These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1223 fasta sequence [TGCACTTCACAGTTCACACCACCTTCCTTCCTTCCCGACTCCCCACACCGGCCGGTCTCCTTCTCGCTGCAGGGAGAGAGAGCTCGAGCTCTTCTCTGCTGCTGCTGCTGCCA-TGGCGATTCCGTTGCTGCTGCTGCTCTTGCTGGCCATGTCCACAGGCTCAGATGGGGCGTTCTGCGTGTGCAAGCCCGACCAGAGCCCGGCGGCGATGCAGAAGGCCATCGACTACGCGTGCTGGCGCGGCGCCGAC-TGCACCCAGATCATGCAGTCCGGCGCGTGCTACCAGCCGAGCACCATCGTCGCGCACT-GCTCCTACGCCACCAACTCCTAC-TTCCAGAAGAACAGCCCCATCGGCGCCACCTGCGACTTCGGC-GGCGTCGCCACCCTCACCAACACCGACCCCAGCTCCGGCACCTGCAAGTACCCGGCCACCGCTAGCGGCGTAGGCACCGGAATGGGAACCGGAACCAGCACCGGCACTGGCACTGGAGTTGGCACCGGCGGCACCGGCACTGGTGGCGCAGGCGTCGGCGCAGGC-ACCGGCAC-AGGCGTTGGCACA-GGAACCGGCA-CCGGCGCAGGCAT-GGGCACCGGTGCTGGTG-CCGGC-ACCGGGAT-CACGACCCCGGGATCGACCACCGGCACTCAGGGAGGCGCCCTGAGCCCACCGTTTGGCGGCGCATATGGCCCGTCGGCCGGCG-CCATGAACCCCGACTACAACGAGGCCGCGCCGGCGCGCTCCCAGCTGGCCGCCGCCACCTCCGTCCTCCTCGCCGCCGCACCATTCCTGTTCCATCTCATCTAGAGCCACACAAGGGGGCAGTGGATTCCGTCTCGTCGGTGGTGGGGGCGCACGGCGCCGGCCGGAGTTTGGTGGGCATTGCAATGCAGCGGCGTTGCCGGCGTTGGTGCTTTGTCTCGCCCGCGCTTTCCGGCCTGTGCCGCCACCCCTGCTGGTTTTGATCGATCATCAGTGTATTCAGTAGTGGTACTGGGAGTACTCCTTCAGTAGTAGCCTACTCTCTCTGTTATTCAACTGACGAACTCTTCTCCCTCGTGTGCCGGTGACTACCCATCATACCATGTGGTGTGTTGTTTGTACCGGTGCAAATGCGTAGGTGAAGAGAGATCTAGAGATATTCTTTCGTGGTAGTAGCAGTTTGTGTGTGTTTCGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAA] [+] EMBL AK101753 [TGCACTTCACAGTTCACACCACCTTCCTTCCTTCCCGACTCCCCACACCGGCCGGTCTCCTTCTCGCTGCAGGGAGAGAGAGCTCGAGCTCTTCTCTGCTGCTGCTGCTGCCA TGGCGATTCCGTTGCTGCTGCTGCTCTTGCTGGCCATGTCCACAGGCTCAGATGGGGCGTTCTGCGTGTGCAAGCCCGACCAGAGCCCGGCGGCGATGCAGAAGGCCATCGACTACGCGTGCTGGCGCGGCGCCGAC TGCACCCAGATCATGCAGTCCGGCGCGTGCTACCAGCCGAGCACCATCGTCGCGCACT GCTCCTACGCCACCAACTCCTAC TTCCAGAAGAACAGCCCCATCGGCGCCACCTGCGACTTCGGC GGCGTCGCCACCCTCACCAACACCGACCCCAGCTCCGGCACCTGCAAGTACCCGGCCACCGCTAGCGGCGTAGGCACCGGAATGGGAACCGGAACCAGCACCGGCACTGGCACTGGAGTTGGCACCGGCGGCACCGGCACTGGTGGCGCAGGCGTCGGCGCAGGC ACCGGCAC AGGCGTTGGCACA GGAACCGGCA CCGGCGCAGGCAT GGGCACCGGTGCTGGTG CCGGC ACCGGGAT CACGACCCCGGGATCGACCACCGGCACTCAGGGAGGCGCCCTGAGCCCACCGTTTGGCGGCGCATATGGCCCGTCGGCCGGCG CCATGAACCCCGACTACAACGAGGCCGCGCCGGCGCGCTCCCAGCTGGCCGCCGCCACCTCCGTCCTCCTCGCCGCCGCACCATTCCTGTTCCATCTCATCTAGAGCCACACAAGGGGGCAGTGGATTCCGTCTCGTCGGTGGTGGGGGCGCACGGCGCCGGCCGGAGTTTGGTGGGCATTGCAATGCAGCGGCGTTGCCGGCGTTGGTGCTTTGTCTCGCCCGCGCTTTCCGGCCTGTGCCGCCACCCCTGCTGGTTTTGATCGATCATCAGTGTATTCAGTAGTGGTACTGGGAGTACTCCTTC ] [+] EMBL AU065462 [ ACCTTCCTTCCTTCCCGACTCCCCACACCGGCCGGTCTCCTTCTCGCTGCAGGGAGAGAGAGCTCGAGCTCTTCTCTGCTGCTGCTGCTGCCA TGGCGATTCCGTTGCTGCTGCTGCTCTTGCTGGCCATGTCCACAGGCTCAGATGGGGCGTTCTGCGTGTGCAAGCCCGACCAGAGCCCGGCGGCGATGCAGAAGGCCATCGACTACGCGTGCTGGCGCGGCGCCGAC TGCACCCAGATCATGCAGTCCGGCGCGTGCTACCAGCCGAGCACCATCGTCGCGCACT GCTCCTACGCNANCAACTCCTAC ] [+] EMBL OSR15361B [ ACCTTCCTTCCTTCCCGACTCCCCACACCGGCCGGTCTCCTTCTCGCTGCAGGGAGAGAGAGCTCGAGCTNTTCTCTGCTGCTGGNNNTGNCACTGGCGATTCCGTTGCTGCTGCTGCTCTTGCTGGCCATGTCCACAGGCTCAGATGGGGCGTTCTGCGTGTGCAAGCCCGACCAGAGCCCGGCGGCGATGCAGAAGGCCATCGACTACGCGTGCTGGCGC ] [+] EMBL OSS1239A [ TCCCCACACCGGCCGGTCTCCTTCTCGCTGCAGGGAGAGAGAGCTCGAGCTCTTCTCTGCTGCTGCTGCTGCCA TGGCGATTCCGTTGCTGCTGCTGCTCTTGCTGGCCATGTCCACAGGCTCAGATGGGGCGTTCTGCGTGTGCAAGCCCGACCAGAGCCCGGCGGCGATGCAGAAGGCCATCGACTACGCGTGCTGGCGCGGCGCCGAC TGCACCCAGATCATGCAGTCCGGCGCGTGCTACCAGCCGAGCACCATCGTCGCGCAC ] [+] EMBL C27583 [ CACACCGGCCGGTCTCCTTCTCGCTGCAGGGAGAGAGAGCTCGAGCTCTTCTCTNCTGCTGCTGCTGCCA TGGCGATTCCGTTGCTGCTGCTGCTCTTGCTGGCCATGTCCACAGGCTCAGATGGGGCGTTCTGCGTGTGCAAGCCCGACCAGAGCCCGGCGTCNGTGCAGAAGGCCATCGACTACGCGTGCTGGCG GGCG CGACTTGCACCCAGATCATGCAGTCCGGCGCGTGCTACCAGCCGAGCACCATCGTCGCGCACTNGCTCCTACGGCACCAACTNCTACTTTCCAGAAGAACAGCCCCATCNGCGTCACCTTCGACTTCGGCNGGCGT G CACCn ] [+] EMBL AU085746 [ GGCGCAGGCAACCGGTACAAGGCGTTGGCACAGGGAACCGGNACCCGGCGCAGGTATGGGGCACCGGTNCTGGTGCCCGGCAACCGGGATCCACGACCCCGGGATCGACCACCGGTACTCAGGGAGGCGCCCTGAGCCCACCGTTTGGCGGCGCATATGNCCCGTCGGCCGGCGCCCATGAACCCCGACTACAACGAGGCCGCGCCGGCGCGCTCCCAGCTGGCCGCCGCAACCTCCGTCCTCCTCGCCGCCGCACCATTCCTGTTCCATCTCATCTAGAGCCCCACAAGGGGGCAGTGGATTCCGTCTCGTCGGTGGTGGGGGCGCACGGCGCCGGCCGGAGTTTGGTGGGCATTGCAATGCAGCGGCGTTGCCGGCGTTGGTGCTTTGTCTCGCCCGCGCTTTCCGGCCTGTGCCGCCACCCCTGCTGGTTTTGATCGATCATCAGTGTATTCAGTAGTGGTACTGGGAGTACTCCTTCAGTAGTAGCCTACTCTCTCTGTTATTCAACTGACGAACTCTTCTCCCTCGTGTGCCGGTGACTACCCATCATACCATGTGGTGTGTTGTTTGTACCGGTGCAAATGCGTAGGTGAAGAGAGATCTAGAGATATTCTTTCGTGGTAGTAGCAGTTTGTGTGTGTTTCGGACAAAAAAAAAAAAA ] [+] EMBL CA757819 [ GCCGCCACCGCCGTCCTCCTCGCCGCCGCACCATTCCTGTTCCATCTCATCTAGAGCCACACAAGGGGGCAGTGGATTCCGTCTCGTCGGTGGTGGGGGCGCATGGCGCCGGCCGGAGTTTGGTGGGCATTGCAATGCAGCGGCGTTGCCGGCGTTGGTGCTTTGTCTCGCCCGCGCTTTCCGGCCTGTGCCGCCACCCCTGCTGGTTTTGATCGATCATCAGTGTATTCAGTAGTGGTACTGGGAGTACTCCTTTAGTAGTAGCCTACTCTCTCTGTTATTCAACTGACGAACTCTTCTCCCTCGTGTGCCGGTGGCTACCCATCATACCATGTGGTGTGTTGTTTGTACCGGTGCAAATGCGTAGGTGAAGAGAGATCTAGAGATATTCTTTCGTGGTAGTAGCAGTTTGTGTGTGTTTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAA] [+] EMBL CF327302 [ CCGCCACCTCCGTCCTCCTCGCCGCCGCACCATTCCTGTTCCATCTCATCTAGAGCCACACAAGGGGGCAGTGGATTCCGTCTCGTCGGTGGTGGGGGCGCACGGCGCCGGCCGGAGTTTGGTGGGCATTGCAATGCAGCGGCGTTGCCGGCGTTGGTGCTTTGTCTCGCCCGCGCTTTCCGGCCTGTGCCGCCACCCCTGCTGGTTTTGATCGATCATCAGTGTATTCAGTAGTGGTACTGGGAGTACTCCTTCAGTAGTAGCCTACTCTCTCTGTTATTCAACTGACGAACTCTTCTCCCTCGTGTGCCGGTGACTACCCATCATACCATGTGGTGTGTTGTTTGTACCGGTGCAAATGCGTAGGTGAAGAGAGATCTAGAGATATTCTTTCGTGGTAGTAGCAGTTTGTGTGT NAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU173169 [ CCTCCGTCCTCCTCGCCGCCGCACCATTCCTGTTCCATCTCATCTAGAGCCACACAAGGGGGCAGTGGATTCCGTCTCGTCGGTGGTGGGGGCGCACGGCGCCGGCCGGAGTTTGGTGGGCATTGCAATGCAGCGGCGTTGCCGGCGTTGGTGCTTTGTCTCGCCCGCGCTTTCCGGCCTGTGCCGCCACCCCTGCTGGTTTTGATCGATCATCAGTGTATTCAGTAGTGGTACTGGGAGTACTCCTTCAGTAGTAGCCTACTCTCTCTGTTATTCAACTGACGAACTCTTCTCCCTCGTGTGCCGGTGACTACCCATCATACCATGTGGTGTGTTGTTTGTACCGGTGCAAATGCGTAGGTGAAGAGAGATCTAGAGATATTCTTTCGTGGTAGTAGCAGTTTGTGTGTGTTTCGGACAAAAAAA ] [+] EMBL AU095548 [ tCCGGAGTTTGGTGGGCATTGCAATGCAGC GCGTTGCCGGCGTTGGTGCTTTGTCTCGCCCGCGCTTTCCGGCCTGTGCCGCCACCCCTGCTGGTTTTGATCGATCATCAGTGTATTCAGTAGTGGTACTGGGAGTACTCCTTCAGTAGTAGCCTACTCTCTCTGTTATTCAACTGACGAACTCTTCTCCCTCGTGTGCCGGTGACTACCCATCATACCATGTGGTGTGTTGTTTGTACCGGTGCAAATGCGTAGGTGAAGAGAGATCTAGAGATATTCTTTCGTGGTAGTAGCAGTTTGTGTGTGTTTNGGACAANAAnn ] consensusID : consensus_15070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 658 fasta sequence [NANTNGACCTTCTCGGCANNTTTNAGGNAAGNCACCCCTGAAANCCNCCCGTTTTTGGNGGCGNATATTGCCCCGTCCGGNCCGGGCGCCNATGAACCCCGACTAAANTGAGNCCCCCNCCGGTGCGTTTNTNANNTNNCCGCCGCCACNTCNGTCCTTCNTCGNCGCCGNACNATTCCCTNTTCCNATCTCATNTAGAGCCNCACAAGGGGGCANTGGATTCCCGTCNCGTCGGTNNGTNNGGGGCNCACGGCGCCGGCCGGAGTTTGGTGGGCATTTGCAATGCANGCGGCGTTGCCGGCGTTGGTGCTTTGTCTCGCCCGCGCTTTACCGGCCTGTGCCGCCACCCCTGCTGGTTTTGATCGATCATCAGTGTATTCAGTAGTGGTACTGGGAGTACTCCTTCAGTAGTAGCCTACTCTCTCTGTTATTCAACTGACGAACTCTTCTCCCTCGTGTGCCGGTGACTACCCATCATACCATGTGGTGTGTTGTTTGTACCGGTGCAAATGCGTAGGTGAAGAGAGATCTAGAGATATTCTTTCGTGGTAGTAGCAGTTTGTGTGTGTTTCGGACATATCTGTGTTACTGTTCAAAAAAAAANGNGTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030214 [NANTNGACCTTCTCGGCANNTTTNAGGNAAGNCACCCCTGAAANCCNCCCGTTTTTGGNGGCGNATATTGCCCCGTCCGGNCCGGGCGCCNATGAACCCCGACTAAANTGAGNCCCCCNCCGGTGCGTTTNTNANNTNNCCGCCGCCACNTCNGTCCTTCNTCGNCGCCGNACNATTCCCTNTTCCNATCTCATNTAGAGCCNCACAAGGGGGCANTGGATTCCCGTCNCGTCGGTNNGTNNGGGGCNCACGGCGCCGGCCGGAGTTTGGTGGGCATTTGCAATGCANGCGGCGTTGCCGGCGTTGGTGCTTTGTCTCGCCCGCGCTTTACCGGCCTNTGCCGCCACCCCTGCTGGTTTTGATCGATCATCAGTGTATTCAGTAGTGGTACTGGGAGTACNCCTTCAGTAGTAGCCTACTCTCTCTGTTATTCAACTGANGAACTCTTCTCCCTCGTGTNCCGGTGACTACCCATCATNCCNTGTGGTGTGTTGTTTGTNCCGGTGCAAATGCGTAGGTGAAGAGAGATCTAGAGATATTNTTTCGTGGTAGTAGCAGTTTGTGTGTGTTTCGGACATATCTGTGTTNCTGTTCNCCGTGTGNNGNGTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU184471 [ ACGGCGCCGGCCGGAGTTTGGTGGGCA TTGCAATGCA GCGGCGTTGCCGGCGTTGGTGCTTTGTCTCGCCCGCGCTTT CCGGCCTGTGCCGCCACCCCTGCTGGTTTTGATCGATCATCAGTGTATTCAGTAGTGGTACTGGGAGTACTCCTTCAGTAGTAGCCTACTCTCTCTGTTATTCAACTGACGAACTCTTCTCCCTCGTGTGCCGGTGACTACCCATCATACCATGTGGTGTGTTGTTTGTACCGGTGCAAATGCGTAGGTGAAGAGAGATCTAGAGATATTCTTTCGTGGTAGTAGCAGTTTGTGTGTGTTTCGGACATATCTGTGTTACTGTTCAAAAAAAAA ] [+] EMBL AU184470 [ CGGCCTGTGCCGCCACCCCTGCTGGTTTTGATCGATCATCAGTGTATTCAGTAGTGGTNCTGGGAGTNCTCCTTCAGTAGTAGCCTACTCTCTCTGTTATTCAACTGNCGAACTCTTNTCCCTCGTGTGCCGGTGACTACCCATCATACCATGTGGTGTGTTGTTTGTACCGGTGCAAATGCGTAGGTGAAGAGAGATCTAGAGATATTCTTTCGTGGTAGTAGCAGTTTGTGTGTGTTTCGGACATATCTGTGTTACTGTTCAAAAAAAAA ] consensusID : consensus_15070#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 557 fasta sequence [GCGGGCAGATGGGGCGTTCTGCGTGTTCAAGCCCNACCAGAGTCCGNCGGCGATGCAGAAGGCAATTGACTACGCGTGTTGGCGCAGCGCCGACTGCACCCAGATCATGCAGTCCGGAGCGTGCTACCAGCCCAGCACCATCGGCGGCGGGGGCGAAATCCTCCGGCGCAGACGCGAGCAGACGGCGCACGACGGGGCCGAGCGGACGGCGCGCGGTGGGGCCGAGATGTTGGCGGCGATGGCGGGGTGGTCGACGAGGAGGACGACGACTGAGGAGGCGGGTCCGGGAGCCAACGCTGTCGTCGTCGGGCCCAGCAGCTGCAAGCAACGCCCTCGTCATCGGGCCCTCGCCGCCGCGCCCTTGCCGCCGAACGCCGCCGTCGCTAGCACCGAGAAGAAGAAAGGAGGAGAGAGATGTTAGAGGGAGAGGATGACTAGGCTGCCATATGTACGCCACGTCAGCGAAAACCACCCTTAAAATAACCGAGAGAGTTATTTTAGACGATTTTAATAATTCGAGAAATCATCATATCTGGTTTTGTGAAAAAAAAAAAAAA] [+] EMBL AU082989 [GCGGGCAGATGGGGCGTTCTGCGTGTTCAAGCCCNACCAGAGTCCGNCGGCGATGCAGAAGGCAATTGACTACGCGTGTTGGCGCAGCGCCGACTGCACCCAGATCATGCAGTCCGGAGCGTGCTACCAGCCCAGCACCATCGGCGGCGGGGGCGAAATCCTCCGGCGCAGACGCGAGCAGACGGCGCACGACGGGGCCGAGCGGACGGCGCGCGGTGGGGCCGAGATGTTGGCGGCGATGGCGGGGTGGTCGACGAGGAGGACGACGACTGAGGAGGCGGGTCCGGGAGCCAACGCTGTCGTCGTCGGGCCCAGCAGCTGCAAGCAACGCCCTCGTCATCGGGCCCTCGCCGCCGCGCCCTTGCCGCCGAACGCCGCCGTCGCTAGCACCGAGAAGAAGAAAGGAGGAGAGAGATGTTAGAGGGAGAGGATGACTAGGCTGCCATATGTACGCCACGTCAGCGAAAACCACCCTTAAAATAACCGAGAGAGTTATTTTAGACGATTTTAATAATTCGAGAAATCATCATATCTGGTTTTGTGAAAAAAAAAAAAAA] [+] EMBL C74192 [ GGCAGATGGGGCGTTCTGCGTGTTCAAGCCCGACCAGAGTCCGGCGGCGATGCAGAAGGCAATTGACTACGCGTGTTGGCGCA NNCCGACTGCACCCAGATCATGCAGTCCGGAGCGTGCTACCAGCCCAGCACCATCGGCGGCGGGGGCGAAATCCTCCGGCGCAGACGCGAGCAGACGGCGCACGACGGGGCCGAGCGGACNGCGCGCGGTGGGGCCGAGATGTTGGCGGCGATGGCGGGGTGGTCGA ] consensusID : consensus_15070#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [CGCCACCTCCGTCTTCTTTGCCGCGGCACCATTCTTGTTCCATTTTATTTAGAGCCCCACAAGGGGGCAGTGGATTCCGTTTTGTCGGTGGTGGGGGCGCACGGCCCCGGCCGGAGTTTGGTGGGCATTGCAAAACAACGGGGTTGCCGGGGTTGGTGCTTTGTTTTGCCCGGGCTTTCCGGCCTGTGCCGCCACCCCTGGTGGTTTTGATCGATCATCAGGGTATTCAGTAGTGGGACTGGGAGGACTCCTTCAGTAGTAGCCTACTTTTTTTGTTATTCAAATGACGAACTTTTTTCCCTTGTGGGCCGGTGACTACCCATCAAACCATGTGGTGTGTTGTTTGTACCGGGGCAAATGGGTAGGTGAAAAAAGATTTAAAAATATTTTTTTGTGGTAGAAGCAGTTTGTGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF327301 [CGCCACCTCCGTCTTCTTTGCCGCGGCACCATTCTTGTTCCATTTTATTTAGAGCCCCACAAGGGGGCAGTGGATTCCGTTTTGTCGGTGGTGGGGGCGCACGGCCCCGGCCGGAGTTTGGTGGGCATTGCAAAACAACGGGGTTGCCGGGGTTGGTGCTTTGTTTTGCCCGGGCTTTCCGGCCTGTGCCGCCACCCCTGGTGGTTTTGATCGATCATCAGGGTATTCAGTAGTGGGACTGGGAGGACTCCTTCAGTAGTAGCCTACTTTTTTTGTTATTCAAATGACGAACTTTTTTCCCTTGTGGGCCGGTGACTACCCATCAAACCATGTGGTGTGTTGTTTGTACCGGGGCAAATGGGTAGGTGAAAAAAGATTTAAAAATATTTTTTTGTGGTAGAAGCAGTTTGTGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15070#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [TCGANCTCTTCTCTGCTGCTGCTGCTGCCATGGCGATTCCGTTGCTGCTGCTGCTCTTGCTGGCCATGTCCACAGGCTCAGATGGGGCGTTCTGCGTGTGCAAGCCCGACCAGAGCCCGGCGGCGATGCAGAAGGCCATCGACTACGCGTGCTGGCGCGGCGCCGACTNGCACCCAGATCATGCAGTCCGGCGCGTGCTACCAGCCGAGCACCATCGTCGCGCACTGCTCCTACGCCACCAACTCCTACTTCCAGAAGAACAGCCCATCGGCGCACTNGCGACTTCGCGGCGTCGCANCCTCACCAAACCGACCCANTTCGGACTGAATACCGGCACGTANGGGTAGACCGAATGGACCGGACAGACGGGATTGCATGATTTGACGGG] [+] EMBL AU030213 [TCGANCTCTTCTCTGCTGCTGCTGCTGCCATGGCGATTCCGTTGCTGCTGCTGCTCTTGCTGGCCATGTCCACAGGCTCAGATGGGGCGTTCTGCGTGTGCAAGCCCGACCAGAGCCCGGCGGCGATGCAGAAGGCCATCGACTACGCGTGCTGGCGCGGCGCCGACTNGCACCCAGATCATGCAGTCCGGCGCGTGCTACCAGCCGAGCACCATCGTCGCGCACTGCTCCTACGCCACCAACTCCTACTTCCAGAAGAACAGCCCATCGGCGCACTNGCGACTTCGCGGCGTCGCANCCTCACCAAACCGACCCANTTCGGACTGAATACCGGCACGTANGGGTAGACCGAATGGACCGGACAGACGGGATTGCATGATTTGACGGG] consensusID : consensus_15070#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [TATACACTCCACTCAGACTACCTTTCTTCAGTCTAAGCATGTCCAGAATTTTCAGTGCACAATGTCTTCAAGAATTTATAAAGGAGGTTTCTTACTTTCTTTGCTCACTACTACGTCTGATTTTTTGTGTGCAGCGGCGTAGGCACCGGAATGGGAACCGGAACCAGCACCGGCACTGGCACTGGAGTTGGCACCGGCGGCACCGGNACTGGTGGCGCAGGCGTCGGCGCAGGCACCGNCACAGGCGTTGGCACAGGAACCGGCACCGGCGCAGGCATGGGCACCGGTGCTGGTGCCGGCACCGGGATCACGACCCCGGGATCGANCACCGGTACTCAGGGAGGCGNCCTGAGCCCACCGTTTTGGCGGCGNA] [+] EMBL C28838 [TATACACTCCACTCAGACTACCTTTCTTCAGTCTAAGCATGTCCAGAATTTTCAGTGCACAATGTCTTCAAGAATTTATAAAGGAGGTTTCTTACTTTCTTTGCTCACTACTACGTCTGATTTTTTGTGTGCAGCGGCGTAGGCACCGGAATGGGAACCGGAACCAGCACCGGCACTGGCACTGGAGTTGGCACCGGCGGCACCGGNACTGGTGGCGCAGGCGTCGGCGCAGGCACCGNCACAGGCGTTGGCACAGGAACCGGCACCGGCGCAGGCATGGGCACCGGTGCTGGTGCCGGCACCGGGATCACGACCCCGGGATCGANCACCGGTACTCAGGGAGGCGNCCTGAGCCCACCGTTTTGGCGGCGNA] consensusID : consensus_15070#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [CTCGTCATCGGGCCCTCGCCTCCGCGCCCTTGCCGCCGAACGCCGCCGTCGCTAGCACCGAGAAGAAGAAAGGAGGAGAGAGATGTTAGAGGGAGAGGATGACTAGGCTGCCATATGTACGCCATGTCAGCGAAAACCCACCCTTTAAACACCGAGAGAGTTATTTCAGATGGTTTTAATAATTCGAGAAATCATTATATCTGGTTTTATAATTTAGGGATACGAGTCAGATTAGACGTATATTTAAGAGTCAATTGGACTTTTTCCCTTCNTTAATTAACCATTGAGTTTGACATCGAAATAAAAAAAAAA] [+] EMBL BM421629 [CTCGTCATCGGGCCCTCGCCTCCGCGCCCTTGCCGCCGAACGCCGCCGTCGCTAGCACCGAGAAGAAGAAAGGAGGAGAGAGATGTTAGAGGGAGAGGATGACTAGGCTGCCATATGTACGCCATGTCAGCGAAAACCCACCCTTTAAACACCGAGAGAGTTATTTCAGATGGTTTTAATAATTCGAGAAATCATTATATCTGGTTTTATAATTTAGGGATACGAGTCAGATTAGACGTATATTTAAGAGTCAATTGGACTTTTTCCCTTCNTTAATTAACCATTGAGTTTGACATCGAAATAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15070#1 ------------------------------------------------------------ consensus_15070#3 ------------------------------------------------------------ consensus_15070#0 TGCACTTCACAGTTCACACCACCTTCCTTCCTTCCCGACTCCCCACACCGGCCGGTCTCC 60 consensus_15070#4 ------------------------------------------------------------ consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 ------------------------------------------------------------ consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 ------------------------------------------------------------ consensus_15070#3 ------------------------------------------------------------ consensus_15070#0 TTCTCGCTGCAGGGAGAGAGAGCTCGAGCTCTTCTCTGCTGCTGCTGCTGCCATGGCGAT 120 consensus_15070#4 ------------------------------------------------------------ consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 ------------------------------------------------------------ consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 ------------------------------------------------------------ consensus_15070#3 ------------------------------------------------------------ consensus_15070#0 TCCGTTGCTGCTGCTGCTCTTGCTGGCCATGTCCACAGGCTCAGATGGGGCGTTCTGCGT 180 consensus_15070#4 ------------------------------------------------------------ consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 ------------------------------------------------------------ consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 ------------------------------------------------------------ consensus_15070#3 ------------------------------------------------------------ consensus_15070#0 GTGCAAGCCCGACCAGAGCCCGGCGGCGATGCAGAAGGCCATCGACTACGCGTGCTGGCG 240 consensus_15070#4 ------------------------------------------------------------ consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 ------------------------------------------------------------ consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 ------------------------------------------------------------ consensus_15070#3 ------------------------------------------------------------ consensus_15070#0 CGGCGCCGACTGCACCCAGATCATGCAGTCCGGCGCGTGCTACCAGCCGAGCACCATCGT 300 consensus_15070#4 ------------------------------------------------------------ consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 ------------------------------------------------------------ consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 ------------------------------------------------------------ consensus_15070#3 ------------------------------------------------------------ consensus_15070#0 CGCGCACTGCTCCTACGCCACCAACTCCTACTTCCAGAAGAACAGCCCCATCGGCGCCAC 360 consensus_15070#4 ------------------------------------------------------------ consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 ------------------------------------------------------------ consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 ------------------------------------------------------------ consensus_15070#3 ------------------------------------------------------------ consensus_15070#0 CTGCGACTTCGGCGGCGTCGCCACCCTCACCAACACCGACCCCAGCTCCGGCACCTGCAA 420 consensus_15070#4 ------------------------------------------------------------ consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 ------------------------------------------------------------ consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 ------------------------------------------------------------ consensus_15070#3 ------------------------------------------------------------ consensus_15070#0 GTACCCGGCCACCGCTAGCGGCGTAGGCACCGGAATGGGAACCGGAACCAGCACCGGCAC 480 consensus_15070#4 ------------------------------------------------------------ consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 ------------------------------------------------------------ consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 ------------------------------------------------------------ consensus_15070#3 ------------------------------------------------------------ consensus_15070#0 TGGCACTGGAGTTGGCACCGGCGGCACCGGCACTGGTGGCGCAGGCGTCGGCGCAGGCAC 540 consensus_15070#4 ------------------------------------------------------------ consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 ----GCGGGCAGATGGGGCGTTCTGCGTGTTCAAGCCCNACCAGAGTCCGNCGGCGATGC 56 consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 ------------------------------------------------------------ consensus_15070#3 ------------------------------------------------------------ consensus_15070#0 CGGCACAGGCGTTGGCACAGGAACCGGCACCGGCGCAGGCATGGGCACCGGTGCTGGTGC 600 consensus_15070#4 ------------------------------------------------------------ consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 AGAAGGCAATTGACTACGCGTGTTGGCGCAGCGCCGACTGCACCCAGATCATGCAGTCCG 116 consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 ----NANTNGACCTTCTCGGCANNTTTNAGGNAAGNCACCCCTGAAANCCNCCCGTTTTT 56 consensus_15070#3 ------------------------------------------------------------ consensus_15070#0 CGGCACCGGGATCACGACCCCGGGATCGACCACCGGCACTCAGGGAGGCGCCCTGAGCCC 660 consensus_15070#4 ------------------------------------------------------------ consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 GAGCGTGCTACCAGCCCAGCACCATCGGCGGCGGGGGCGAAATCCTCCGGCGCAGACGCG 176 consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 GGNGGCGNATATTGCCCCGTCCGGNCCGGGCGCCN--ATGAACCCCGACTAAANTGAGNC 114 consensus_15070#3 ------------------------------------------------------------ consensus_15070#0 ACCGTTTGGCGGCGCATATGGCCCGTCGGCCGGCGCCATGAACCCCGACTACAACGAGGC 720 consensus_15070#4 ------------------------------------------------------------ consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 AGCAGACGGCGCACGACGGGGCCGAGCGGACGGCGCGCGGTGGGGCCGAGATGTTGGCGG 236 consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 CCCCNCCGGTGCGTTTNTNANNTNNCCGCCGCCACNTCNGTCCTTCNTCGNCGCCGNACN 174 consensus_15070#3 -----------------------------CGCCACCTCCGTC-TTCTTTGCCGCGGCACC 30 consensus_15070#0 CGC-GCCGGCGCGCT-CCCAGCTGGCCGCCGCCACCTCCGTC-CTCCTCGCCGCCGCACC 777 consensus_15070#4 ------------------------------------TCGANC--TCTTCTCTGCTGCTGC 22 consensus_15070#5 ----------------------------TATACACTCCACTCAGACTACCTTTCTTCAGT 32 consensus_15070#2 CGATGGCGGGGTGGTCGACGAGGAGGACGACGACTGAGGAGGCGGGTCCGGGAGCCAACG 296 consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 ATTCCCTNTTCCNATCTCATN--TAGAGCCNCACAAGGGGGCANTGGATTCCCGTCNCGT 232 consensus_15070#3 ATT--CTTGTTCCATTTTATT--TAGAGCCCCACAAGGGGGCAGTGGATTCC-GTTTTGT 85 consensus_15070#0 ATT--CCTGTTCCATCTCATC--TAGAGCCACACAAGGGGGCAGTGGATTCC-GTCTCGT 832 consensus_15070#4 TGCTGCCATGGCGATTCCGTTGCTGCTGCTGCTCTTGCTGGCCATGTCCACAGGCTCAGA 82 consensus_15070#5 CTAAGCATGTCCAGAATTTTCAGTGCACAATGTCTTCAAGAATTTATAAAGGAGGTTTCT 92 consensus_15070#2 CTGTCGTCGTCGGGCCCAGCAGCTGCAAGCAACGCCCTCGTCATCGGGCCCTCGCCGCCG 356 consensus_15070#6 ------------------------------------CTCGTCATCGGGCCCTCGCCTCCG 24 * * consensus_15070#1 CGGTNNGTNNGGGGCNCACGGCGCCGGCCGGAGTTTGGTGGGCATTTGCAATGCANGCGG 292 consensus_15070#3 CGGTGG--TGGGGGCGCACGGCCCCGGCCGGAGTTTGGTGGGCATT-GCAAAACAA-CGG 141 consensus_15070#0 CGGTGG--TGGGGGCGCACGGCGCCGGCCGGAGTTTGGTGGGCATT-GCAATGCAG-CGG 888 consensus_15070#4 TGGGGCGTTCTGCGTGTGCAAGCCCGACCAGAGCCCGGCGGCGATGCAGAAGGCCATCGA 142 consensus_15070#5 TACTT---TCTTTGCTCACTACTACGTCTGATTTTTTGTGTGCAGCGGCGTAGGCACCGG 149 consensus_15070#2 CGCCCTTGCCGCCGAACGCCGCCGTCGCTAGCACCGAGAAGAAGAAAGGAGGAGAGAGAT 416 consensus_15070#6 CGCCCTTGCCGCCGAACGCCGCCGTCGCTAGCACCGAGAAGAAGAAAGGAGGAGAGAGAT 84 * * * * consensus_15070#1 CGTTGCCGGCGTTGGTGCTTTGTCTCGCCCGCGCTTTACCGGCCTGTGCCGCCACCCCTG 352 consensus_15070#3 GGTTGCCGGGGTTGGTGCTTTGTTTTGCCCGGGCTTT-CCGGCCTGTGCCGCCACCCCTG 200 consensus_15070#0 CGTTGCCGGCGTTGGTGCTTTGTCTCGCCCGCGCTTT-CCGGCCTGTGCCGCCACCCCTG 947 consensus_15070#4 --CTACGCGTGCTGGCGCGGCGCCG-ACTNGCAC----CCAGATCATGCAGTC-CGGCGC 194 consensus_15070#5 ---AATGGGAACCGGAACCAGCACCGGCACTGGCACT-GGAGTTGGCACCGGCGGCACCG 205 consensus_15070#2 GTTAGAGGGAGAGGATGACTAGGCTGCCATATGTACGCCACGTCAGCGAAAAC-C-ACCC 474 consensus_15070#6 GTTAGAGGGAGAGGATGACTAGGCTGCCATATGTACGCCATGTCAGCGAAAAC-CCACCC 143 * * * * * * consensus_15070#1 CTGGTTTTGAT-CGATCATCAGTGTATTCAGTAGTGGTACTGGGAGTACTCCTTCAGTAG 411 consensus_15070#3 GTGGTTTTGAT-CGATCATCAGGGTATTCAGTAGTGGGACTGGGAGGACTCCTTCAGTAG 259 consensus_15070#0 CTGGTTTTGAT-CGATCATCAGTGTATTCAGTAGTGGTACTGGGAGTACTCCTTCAGTAG 1006 consensus_15070#4 GTGCTACCAGC-CGAGCACCATCGTCGC--------GCACTG------CTCCTACGCCAC 239 consensus_15070#5 GNACTGGTGGCGCAGGCGTCGGCGCAG---------GCACCGNCACAGGCGTTGGCACAG 256 consensus_15070#2 TTAAAATAACCGAGAGAGTTATTTTAGACGATTTTAATAATTCGAGAAATCATC-----A 529 consensus_15070#6 TTTAAACA-CCGAGAGAGTTATTTCAGATGGTTTTAATAATTCGAGAAATCATT-----A 197 * * consensus_15070#1 TAGCCTACTCTCTCTGTTATTCAACTGACGAACTC-TTCTCCCTCGTGTGCCGGTGACTA 470 consensus_15070#3 TAGCCTACTTTTTTTGTTATTCAAATGACGAACTT-TTTTCCCTTGTGGGCCGGTGACTA 318 consensus_15070#0 TAGCCTACTCTCTCTGTTATTCAACTGACGAACTC-TTCTCCCTCGTGTGCCGGTGACTA 1065 consensus_15070#4 CAACTCCTACTTCCAGAAGAACAGCCCATCGGCGCACTNGCGACTTCGCGGCGTCGCANC 299 consensus_15070#5 GAACCGGCACCGGCGCAGGCATGGGCACCGGTGCTGGTGCCGGCACCGGGATCACGACCC 316 consensus_15070#2 TATCTGGTTTTGTGAAAAAAAAAAAAAA-------------------------------- 557 consensus_15070#6 TATCTGGTTTTATAATTTAGGGATACGAGTCAGATTAGACGTATATTTAAGAGTCAATTG 257 * * consensus_15070#1 CCC-ATCATACC-ATGTGGTGTGTTGTTTGTACCGGTGCAAATGCGTAGGTGAAGAGAGA 528 consensus_15070#3 CCC-ATCAAACC-ATGTGGTGTGTTGTTTGTACCGGGGCAAATGGGTAGGTGAAAAAAGA 376 consensus_15070#0 CCC-ATCATACC-ATGTGGTGTGTTGTTTGTACCGGTGCAAATGCGTAGGTGAAGAGAGA 1123 consensus_15070#4 CTC-ACCAAACCGACCCANTTCGGACTGAATACCGGCACGTANGGGTAGACCGAATGGAC 358 consensus_15070#5 CGGGATCGANCACCGGTACTCAGGGAGGCGNCCTGAGCCCACCGTTTTGGCGGCGNA--- 373 consensus_15070#2 ------------------------------------------------------------ consensus_15070#6 GACTTTTTCCCTTCNTTAATTAACCATTGAGTTTGACATCGAAATAAAAAAAAAA----- 312 consensus_15070#1 TCTAGAGATATTCTTTCGTGGTAGTAGCAGTTTGTGTGTGTTTCGGACATATCTGTGTTA 588 consensus_15070#3 TTTAAAAATATTTTTTTGTGGTAGAAGCAGTTTGTGTGT--------------------- 415 consensus_15070#0 TCTAGAGATATTCTTTCGTGGTAGTAGCAGTTTGTGTGTGTTTCGGAC------------ 1171 consensus_15070#4 CGGACAGACGGGATTGCATGATTTGACGGG------------------------------ 388 consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 ------------------------------------------------------------ consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 CTGTTCAAAAAAAAANGNGTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 648 consensus_15070#3 ------AAAAAAAAAAAA-------AAAAAAAAAAAAAAAAAAAAAAA------------ 450 consensus_15070#0 ------AAAAAAAAAAAA-------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAA 1218 consensus_15070#4 ------------------------------------------------------------ consensus_15070#5 ------------------------------------------------------------ consensus_15070#2 ------------------------------------------------------------ consensus_15070#6 ------------------------------------------------------------ consensus_15070#1 AAAAAAAAAA 658 consensus_15070#3 ---------- consensus_15070#0 AAAAA----- 1223 consensus_15070#4 ---------- consensus_15070#5 ---------- consensus_15070#2 ---------- consensus_15070#6 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||