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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 968 fasta sequence
[TTTTTAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCA-CAAGTTCTGTGGGAGTACAACACG-GTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTC-CTA-TG-TGAATAACCAA-GT-GTGGC-TTCTTTATATGCT-GGTGGAATGCATACATCT-GGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGT-TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC-TGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGT-TGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT-GATGAACCCTGTTCCAGTCTGCAGGATATTGACAGTGCACACACAAATTAAGATCATAAGTGCACTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACGTACCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGC]
[-] EMBL AU223218 [TTTTTAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCA CAAGTTCT TGGGAGTACAACACG GTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTC CTA TG TGAATAACCAA GT GTGGC TTCTTTATATGCT GGTGGAATGCATACATCT GGCTGTACGTGTAGTCATGTANAGCGCGCGTTGCTCAGCTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC TGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGT TGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGNGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGA ]
[-] EMBL BI806648 [ caTAATAATGCTGTTTNTATTTCCTGTAATACTTG TG CCCCAAACACAAATCTGTGATCGAAGCA CAAGTTCTGTGGGAGTACAACACG GTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTC CTAGTG TGAATAACCAAGGTGGTGGCGTTCTTTATATGCTGGGTGGAATGCATACATCTGGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTGTGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAACGTGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGTNTGATAATGGCTGAAGAACAGGCATGTATACAGCATNGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGG GCTCCGATGCATCTGGGTCATCAGAC GATGAAACGAGGGGTCCGGCGAGGG TTGTCCATCTTGGATGAACCCTGTT ]
[+] EMBL CB641430 [ cATAATTGCTGCCCCCAAACACGAATCTGTGATCCAAGCACCACCTTCTCTGGGAGTACAACACGCGTTAACACCACAACAAACTCCTTGCATAACAGTAAAAATGCATGTGTCACTA TG TGAATAACCAA GT GTGGC TTCTTTATATGCT GGTGGAATGCATACCTCT GGCTGTACATGAATCCATGTAGAGCGCGCGTTGCTCAACTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC TGGTTGCTTGCTTACTGATGCTTCTTGAACAAAATTTCAACCAAACTCTGT TGATAATTGCTGAAGAACACGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCCGCTGATGGGATCCACTCTTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAAACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT GA ]
[+] EMBL CB643680 [ gTCCTTGCAGAACAGTAAAAAGGCGTGTGTC CTAGTGCTGAATAACCAA GT GTGGC TTCTTTATATGCT GGTGGAATGCATACCTCT GGCTGTACGTGAATTCATGTAGAGCGCGCGTTGCTCAACTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCGACAGC TGGTTGCTTGCTTACTGATGCTTCTTGAACGAAATTTCAACCAAACTCTGT TGATAATTGCTGAACAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAAACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT GATGAACCCTGTTCCAGTCTGCAGGATATTGACGGTGCACACGCAAATTAAGATCGTAAGTGCACTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACCTACCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCAC ]
[-] EMBL CB641429 [ ACATCT GGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC TGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGT TGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT GATGAACCCTGTTCCAGTCTGCAGGATATTGACAGTGCACACACAAATTAAGATCATAAGTGCACTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACGTACCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGC]
[-] EMBL CB643679 [ GCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGT TGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAAC TGGTTGCTTGCTTACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGT TGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTT GATGAACCCTGTTCCAGTCTGCAGGATATTGACAGTGCACACACAAATTAAGATCATAAGTGCACTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACGTACCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGC]
consensusID : consensus_15084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 818 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACATAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT-GGGAGTA-CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG-TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT-GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC-CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT-TAGCTAGCGCTCGTGTAAGCTTCAAGCAGTCCA]
[-] EMBL CA754484 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACATAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACA ]
[-] EMBL BM421967 [ TTTTTTACCATAATAATGCTGTTTTTATNGGCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAG CGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCA CCTCGCACACCAATTTCTC ]
[-] EMBL AU076034 [ TTTTTAACATAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCA GGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGAGGAACCCTGTTCCA TCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCC TGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCAACCTCGCACACCAA TTCTCGGTGTGGGGCTTCGAGCTGCTGGGAACTGTCGAGCTC GGGTGGGA TCGTCGGGGANGAaacg ]
[-] EMBL AK120374 [ ATAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTCGTGTAAGCTTCAAGCAGTCCA]
[+] EMBL CB638285 [ ATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAG ]
[-] EMBL AK099963 [ TGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTCGTGTAAGCTTCAAGCAGTCCA]
[-] EMBL CB684955 [ TGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCAAAGGTGA ]
[-] EMBL CB681699 [ TTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCTTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTCGT ]
[+] EMBL CB681700 [ TTTTATTTCCTGTAATACTCGCTGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCTTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTCGTGTAAG ]
[+] EMBL CB965933 [ TTTTATTTCCTGTAATACTTGCTG CCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTT GGGAGTA CAACACGGTTAACACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTAGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCG ]
[-] EMBL AU076033 [ CAAGTTCTTGGGGAGTACCAACAC GTTTACACCACAAGAAACTCCTTGCAGAACANTAAANATGCATGTGTCCTATGTGNATAACCAATTTTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAGCGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAGCTGATGGGATCCACTCGTTTGTAGCAGGATTT CCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTTCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCGCT GCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTNT NTNCGAAGCGCGCTGTGCCTTCGTGTA NTAGCGCTCGT ]
[-] EMBL AU069935 [ AGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCG TCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGNAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGC CTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGT TAGCTAGCGCTC ]
[-] EMBL OSC0651 [ AATTTCTCGGTGT GGGCTTCGAGCTGCTGGAACCTGTCGAGCTCNGGGTGGGAGTCGTCGGGGANGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTNCGGGAGGGCTTGGAGT GCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCNCCTCGGCCTCCATCGCCGC NATANCCTCCGGGNACAGGTGCNCGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTATNTC CGAAGCGCNCTGTGCCTTCGTATAG TAGCGCTCGTGTAAGCTTCA ]
consensusID : consensus_15084#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[CTGTTGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATTCACTCGTTTGTAGCAGGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTAGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGGGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCG]
[-] EMBL CB652610 [CTGTTGATAATTGCTGAAGAACAGGCATGTATACAGCATTGGACAACTTAAACAAGTACAGTTACCGTGTCAGCTGATGGGATTCACTCGTTTGTAGCAGGGATTTCCCTTGCAGGAGGCATGGCGCTCCGATGCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATGAACCCTGTTCCAGTCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACTCATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGAACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGGGCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTAGTCGTAGTACTCCCGCACCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGGGTCGCTCCTGGCCGGCCTCGACATTTCTTCCGATCTTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15084#0 TTTTTAATAATGCTGTTTTTATTTCCTGTAATACTTGCTGCCCCCAAACACAAATCTGTG 60
consensus_15084#2 ------------------------------------------------------------
consensus_15084#1 ------------------------------------------------------------
consensus_15084#0 ATCGAAGCACAAGTTCTGTGGGAGTACAACACGGTTAACACCACAAGAAACTCCTTGCAG 120
consensus_15084#2 ------------------------------------------------------------
consensus_15084#1 -----------------------------------------------------TTTTTTT 7
consensus_15084#0 AACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGTGTGGCTTCTTTATATGCTGGT 180
consensus_15084#2 ------------------------------------------------------------
consensus_15084#1 TTTTTTTTTTTTTTTTTTTTTTAACATAATAATGCTGTTTTTATTTCCTGTAATACTTGC 67
consensus_15084#0 GGAATGCATACATCTGGCTGTACGTGTAGTC--ATGTAGAGCGCGCGTTGCTCAGCTGTC 238
consensus_15084#2 ------------------------------------------------------------
consensus_15084#1 TGCCCCCAAACACAAATCTGTGATCGAAGCACAAGTTCTTGGGAGTACAACACGGTTAAC 127
consensus_15084#0 ACTTCTGTTGGGCTTGTCTGACGCCGGATACACCTGAAACCAACAACTGGTTGCTTGCTT 298
consensus_15084#2 ------------------------------------------------------------
consensus_15084#1 ACCACAAGAAACTCCTTGCAGAACAGTAAAGATGCATGTGTCCTATGTGAATAACCAAGT 187
consensus_15084#0 ACTGATGCTTCTTGAACAGAATTTCAACCAAACTCTGTTGATAATTGC-----TGAAGAA 353
consensus_15084#2 ----------------------------------CTGTTGATAATTGC-----TGAAGAA 21
consensus_15084#1 GTGGCTTCTTTATATGCTGGTGGAATGCATACATCTGGCTGTACGTGTAGTCATGTAGAG 247
*** ** ** ** ***
consensus_15084#0 CAGGCAT------GTATACAGCATTGGACAACTTAAACAAGTACAGTTAC--CGTGTCAG 405
consensus_15084#2 CAGGCAT------GTATACAGCATTGGACAACTTAAACAAGTACAGTTAC--CGTGTCAG 73
consensus_15084#1 CGCGCGTTGCTCAGCTGTCACTTCTGTTGGGCTTGTCTGACGCCGGATACACCGTGTCAG 307
* ** * * ** ** *** * * * *** ********
consensus_15084#0 CTGATGGGATCCACTCGTTTGTAGCAGG-ATTTCCCTTGCAGGAGGCATGGCGCTCCGAT 464
consensus_15084#2 CTGATGGGATTCACTCGTTTGTAGCAGGGATTTCCCTTGCAGGAGGCATGGCGCTCCGAT 133
consensus_15084#1 CTGATGGGATCCACTCGTTTGTAGCAGG-ATTTCCCTTGCAGGAGGCATGGCGCTCCGAT 366
********** ***************** *******************************
consensus_15084#0 GCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATG 524
consensus_15084#2 GCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATG 193
consensus_15084#1 GCATCTGGGTCATCAGACAGATGAAACGAGGCGTCCGCCGAGGGCTTGTCCATCTTGATG 426
************************************************************
consensus_15084#0 AACCCTGTTCCAGTCTGCAGGATATTGACAGTGCACACACAAATTAAGATCATAAGTGCA 584
consensus_15084#2 AACCCTGTTCCAGTC--------------------------------------------- 208
consensus_15084#1 AACCCTGTTCCAGTC--------------------------------------------- 441
***************
consensus_15084#0 CTGTGATCAGTTCGAATTAATGGATGGAAGCATGAGGGAACTAGGCAGCGACGTTACGTA 644
consensus_15084#2 ------------------------------------------------------------
consensus_15084#1 ------------------------------------------------------------
consensus_15084#0 CCGTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACT 704
consensus_15084#2 --GTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACT 266
consensus_15084#1 --GTGTGGTGCTGCTTGCCGACGCAGCCGAGATCCTTGTAGTACTCCGTCTCCACGAACT 499
**********************************************************
consensus_15084#0 CATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGA 764
consensus_15084#2 CATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGA 326
consensus_15084#1 CATCCCCTGCCTTGCCACCCTCGCACACCAATTTCTCGGTGTGGGCTTCGAGCTGCTGGA 559
************************************************************
consensus_15084#0 ACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGG 824
consensus_15084#2 ACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGG 386
consensus_15084#1 ACCTGTCGAGCTCGGGGTGGGAGTCGTCGGGGACGAGCGCGTCGGTGTAGACGGCGGAGG 619
************************************************************
consensus_15084#0 GCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCA 884
consensus_15084#2 GCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTAGTCGTAGTACTCCCGCA 446
consensus_15084#1 GCTCGCTGCGGGAGGGCTTGGAGTGGCGCTTGGGCGCCGCCTCGTCGTAGTACTCCCGCA 679
****************************************** *****************
consensus_15084#0 CCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCC 944
consensus_15084#2 CCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGGGTCGCTCCTGGCCGGCC 506
consensus_15084#1 CCTCGGCCTCCATCGCCGCCTCCCCCTCCGGGGACAGGTGCGCGTCGCTCCTGGCCGGCC 739
****************************************** *****************
consensus_15084#0 TCGACATTTCTTCCGATCTTTCGC------------------------------------ 968
consensus_15084#2 TCGACATTTCTTCCGATCTTTCG------------------------------------- 529
consensus_15084#1 TCGACATTTCTTCCGATCTTTCGCGCGAAGCGCGCTGTGCCTTCGTTAGCTAGCGCTCGT 799
***********************
consensus_15084#0 -------------------
consensus_15084#2 -------------------
consensus_15084#1 GTAAGCTTCAAGCAGTCCA 818
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||