These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1132 fasta sequence [GCNANG-ATTGCTTTGAGCTGAAGCTGTTCGTGTGACTCTTCTACACCTTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC-TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCAGAAAAGCTGCCAAACTATGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA-GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTAC-TTGTGGTGTGTGTGATGAAAC-CACAATGATCAAAC-CGAGTGTCTGAATCTCTGAATTG-TTTTTTTTAGCACAATGATTGTGTACCAAACCCTCTGTTGCTGTGTGCGGTGGCTGGCTCACCTGATGGCCTTTGTGCTACTCCTGTCGTCTTCAAAGTATCTGACGGT] [+] EMBL OSS2993A [ CNANG ATTGCTTTGANCTGAAGCTGTTCGTNTNACTCTNCNACACCTTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGANAGGTTTCANAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAAT ] [+] EMBL OSS2948A [ ccANGNATTGCTTTGAGCTGAAGCTGTTCGTNTNACNCTCCTACACCTTCCAGGCTATCCGGAATCGGNAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTNAAAGGTTTCAAAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGNTGACAGTAAAGAGGACCAGAGGCTTCCTCATCATCGTNAGCCCAAAGANTTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAnc ] [+] EMBL AF068332 [gggcaG ATTGCGTTGAGCTGAAGCTGTTCGTGTGACTCTTCTACACCTTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCAGAAAAGCTGCCAAACTATGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAAaaaaa ] [+] EMBL OSS2395A [ TTGAGCTGAAGCTGTTCGTGTGACTCTTCTACACCTTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTNAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGACTTGGGAGAATGATGA ] [+] EMBL OSS12166A [ TTGAGCTGAAGCTGTTCGTGTGACTCTTCTACACCTTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTNAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCAGAAAAGCTGCCAAACTATGAGGCTAAGCTGNAAAATTTCTTTGAAGGACACTTGCAT ] [+] EMBL CF295043 [ GACTCTTCTACACCTTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCANAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCANAAAAGCTGCCAAACTATGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAA ] [+] EMBL CF293513 [ GGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCAGAAAAGCTGCCAAACTATGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGC ] [+] EMBL AK099497 [ CCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCAGAAAAGCTGCCAAACTATGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTAC TTGTGGTGTGTGTGATGAAAC CACAATGATCAAAC CGAGTGTCTGAATCTCTGAATTG TTTTTTTTAGCACAATGATTGTGTACCAAACCCTCTGTTGCTGTGTGCGGTGGCTGGCTCACCTGATGGCCTTTGTGCTACTCCTGTCGTCTTCAAAGTATCTGACGGT] [+] EMBL CF281713 [ CCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATAGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCAGAAAAGCTGCCAAACTATGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTAT AACAGGGGGTGGAACTCAAGCTGT ] [+] EMBL CF311196 [ CCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAAGCTTCCTC TCATCGTGAGCCCAAA AATTCATTCCTCTTA CAAACTTTCAGA TTAGGAATATTAAGCTGGCGCCTGAA ] [+] EMBL AK061653 [ CTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTAC TTGTGGTGTGTGTGATGAAAC CACAATGATCAAAC CGAGTGTCTGAATCTCTGAATTG TTT ] [-] EMBL CF281714 [ ATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGATGTTGCAATGGGCTCCTACCGACATATTACATCATTTGGCAAAAATTAGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTAC ] [+] EMBL BE228420 [ GGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGANCCTGTCTGGACGCCGTACAACCGTCCCCANGACCATCTGCCAGCTAAAAAGGAATATGTCCAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAANCTCGTTAAAGGCATATCAAGATNTGCTTCCTANTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCANTATTTTGCACAAACCTGCTTAAAATCTCCCNGAAAATACGCACGTCACCATGTCNGAATGTTTATATACNATAATGACACTTCAGTCCACAGTCCGCAAGGGACTAATGACAATCANTGTACTTTGTGGTGTGTGTGATGAAAC CNCCATGATCNAAC CNAATGTCTGAATCTCTGAATTGTTTTTTTTTAACACAAT ] [-] EMBL BU673448 [ CCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCTGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACCATCATTGTACTTTGTGGTGTGTGTGATGAAACNCACCATGATCAAACNCGAGTGTC ] [-] EMBL CF293514 [ ACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGCTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTAC TTGTGGTGTGTGTGATGAAAC CACAATGATCAAAC CGAGTGTCTGAATCTCTGAATTG TTTTTTTTAGCACAATGATTGTGTACCAAAa ] consensusID : consensus_15086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CATTTGTGATGTGTNTCCCAGAAAAGCTGCCAAACTTNTGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACNCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCNCCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGANAAAATTATCAACAGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTNCCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTNAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU096103 [CATTTGTGATGTGTNTCCCAGAAAAGCTGCCAAACTTNTGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACNCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCNCCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGANAAAATTATCAACAGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTNCCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTNAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15086#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [CCCGCTTCACATTGGACAGTGACACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAGAAATTATCCACCACGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCCATGTCAGAGTGTTTATATACCATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACCATCATTGTACTTGTGGTGTGTGTGATGAAACCACATGATCAAACCGAGTGTCTGAATCTCTGAATTGTTTTTTTTAGCACATGATTGTGTACCCAACCCTCTAAAAAAAAAA] [+] EMBL BQ906367 [CCCGCTTCACATTGGACAGTGACACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAGAAATTATCCACCACGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCCATGTCAGAGTGTTTATATACCATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACCATCATTGTACTTGTGGTGTGTGTGATGAAACCACATGATCAAACCGAGTGTCTGAATCTCTGAATTGTTTTTTTTAGCACATGATTGTGTACCCAACCCTCTAAAAAAAAAA] consensusID : consensus_15086#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 486 fasta sequence [CTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACAGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATCTCTGAATTGTTTTTTTTAGCACAAAAAAAAAAAAAAAAAAAAACACTGTCAGCCGT] [-] EMBL CF311197 [CTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACAGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATCTCTGAATTGTTTTTTTTAGCACAAAAAAAAAAAAAAAAAAAAACACTGTCAGCCGT] [-] EMBL CF295044 [ ACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACAGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAA CCAAAAAAAATCTCCCTGAAAATACAAAAGTCACCATGTCAGAGTAAAAAAATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATCTCTGAA ] [+] EMBL AU097142 [ ATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACAGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAAaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15086#1 ------------------------------------------------------------ consensus_15086#3 ------------------------------------------------------------ consensus_15086#0 GCNANGATTGCTTTGAGCTGAAGCTGTTCGTGTGACTCTTCTACACCTTCCAGGCTATCC 60 consensus_15086#2 ------------------------------------------------------------ consensus_15086#1 ------------------------------------------------------------ consensus_15086#3 ------------------------------------------------------------ consensus_15086#0 GGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAG 120 consensus_15086#2 ------------------------------------------------------------ consensus_15086#1 ------------------------------------------------------------ consensus_15086#3 ------------------------------------------------------------ consensus_15086#0 GTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTAC 180 consensus_15086#2 ------------------------------------------------------------ consensus_15086#1 ------------------------------------------------------------ consensus_15086#3 ------------------------------------------------------------ consensus_15086#0 ATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATT 240 consensus_15086#2 ------------------------------------------------------------ consensus_15086#1 ------------------------------------------------------------ consensus_15086#3 ------------------------------------------------------------ consensus_15086#0 CCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGACTGG 300 consensus_15086#2 ------------------------------------------------------------ consensus_15086#1 --------------------------------------------------------CATT 4 consensus_15086#3 ------------------------------------------------------------ consensus_15086#0 GAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATT 360 consensus_15086#2 ------------------------------------------------------------ consensus_15086#1 TGTGATGTGTNTCCCAGAAAAGCTGCCAAACTTNTGAGGCTAAGCTGAAAAATTTCTTTG 64 consensus_15086#3 ------------------------------------------------------------ consensus_15086#0 TGTGATGTGTGTCC-AGAAAAGCTGCCAAACT-ATGAGGCTAAGCTGAAAAATTTCTTTG 418 consensus_15086#2 ------------------------------------------------------------ consensus_15086#1 AAGAACACTTGCATACTGATGAAGAGATACNCTATTGTCTTGAGGGAAGTGGATACTTCG 124 consensus_15086#3 ------------------------------------------------------------ consensus_15086#0 AAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCG 478 consensus_15086#2 ------------------------------------------------------------ consensus_15086#1 ATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTG 184 consensus_15086#3 ------------------------------------------------------------ consensus_15086#0 ATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTG 538 consensus_15086#2 ------------------------------------------------------------ consensus_15086#1 TTTTGCCTGCGGGAATGTATCNCCGCTTCACATTGGACAGTGACAACTACATCAAGGCAA 244 consensus_15086#3 ----------------------------------------------CTACATCAAGGCAA 14 consensus_15086#0 TTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAA 598 consensus_15086#2 ---------------------CCCGCTTCACATTGGACAGTGACA-CTACATCAAGGCAA 38 ************** consensus_15086#1 TGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGC 304 consensus_15086#3 TGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGC 74 consensus_15086#0 TGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGC 658 consensus_15086#2 TGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGC 98 ************************************************************ consensus_15086#1 CAGCTAGAAAGGAGTATGTCGANA-AAATTATCAACA--GGGGTGGAACTCAAGCTGTCG 361 consensus_15086#3 CAGCTAGAAAGGAGTATGTCGAAA-AAATTATCAACA--GGGGTGGAACTCAAGCTGTCG 131 consensus_15086#0 CAGCTAGAAAGGAGTATGTCGAAA-AAATTATCAACA--GGGGTGGAACTCAAGCTGTCG 715 consensus_15086#2 CAGCTAGAAAGGAGTATGTCGAAAGAAATTATCCACCACGGGGTGGAACTCAAGCTGTCG 158 ********************** * ******** ** ********************* consensus_15086#1 AAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACA 421 consensus_15086#3 AAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACA 191 consensus_15086#0 AAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACA 775 consensus_15086#2 AAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACA 218 ************************************************************ consensus_15086#1 GATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTNCCGACATCTTACATCA 481 consensus_15086#3 GATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCA 251 consensus_15086#0 GATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCA 835 consensus_15086#2 GATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCA 278 ******************************************* **************** consensus_15086#1 TTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTNAAAATACGCACGTCACC-AT 540 consensus_15086#3 TTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACC-AT 310 consensus_15086#0 TTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACC-AT 894 consensus_15086#2 TTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCCAT 338 *************************************** ***************** ** consensus_15086#1 GTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGAC 600 consensus_15086#3 GTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGAC 370 consensus_15086#0 GTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGAC 954 consensus_15086#2 GTCAGAGTGTTTATATACCATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGAC 398 ****************** ***************************************** consensus_15086#1 AATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATC 660 consensus_15086#3 AATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATC 430 consensus_15086#0 AATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATC 1014 consensus_15086#2 CATCATTGTACTTGTGGTGTGTGTGATGAAACCACA-TGATCAAACCGAGTGTCTGAATC 457 *********************************** *********************** consensus_15086#1 TCTGAA-----------AAAAAAAAAAAAAAAA-----------AAAAAAAAA------- 691 consensus_15086#3 TCTGAATTGTTTTTTTTAGCACAAAAAAAAAAA-----------AAAAAAAAAACACTGT 479 consensus_15086#0 TCTGAATTGTTTTTTTTAGCACAATGATTGTGT-----------ACCAAACCCTCTGTTG 1063 consensus_15086#2 TCTGAATTGTTTTTTTTAGCACATGATTGTGTACCCAACCCTCTAAAAAAAAAA------ 511 ****** * * * * *** consensus_15086#1 ------------------------------------------------------------ consensus_15086#3 CAGCCGT----------------------------------------------------- 486 consensus_15086#0 CTGTGTGCGGTGGCTGGCTCACCTGATGGCCTTTGTGCTACTCCTGTCGTCTTCAAAGTA 1123 consensus_15086#2 ------------------------------------------------------------ consensus_15086#1 --------- consensus_15086#3 --------- consensus_15086#0 TCTGACGGT 1132 consensus_15086#2 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||