These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15112#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1160 fasta sequence [GAAGCGGGAAGTACAATACTCTTCTCTTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCCCCTTGTGTGCCGCGGCAAAGCCTCTTCTCTTCTAGGGTTTCCT-CT--TCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAA-GAAAACT-GGACTGATAGTGGTGGACCGTGTGC-TCT-ATTCATCAGTTGTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTG-TGAAGACAGTG-ATCCGTTGGATGTGCTGGTTATAATGCAGGAG-CCCGTTATA-CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA-GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT-CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAAAAAAAAAAAAATTTTTCAAAAA] [+] EMBL CA767244 [GAAGCGGGAAGTACAATACTCTTCTCTTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCCCCTTGTGTGCCGCGGCAAAGCCTCTTCTCTTCTAGGGTTTCCTCCTCCTCCTCGCACCGCGCCGCATCTCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTACTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAAGCTCAGCCCCCATCAAGGCTCCTGCTCTGAATGAAAGGATACTGTCATCCATGTCCCGGAGATCTATTGCCGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAA GAAAACT GGACTGATAGTGGTGGACCGTGTGC TCT ACTCGTCAGTTGTGTATCCTCACAACTATGGATTCATTCCTCGCACGCTGTG TGAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCAGTTATA CCAGGCTGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGNTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGNCTGCAAGNGCTGC ] [+] EMBL C97139 [ ttctcttCTCGTGCCTTCTAGGGTTTCCT CT TCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGGTAAATATGAACTTGACAA GAAAACT GGACTGATAGTGGTGGACCGTGTGC TCT ATTCATCAGTTGTGTACCCTCACAA TATGGGATCATTCCTCGCACGCTGTGTTNAAG CAGTG ATCCGTTGG ] [+] EMBL OSS13207A [ T CT TCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGGAAAACTGGGNCTGATAGTGGTGGACCGTGTGCTTCTAATTAATAAGTTGTGTACCCTAANAACTATGGATTAAT ] [+] EMBL AU030320 [ GTGC TCT ATTCATCAGTTGTGT CCCTCACAACTATGGATTCATTCCTCGCACGCTGTG TGAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTATA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCNGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAAAA ] [+] EMBL AK069313 [ CATTCCTCGCACGCTGTG TGAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTATA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAGCAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGC ] [+] EMBL AU093264 [ CATTCCTCGCACGCTGTG TGAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTATA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAGATTTGCATATTTTTTTCAAAAA] [+] EMBL C98386 [ CATTCCTCGCACGCTGTG TGANGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTATA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAAAAAAAAAAAAA ] [+] EMBL AU097052 [ TGAAGAAAGTGAATCCGTTGGATGTNCTGGTTATAATGCAGGAGCCCCGTTATACCCAGGATGCTTCCTACGAGCAAAGGCCATTGGNCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGNTTGGCTGAAANCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGNCGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCNCAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa ] [-] EMBL CF294480 [ GAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTACA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCCGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTAATA GGTTCGAGCAAAAAAA ] [+] EMBL C27727 [ CAAGATTATTGCCGTTTGTNCTGATGATCCTNAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTNAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATNAGGCCATAAAGCACT CCATGGNTCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTA ] [+] EMBL BE230703 [ cGAGATCAGGCGNTWTTTTGAGGACTACAAGAAGAATGAGAACAAVANANGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACARGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAAAAAA ] consensusID : consensus_15112#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 461 fasta sequence [TCCTCTCTCTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCTTGTGTGTCGTGGCAAAGCCTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATG-AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCA-GCACATCCATGGCATGA-TCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGC-GTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGC] [+] EMBL OSC30481 [TCCTCTCTCTCTCTCTCTATGTCGGTCTTCATCTNCCTCCTGCTTCTGCTNCTGNTCTTCNTTAAAAGCTTCCAATCCCCCCTTCTCCTTGTGTGTCGTGGCAAAGCCTCTTCTCTTCTCGTGNCTTCTAGGGNTTCCTCTTCCTCGCACCGCGNCGNCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTAGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATG AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCAGGCACATCCATGGCATGATTCTTGAGATT ] [+] EMBL OSS1548A [TCCTCTCTCTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCTTGTGTGTCGTGGCAAAG CTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCG GCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTAGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAAGGATACTGTCATCTATGTCCCGGAGATCTATT ] [+] EMBL AU030319 [ CTCTCTCTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCTTGTGTGTCGTGGCAAAGCCTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCNACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAG CCCCGTCAAGGNCCCTGCTCTGAATG AAAGGATACTGTCATCTATGT CCGGAGATCTATTGCA GCACATCCATGGCATGA TCTTGAG ] [+] EMBL CF294479 [ GCAAAGCCTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATG AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCA GCACATCCATGGCATGA TCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGC GTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGC] [+] EMBL OSS10519A [ CTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATG AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCA GCACATCCATGGCATGA TCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGC] [+] EMBL AU062872 [ GCACCG GCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAG CCCCNTCAAGGCCCCTGCTCTGAATG AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCA GCACATCCATGGCATGA TCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGC GTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGC] consensusID : consensus_15112#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [TTGTCCCATTGGACTTTCCTTGCCTGCAAGTGCCTGCCTATGAGGCCCATAAAGCACTCCATGGATCCTCTTATGCTACTTTACATCCGTGGAGGGCTTCGAGGGAGGTTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTNGTCGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTCGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAGATTTGCATATTTTTTTCAAAAAAAAAAAAAAAAAAA] [+] EMBL AU096272 [TTGTCCCATTGGACTTTCCTTGCCTGCAAGTGCCTGCCTATGAGGCCCATAAAGCACTCCATGGATCCTCTTATGCTACTTTACATCCGTGGAGGGCTTCGAGGGAGGTTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTNGTCGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTCGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAGATTTGCATATTTTTTTCAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15112#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [CAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGGCCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTTCCTGTACGCCATGGCATTTCATTTAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU076100 [CAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGGCCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTTCCTGTACGCCATGGCATTTCATTTAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15112#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence [CGCGTACTNTCCTCGCTCCATGCCGCCTCGCCTCTTCGTCCCCAGATTCANATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGGCCCCGTNAAGGCCCCTGCTCTGAATTAAAGGATANTGTCATCTATGTCCCGGAGATCTATTTGCAGNANAANCATGGGANGA] [+] EMBL OSS11065A [CGCGTACTNTCCTCGCTCCATGCCGCCTCGCCTCTTCGTCCCCAGATTCANATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGGCCCCGTNAAGGCCCCTGCTCTGAATTAAAGGATANTGTCATCTATGTCCCGGAGATCTATTTGCAGNANAANCATGGGANGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15112#2 ------------------------------------------------------------ consensus_15112#3 ------------------------------------------------------------ consensus_15112#0 GAAGCGGGAAGTACAATACTCTTCTCTTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTG 60 consensus_15112#1 ------------------------------------------------------------ consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 ------------------------------------------------------------ consensus_15112#3 ------------------------------------------------------------ consensus_15112#0 CTTCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCCCCTTGTGTGCCGCGGCAAA 120 consensus_15112#1 ------------------------------------------------------------ consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 ------------------------------------------------------------ consensus_15112#3 ------------------------------------------------------------ consensus_15112#0 GCCTCTTCTCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCC 180 consensus_15112#1 ------------------------------------------------------------ consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 ------------------------------------------------------------ consensus_15112#3 ------------------------------------------------------------ consensus_15112#0 AGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAA 240 consensus_15112#1 ------------------------------------------------------------ consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 ------------------------------------------------------------ consensus_15112#3 ------------------------------------------------------------ consensus_15112#0 GCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATA 300 consensus_15112#1 ------------------------------------------------------------ consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 ------------------------------------------------------------ consensus_15112#3 ------------------------------------------------------------ consensus_15112#0 CTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGA 360 consensus_15112#1 ------------------------------------------------------------ consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 ------------------------------------------------------------ consensus_15112#3 ------------------------------------------------------------ consensus_15112#0 CCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAA 420 consensus_15112#1 ------------------------------------------------------------ consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 ------------------------------------------------------------ consensus_15112#3 ------------------------------------------------------------ consensus_15112#0 TATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGCTCTATTCATCAGTT 480 consensus_15112#1 ------------------------------------------------------------ consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 ------------------------------------------------------------ consensus_15112#3 ------------------------------------------------------------ consensus_15112#0 GTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTGTGAAGACAGTGATCCGTTG 540 consensus_15112#1 ------------------------------------------------------------ consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 ------------------------------------------------------------ consensus_15112#3 ------------------------------------------------------------ consensus_15112#0 GATGTGCTGGTTATAATGCAGGAGCCCGTTATACCAGGATGCTTCCTACGAGCAAAGGCC 600 consensus_15112#1 ------------------------------------------------------------ consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 ------------------------------------------------------------ consensus_15112#3 ------------------------------------------------------------ consensus_15112#0 ATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGT 660 consensus_15112#1 ------------------------------------------------------------ consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 ------------------------------------------------------------ consensus_15112#3 ------------------------------------------------------------ consensus_15112#0 GCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTG 720 consensus_15112#1 -----------------------------------------TCCTCTCTCTCTCTCTCTC 19 consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 --------------------------------------------------TTGTCCCATT 10 consensus_15112#3 --------------------------------------------CAAGGAGGTTGCTGTC 16 consensus_15112#0 GCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAAGGAGGTTGCTGTC 780 consensus_15112#1 TGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCCTGCTCTTCTTTAAAAGCTTCCAATCCC 79 consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 GGACTTTCCTTGCCTGCAAGTGCCTGCCTATGAGGCCCATAAAGCACTCCATGGATCCTC 70 consensus_15112#3 AATGACTTCCTGCCTGCAAGTGC-TGCTTATGAGGCC-ATAAAGCACTCCATGGATCTC- 73 consensus_15112#0 AATGACTTCCTGCCTGCAAGTGC-TGCTTATGAGGCC-ATAAAGCACTCCATGGATCTC- 837 consensus_15112#1 CCCTTCTCCTTGTGTGTCGTGGCAAAGCCTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCT 139 consensus_15112#4 ----------------------------------------------------CGCGTACT 8 * consensus_15112#2 TTATGCTACTTTACATCCGTGGAGGGCTTCGAGGGAGGTTAGACTTGTGCCGCTTCCTGG 130 consensus_15112#3 -TATGCTACTT-ACATC-GTGGAGGGCTT---GAGGAGGTAGACTTGTGCCGCTTCCTGG 127 consensus_15112#0 -TATGCTACTT-ACATC-GTGGAGGGCTT---GAGGAGGTAGACTTGTGCCGCTTCCTGG 891 consensus_15112#1 CTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCT 199 consensus_15112#4 NT-CCTCGCTCCATGCCGCCTCGCCTCTTCGTCCCCAGATTCANATCTACTCCTACTCCT 67 * * * *** * * * * * * ** * consensus_15112#2 ACCGAGAGGATGGATGTTGACGAAAATTNGTCGGAGATATTATCACCTTATGAACAAATA 190 consensus_15112#3 ACCGAGAGGATGGATATTGAACGAACACTTTTGTGGAG--CATGGCCTGCTGGGGCCTCT 185 consensus_15112#0 ACCGAGAGGATGGATGTTGACGAAAA--TTGTGGAGATATTATCACCTTATGAACAAATA 949 consensus_15112#1 ACTACCAAGGTTGTTGCC--ATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCT 257 consensus_15112#4 ACTACCAAGGTTGTTGCC--ATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCT 125 ** * * * * * * ** * consensus_15112#2 CTATTATTTTGTTCGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAG 250 consensus_15112#3 GGAACAAGTTATGCTGT---TAACAAAATCAGGGCTCATTTCC--TGTACGCCATGGCAT 240 consensus_15112#0 CTATTATTTTGT-TGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAG 1008 consensus_15112#1 CAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATACTGTCA-TCTATGTCCCGGAGA 316 consensus_15112#4 CAGGCCCCGTNAAGGCCCCTGCTCTGAATTAAAGGATANTGTCA-TCTATGTCCCGGAGA 184 * * * * * * * * consensus_15112#2 CACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTG 310 consensus_15112#3 TTCATTTAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 270 consensus_15112#0 CACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTG 1068 consensus_15112#1 TCTATT-GCAGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATT 375 consensus_15112#4 TCTATTTGCAGNANAANCATGGGANGA--------------------------------- 211 * * * * * consensus_15112#2 CCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGT 370 consensus_15112#3 ------------------------------------------------------------ consensus_15112#0 CCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGT 1128 consensus_15112#1 CAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAAC 435 consensus_15112#4 ------------------------------------------------------------ consensus_15112#2 TCGAGCAAAGATTTGCATATTTTTTTCAAAAAAAAAAAAAAAAAAA 416 consensus_15112#3 ---------------------------------------------- consensus_15112#0 TCGAGCAAAAAAAAAAAAAAATTTTTCAAAAA-------------- 1160 consensus_15112#1 TGGACTGATAGTGGTGGACCGTGTGC-------------------- 461 consensus_15112#4 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||