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Oryza sativa
cluster # 15084 cluster # 15084       Sequences # 20       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15084#0 length = 968 sequences # 6  
consensus_15084#1 length = 818 sequences # 13  
consensus_15084#2 length = 529 sequences # 1  

consensusID : consensus_15084#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 968
fasta sequence
                              [TTTTTAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCA-CAAGTTCTGTGGGAGTACAACACG-GTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTC-CTA-TG-TGAATAACCAA-GT-GTGGC-TTCTTTATATGCT-GGTGGAATGCATACATCT-GGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGT-TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC-TGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGT-TGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT-GATGAACCCTGTTCCAGTCTGCAGGATATTGACAGTGCACACACAAATTAAGATCATAAGTGCACTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACGTACCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGC]

[-] EMBL AU223218             [TTTTTAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCA CAAGTTCT TGGGAGTACAACACG GTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTC CTA TG TGAATAACCAA GT GTGGC TTCTTTATATGCT GGTGGAATGCATACATCT GGCTGTACGTGTAGTCATGTANAGCGCGCGTTGCTCAGCTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC TGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGT TGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGNGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL BI806648             [  caTAATAATGCTGTTTNTATTTCCTGTAATACTTG TG CCCCAAACACAAATCTGTGATCGAAGCA CAAGTTCTGTGGGAGTACAACACG GTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTC CTAGTG TGAATAACCAAGGTGGTGGCGTTCTTTATATGCTGGGTGGAATGCATACATCTGGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTGTGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAACGTGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGTNTGATAATGGCTGAAGAACAGGCATGTATACAGCATNGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGG GCTCCGATGCATCTGGGTCATCAGAC GATGAAACGAGGGGTCCGGCGAGGG TTGTCCATCTTGGATGAACCCTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB641430             [                             cATAATTGCTGCCCCCAAACACGAATCTGTGATCCAAGCACCACCTTCTCTGGGAGTACAACACGCGTTAACACCACAACAAACTCCTTGCATAACAGTAAAAATGCATGTGTCACTA TG TGAATAACCAA GT GTGGC TTCTTTATATGCT GGTGGAATGCATACCTCT GGCTGTACATGAATCCATGTAGAGCGCGCGTTGCTCAACTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC TGGTTGCTTGCTTACTGATGCTTCTTGAACAAAATTTCAACCAAACTCTGT TGATAATTGCTGAAGAACACGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCCGCTGATGGGATCCACTCTTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAAACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT GA                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB643680             [                                                                                                                gTCCTTGCAGAACAGTAAAAAGGCGTGTGTC CTAGTGCTGAATAACCAA GT GTGGC TTCTTTATATGCT GGTGGAATGCATACCTCT GGCTGTACGTGAATTCATGTAGAGCGCGCGTTGCTCAACTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCGACAGC TGGTTGCTTGCTTACTGATGCTTCTTGAACGAAATTTCAACCAAACTCTGT TGATAATTGCTGAACAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAAACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT GATGAACCCTGTTCCAGTCTGCAGGATATTGACGGTGCACACGCAAATTAAGATCGTAAGTGCACTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACCTACCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCAC                                                                                                                                                                                                                                              ]
[-] EMBL CB641429             [                                                                                                                                                                                                      ACATCT GGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC TGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGT TGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT GATGAACCCTGTTCCAGTCTGCAGGATATTGACAGTGCACACACAAATTAAGATCATAAGTGCACTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACGTACCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGC]
[-] EMBL CB643679             [                                                                                                                                                                                                              GCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC TGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGT TGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT GATGAACCCTGTTCCAGTCTGCAGGATATTGACAGTGCACACACAAATTAAGATCATAAGTGCACTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACGTACCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGC]


>consensus_15084#0 TTTTTAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTG ATCGAAGCACAAGTTCTGTGGGAGTACAACACGGTTAACACCACAAGAAACTCCTTGCAG AACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGT GGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCAC TTCTGTTGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAACTGGTTGCTTGCTTAC TGATGCTTCTTGAACAGAATTTCAACCAAACTCTGTTGATAATTGCTGAAGAACAGGCAT GTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACT CGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAG ACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCT GCAGGATATTGACAGTGCACACACAAATTAAGATCATAAGTGCACTGTGATCAGTTCGAA TTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACGTACCGTGTGGTGCTGCTT GCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCC ACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGG GTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGG CTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGC CGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGA TCTTTCGC



consensusID : consensus_15084#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 818
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACATAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT-GGGAGTA-CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG-TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT-GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC-CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT-TAGCTAGCGCTCGTGTAAGCTTCAAGCAGTCCA]

[-] EMBL CA754484             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACATAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL BM421967             [                       TTTTTTACCATAATAATGCTGTTTTTATNGGCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAG CGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCA CCTCGCACACCAATTTCTC                                                                                                                                                                                                                                                                                             ]
[-] EMBL AU076034             [                        TTTTTAACATAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCA GGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGAGGAACCCTGTTCCA TCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCC TGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCAACCTCGCACACCAA TTCTCGGTGTGGGGCTTCGAGCTGCTGGGAACTGTCGAGCTC GGGTGGGA TCGTCGGGGANGAaacg                                                                                                                                                                                                                             ]
[-] EMBL AK120374             [                                ATAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTCGTGTAAGCTTCAAGCAGTCCA]
[+] EMBL CB638285             [                                      ATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAG                                                                                                                                                                                                                                              ]
[-] EMBL AK099963             [                                       TGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTCGTGTAAGCTTCAAGCAGTCCA]
[-] EMBL CB684955             [                                       TGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCAAAGGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB681699             [                                            TTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCTTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTCGT                   ]
[+] EMBL CB681700             [                                             TTTTATTTCCTGTAATACTCGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCTTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTCGTGTAAG              ]
[+] EMBL CB965933             [                                             TTTTATTTCCTGTAATACTTGCTG CCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTAGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCG                                                                                                                                                                     ]
[-] EMBL AU076033             [                                                                                                  CAAGTTCTTGGGGAGTACCAACAC GTTTACACCACAAGAAACTCCTTGCAGAACANTAAANATGCATGTGTCCTATGTGNATAACCAATTTTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTT CCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTTCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCGCT GCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTNT NTNCGAAGCGCGCTGTGCCTTCGTGTA NTAGCGCTCGT                   ]
[-] EMBL AU069935             [                                                                                                                                                                                                                                                                                                                                                               AGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGNAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTC                     ]
[-] EMBL OSC0651              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCNGGGTGGGAGTCGTCGGGGANGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTNCGGGAGGGCTTGGAGT GCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCNCCTCGGCCTCCATCGCCGC NATANCCTCCGGGNACAGGTGCNCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTATNTC CGAAGCGCNCTGTGCCTTCGTATAG TAGCGCTCGTGTAAGCTTCA         ]


>consensus_15084#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACATAATAATGCTGTTTTTATTTCCTGTAA TACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTTGGGAGTACAACAC GGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATA ACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCA TGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACC GTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGC TCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATC TTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAG TACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTG TGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCG TCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCC TCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGC GCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCC TTCGTTAGCTAGCGCTCGTGTAAGCTTCAAGCAGTCCA



consensusID : consensus_15084#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence
                              [CTGTTGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATTCACTCGTTTGTAGCAGGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTAGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGGGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCG]

[-] EMBL CB652610             [CTGTTGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATTCACTCGTTTGTAGCAGGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTAGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGGGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCG]


>consensus_15084#2 CTGTTGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACA GTTACCGTGTCAGCTGATGGGATTCACTCGTTTGTAGCAGGGATTTCCCTTGCAGGAGGC ATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTT GTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATC CTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTT CTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGAC GAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGG CGCCGCCTAGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGA CAGGTGCGGGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15084#0      TTTTTAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTG 60
consensus_15084#2      ------------------------------------------------------------
consensus_15084#1      ------------------------------------------------------------
                                                                                   

consensus_15084#0      ATCGAAGCACAAGTTCTGTGGGAGTACAACACGGTTAACACCACAAGAAACTCCTTGCAG 120
consensus_15084#2      ------------------------------------------------------------
consensus_15084#1      -----------------------------------------------------TTTTTTT 7
                                                                                   

consensus_15084#0      AACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGT 180
consensus_15084#2      ------------------------------------------------------------
consensus_15084#1      TTTTTTTTTTTTTTTTTTTTTTAACATAATAATGCTGTTTTTATTTCCTGTAATACTTGC 67
                                                                                   

consensus_15084#0      GGAATGCATACATCTGGCTGTACGTGTAGTC--ATGTAGAGCGCGCGTTGCTCAGCTGTC 238
consensus_15084#2      ------------------------------------------------------------
consensus_15084#1      TGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTTGGGAGTACAACACGGTTAAC 127
                                                                                   

consensus_15084#0      ACTTCTGTTGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAACTGGTTGCTTGCTT 298
consensus_15084#2      ------------------------------------------------------------
consensus_15084#1      ACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGT 187
                                                                                   

consensus_15084#0      ACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGTTGATAATTGC-----TGAAGAA 353
consensus_15084#2      ----------------------------------CTGTTGATAATTGC-----TGAAGAA 21
consensus_15084#1      GTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAG 247
                                                         ***    **  **      ** *** 

consensus_15084#0      CAGGCAT------GTATACAGCATTGGACAACTTAAACAAGTACAGTTAC--CGTGTCAG 405
consensus_15084#2      CAGGCAT------GTATACAGCATTGGACAACTTAAACAAGTACAGTTAC--CGTGTCAG 73
consensus_15084#1      CGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAG 307
                       *  ** *      *    **    **     ***     *   * * ***  ********

consensus_15084#0      CTGATGGGATCCACTCGTTTGTAGCAGG-ATTTCCCTTGCAGGAGGCATGGCGCTCCGAT 464
consensus_15084#2      CTGATGGGATTCACTCGTTTGTAGCAGGGATTTCCCTTGCAGGAGGCATGGCGCTCCGAT 133
consensus_15084#1      CTGATGGGATCCACTCGTTTGTAGCAGG-ATTTCCCTTGCAGGAGGCATGGCGCTCCGAT 366
                       ********** ***************** *******************************

consensus_15084#0      GCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATG 524
consensus_15084#2      GCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATG 193
consensus_15084#1      GCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATG 426
                       ************************************************************

consensus_15084#0      AACCCTGTTCCAGTCTGCAGGATATTGACAGTGCACACACAAATTAAGATCATAAGTGCA 584
consensus_15084#2      AACCCTGTTCCAGTC--------------------------------------------- 208
consensus_15084#1      AACCCTGTTCCAGTC--------------------------------------------- 441
                       ***************                                             

consensus_15084#0      CTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACGTA 644
consensus_15084#2      ------------------------------------------------------------
consensus_15084#1      ------------------------------------------------------------
                                                                                   

consensus_15084#0      CCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACT 704
consensus_15084#2      --GTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACT 266
consensus_15084#1      --GTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACT 499
                         **********************************************************

consensus_15084#0      CATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGA 764
consensus_15084#2      CATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGA 326
consensus_15084#1      CATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGA 559
                       ************************************************************

consensus_15084#0      ACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGG 824
consensus_15084#2      ACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGG 386
consensus_15084#1      ACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGG 619
                       ************************************************************

consensus_15084#0      GCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCA 884
consensus_15084#2      GCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTAGTCGTAGTACTCCCGCA 446
consensus_15084#1      GCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCA 679
                       ****************************************** *****************

consensus_15084#0      CCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCC 944
consensus_15084#2      CCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGGGTCGCTCCTGGCCGGCC 506
consensus_15084#1      CCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCC 739
                       ****************************************** *****************

consensus_15084#0      TCGACATTTCTTCCGATCTTTCGC------------------------------------ 968
consensus_15084#2      TCGACATTTCTTCCGATCTTTCG------------------------------------- 529
consensus_15084#1      TCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGTTAGCTAGCGCTCGT 799
                       ***********************                                     

consensus_15084#0      -------------------
consensus_15084#2      -------------------
consensus_15084#1      GTAAGCTTCAAGCAGTCCA 818
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)