATACAAAATTTACCACTAAAC 896 consensus_15009#2 A----------------------------------------------------------- 746 consensus_15009#0 TTCCTACTCGTGGTCCGGTATCTAAATATGTTCTTCCTGATGAAAACCTCCGAGGAAGGC 1160 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ACCCTAAAATGTACAAACTAGTATAAAAAAA----------------------------- 927 consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 TTGAGATCACTATTGATGAAGATATTATGAATGGGGTGGCCTGTAATCTCGAGTCGCGAG 1220 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ------------------------------------------------------------ consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 GCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGAACCATATTCCA 1280 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ------------------------------------------------------------ consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 TTACTGGGAGTCTGCCCCTGATTAGGGAATTACAGGATGAAGGGTTTGATGTTCAGACTG 1340 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ------------------------------------------------------------ consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 CTGGGTATGGCTTACTCAAGACATACCACGCAAAGAACGAGTACTGTCTATTTTCAGATA 1400 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ------------------------------------------------------------ consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 TGGCCCAAGGCTTTCAAGTATTTCTGAGCATCATTTCACAGTTGGAAGCAGATGTTTGAG 1460 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ------------------------------------------------------------ consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 TCTTGTTTTAGGGAGGAAAAAAATGAGCGTTCACTGGTACTTATTCCTGTTACTTGTTGC 1520 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ------------------------------------------------------------ consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 TCTAATAAAGGCACTCACAGTGCAAGCTACCCAAAATGAGGAACCTCAGGCTAAGGCCAC 1580 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ------------------------------------------------------------ consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 ACCTCCTCTCCCACGGTGCAAAGATGCTTTAGGGTGTTCTTAGTTTTTCATGTAAACCCT 1640 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ------------------------------------------------------------ consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 TGTCATCTTCTATTCTAGTCCTCACATGTTTTCAAACAACATAACATACAAAATTTACCA 1700 consensus_15009#3 ------------------------------------------------------------ consensus_15009#1 ------------------------------------------------------------ consensus_15009#2 ------------------------------------------------------------ consensus_15009#0 CTAAAAAAAAAAAAAAAACAC 1721 consensus_15009#3 --------------------- consensus_15009#1 --------------------- consensus_15009#2 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||