These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 968 fasta sequence [TTTTTAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCA-CAAGTTCTGTGGGAGTACAACACG-GTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTC-CTA-TG-TGAATAACCAA-GT-GTGGC-TTCTTTATATGCT-GGTGGAATGCATACATCT-GGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGT-TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC-TGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGT-TGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT-GATGAACCCTGTTCCAGTCTGCAGGATATTGACAGTGCACACACAAATTAAGATCATAAGTGCACTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACGTACCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGC] [-] EMBL AU223218 [TTTTTAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCA CAAGTTCT TGGGAGTACAACACG GTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTC CTA TG TGAATAACCAA GT GTGGC TTCTTTATATGCT GGTGGAATGCATACATCT GGCTGTACGTGTAGTCATGTANAGCGCGCGTTGCTCAGCTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC TGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGT TGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGNGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGA ] [-] EMBL BI806648 [ caTAATAATGCTGTTTNTATTTCCTGTAATACTTG TG CCCCAAACACAAATCTGTGATCGAAGCA CAAGTTCTGTGGGAGTACAACACG GTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTC CTAGTG TGAATAACCAAGGTGGTGGCGTTCTTTATATGCTGGGTGGAATGCATACATCTGGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTGTGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAACGTGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGTNTGATAATGGCTGAAGAACAGGCATGTATACAGCATNGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGG GCTCCGATGCATCTGGGTCATCAGAC GATGAAACGAGGGGTCCGGCGAGGG TTGTCCATCTTGGATGAACCCTGTT ] [+] EMBL CB641430 [ cATAATTGCTGCCCCCAAACACGAATCTGTGATCCAAGCACCACCTTCTCTGGGAGTACAACACGCGTTAACACCACAACAAACTCCTTGCATAACAGTAAAAATGCATGTGTCACTA TG TGAATAACCAA GT GTGGC TTCTTTATATGCT GGTGGAATGCATACCTCT GGCTGTACATGAATCCATGTAGAGCGCGCGTTGCTCAACTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC TGGTTGCTTGCTTACTGATGCTTCTTGAACAAAATTTCAACCAAACTCTGT TGATAATTGCTGAAGAACACGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCCGCTGATGGGATCCACTCTTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAAACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT GA ] [+] EMBL CB643680 [ gTCCTTGCAGAACAGTAAAAAGGCGTGTGTC CTAGTGCTGAATAACCAA GT GTGGC TTCTTTATATGCT GGTGGAATGCATACCTCT GGCTGTACGTGAATTCATGTAGAGCGCGCGTTGCTCAACTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCGACAGC TGGTTGCTTGCTTACTGATGCTTCTTGAACGAAATTTCAACCAAACTCTGT TGATAATTGCTGAACAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAAACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT GATGAACCCTGTTCCAGTCTGCAGGATATTGACGGTGCACACGCAAATTAAGATCGTAAGTGCACTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACCTACCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCAC ] [-] EMBL CB641429 [ ACATCT GGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC TGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGT TGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT GATGAACCCTGTTCCAGTCTGCAGGATATTGACAGTGCACACACAAATTAAGATCATAAGTGCACTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACGTACCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGC] [-] EMBL CB643679 [ GCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC TGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGT TGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT GATGAACCCTGTTCCAGTCTGCAGGATATTGACAGTGCACACACAAATTAAGATCATAAGTGCACTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACGTACCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGC] consensusID : consensus_15084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 818 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACATAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT-GGGAGTA-CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG-TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT-GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC-CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT-TAGCTAGCGCTCGTGTAAGCTTCAAGCAGTCCA] [-] EMBL CA754484 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACATAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACA ] [-] EMBL BM421967 [ TTTTTTACCATAATAATGCTGTTTTTATNGGCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAG CGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCA CCTCGCACACCAATTTCTC ] [-] EMBL AU076034 [ TTTTTAACATAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCA GGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGAGGAACCCTGTTCCA TCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCC TGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCAACCTCGCACACCAA TTCTCGGTGTGGGGCTTCGAGCTGCTGGGAACTGTCGAGCTC GGGTGGGA TCGTCGGGGANGAaacg ] [-] EMBL AK120374 [ ATAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTCGTGTAAGCTTCAAGCAGTCCA] [+] EMBL CB638285 [ ATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAG ] [-] EMBL AK099963 [ TGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTCGTGTAAGCTTCAAGCAGTCCA] [-] EMBL CB684955 [ TGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCAAAGGTGA ] [-] EMBL CB681699 [ TTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCTTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTCGT ] [+] EMBL CB681700 [ TTTTATTTCCTGTAATACTCGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCTTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTCGTGTAAG ] [+] EMBL CB965933 [ TTTTATTTCCTGTAATACTTGCTG CCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTAGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCG ] [-] EMBL AU076033 [ CAAGTTCTTGGGGAGTACCAACAC GTTTACACCACAAGAAACTCCTTGCAGAACANTAAANATGCATGTGTCCTATGTGNATAACCAATTTTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTT CCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTTCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCGCT GCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTNT NTNCGAAGCGCGCTGTGCCTTCGTGTA NTAGCGCTCGT ] [-] EMBL AU069935 [ AGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGNAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTC ] [-] EMBL OSC0651 [ AATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCNGGGTGGGAGTCGTCGGGGANGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTNCGGGAGGGCTTGGAGT GCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCNCCTCGGCCTCCATCGCCGC NATANCCTCCGGGNACAGGTGCNCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTATNTC CGAAGCGCNCTGTGCCTTCGTATAG TAGCGCTCGTGTAAGCTTCA ] consensusID : consensus_15084#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [CTGTTGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATTCACTCGTTTGTAGCAGGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTAGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGGGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCG] [-] EMBL CB652610 [CTGTTGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATTCACTCGTTTGTAGCAGGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTAGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGGGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15084#0 TTTTTAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTG 60 consensus_15084#2 ------------------------------------------------------------ consensus_15084#1 ------------------------------------------------------------ consensus_15084#0 ATCGAAGCACAAGTTCTGTGGGAGTACAACACGGTTAACACCACAAGAAACTCCTTGCAG 120 consensus_15084#2 ------------------------------------------------------------ consensus_15084#1 -----------------------------------------------------TTTTTTT 7 consensus_15084#0 AACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGT 180 consensus_15084#2 ------------------------------------------------------------ consensus_15084#1 TTTTTTTTTTTTTTTTTTTTTTAACATAATAATGCTGTTTTTATTTCCTGTAATACTTGC 67 consensus_15084#0 GGAATGCATACATCTGGCTGTACGTGTAGTC--ATGTAGAGCGCGCGTTGCTCAGCTGTC 238 consensus_15084#2 ------------------------------------------------------------ consensus_15084#1 TGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTTGGGAGTACAACACGGTTAAC 127 consensus_15084#0 ACTTCTGTTGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAACTGGTTGCTTGCTT 298 consensus_15084#2 ------------------------------------------------------------ consensus_15084#1 ACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGT 187 consensus_15084#0 ACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGTTGATAATTGC-----TGAAGAA 353 consensus_15084#2 ----------------------------------CTGTTGATAATTGC-----TGAAGAA 21 consensus_15084#1 GTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAG 247 *** ** ** ** *** consensus_15084#0 CAGGCAT------GTATACAGCATTGGACAACTTAAACAAGTACAGTTAC--CGTGTCAG 405 consensus_15084#2 CAGGCAT------GTATACAGCATTGGACAACTTAAACAAGTACAGTTAC--CGTGTCAG 73 consensus_15084#1 CGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAG 307 * ** * * ** ** *** * * * *** ******** consensus_15084#0 CTGATGGGATCCACTCGTTTGTAGCAGG-ATTTCCCTTGCAGGAGGCATGGCGCTCCGAT 464 consensus_15084#2 CTGATGGGATTCACTCGTTTGTAGCAGGGATTTCCCTTGCAGGAGGCATGGCGCTCCGAT 133 consensus_15084#1 CTGATGGGATCCACTCGTTTGTAGCAGG-ATTTCCCTTGCAGGAGGCATGGCGCTCCGAT 366 ********** ***************** ******************************* consensus_15084#0 GCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATG 524 consensus_15084#2 GCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATG 193 consensus_15084#1 GCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATG 426 ************************************************************ consensus_15084#0 AACCCTGTTCCAGTCTGCAGGATATTGACAGTGCACACACAAATTAAGATCATAAGTGCA 584 consensus_15084#2 AACCCTGTTCCAGTC--------------------------------------------- 208 consensus_15084#1 AACCCTGTTCCAGTC--------------------------------------------- 441 *************** consensus_15084#0 CTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACGTA 644 consensus_15084#2 ------------------------------------------------------------ consensus_15084#1 ------------------------------------------------------------ consensus_15084#0 CCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACT 704 consensus_15084#2 --GTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACT 266 consensus_15084#1 --GTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACT 499 ********************************************************** consensus_15084#0 CATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGA 764 consensus_15084#2 CATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGA 326 consensus_15084#1 CATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGA 559 ************************************************************ consensus_15084#0 ACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGG 824 consensus_15084#2 ACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGG 386 consensus_15084#1 ACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGG 619 ************************************************************ consensus_15084#0 GCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCA 884 consensus_15084#2 GCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTAGTCGTAGTACTCCCGCA 446 consensus_15084#1 GCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCA 679 ****************************************** ***************** consensus_15084#0 CCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCC 944 consensus_15084#2 CCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGGGTCGCTCCTGGCCGGCC 506 consensus_15084#1 CCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCC 739 ****************************************** ***************** consensus_15084#0 TCGACATTTCTTCCGATCTTTCGC------------------------------------ 968 consensus_15084#2 TCGACATTTCTTCCGATCTTTCG------------------------------------- 529 consensus_15084#1 TCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGTTAGCTAGCGCTCGT 799 *********************** consensus_15084#0 ------------------- consensus_15084#2 ------------------- consensus_15084#1 GTAAGCTTCAAGCAGTCCA 818 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||