Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 15112 cluster # 15112       Sequences # 20       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15112#0 length = 1160 sequences # 11  
consensus_15112#1 length = 461 sequences # 6  
consensus_15112#2 length = 416 sequences # 1  
consensus_15112#3 length = 270 sequences # 1  
consensus_15112#4 length = 211 sequences # 1  

consensusID : consensus_15112#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1160
fasta sequence
                              [GAAGCGGGAAGTACAATACTCTTCTCTTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCCCCTTGTGTGCCGCGGCAAAGCCTCTTCTCTTCTAGGGTTTCCT-CT--TCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAA-GAAAACT-GGACTGATAGTGGTGGACCGTGTGC-TCT-ATTCATCAGTTGTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTG-TGAAGACAGTG-ATCCGTTGGATGTGCTGGTTATAATGCAGGAG-CCCGTTATA-CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA-GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT-CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAAAAAAAAAAAAATTTTTCAAAAA]

[+] EMBL CA767244             [GAAGCGGGAAGTACAATACTCTTCTCTTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCCCCTTGTGTGCCGCGGCAAAGCCTCTTCTCTTCTAGGGTTTCCTCCTCCTCCTCGCACCGCGCCGCATCTCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTACTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAAGCTCAGCCCCCATCAAGGCTCCTGCTCTGAATGAAAGGATACTGTCATCCATGTCCCGGAGATCTATTGCCGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAA GAAAACT GGACTGATAGTGGTGGACCGTGTGC TCT ACTCGTCAGTTGTGTATCCTCACAACTATGGATTCATTCCTCGCACGCTGTG TGAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCAGTTATA CCAGGCTGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGNTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGNCTGCAAGNGCTGC                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL C97139               [                                                                                                                   ttctcttCTCGTGCCTTCTAGGGTTTCCT CT  TCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGGTAAATATGAACTTGACAA GAAAACT GGACTGATAGTGGTGGACCGTGTGC TCT ATTCATCAGTTGTGTACCCTCACAA TATGGGATCATTCCTCGCACGCTGTGTTNAAG CAGTG ATCCGTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSS13207A            [                                                                                                                                               T CT  TCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGGAAAACTGGGNCTGATAGTGGTGGACCGTGTGCTTCTAATTAATAAGTTGTGTACCCTAANAACTATGGATTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU030320             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTGC TCT ATTCATCAGTTGTGT CCCTCACAACTATGGATTCATTCCTCGCACGCTGTG TGAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTATA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCNGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAAAA                    ]
[+] EMBL AK069313             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATTCCTCGCACGCTGTG TGAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTATA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAGCAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGC                          ]
[+] EMBL AU093264             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATTCCTCGCACGCTGTG TGAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTATA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAGATTTGCATATTTTTTTCAAAAA]
[+] EMBL C98386               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATTCCTCGCACGCTGTG TGANGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTATA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAAAAAAAAAAAAA           ]
[+] EMBL AU097052             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGAAGAAAGTGAATCCGTTGGATGTNCTGGTTATAATGCAGGAGCCCCGTTATACCCAGGATGCTTCCTACGAGCAAAGGCCATTGGNCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGNTTGGCTGAAANCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGNCGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCNCAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa         ]
[-] EMBL CF294480             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTACA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCCGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTAATA GGTTCGAGCAAAAAAA                   ]
[+] EMBL C27727               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAAGATTATTGCCGTTTGTNCTGATGATCCTNAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTNAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATNAGGCCATAAAGCACT CCATGGNTCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTA                                                                          ]
[+] EMBL BE230703             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             cGAGATCAGGCGNTWTTTTGAGGACTACAAGAAGAATGAGAACAAVANANGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACARGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAAAAAA                  ]


>consensus_15112#0 GAAGCGGGAAGTACAATACTCTTCTCTTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTG CTTCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCCCCTTGTGTGCCGCGGCAAA GCCTCTTCTCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCC AGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAA GCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATA CTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGA CCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAA TATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGCTCTATTCATCAGTT GTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTGTGAAGACAGTGATCCGTTG GATGTGCTGGTTATAATGCAGGAGCCCGTTATACCAGGATGCTTCCTACGAGCAAAGGCC ATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGT GCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTG GCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAAGGAGGTTGCTGTC AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATGGATCTCTAT GCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGG ATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTG TTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAA CTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATAT GGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAAAA AAAAAAAAATTTTTCAAAAA



consensusID : consensus_15112#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 461
fasta sequence
                              [TCCTCTCTCTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCTTGTGTGTCGTGGCAAAGCCTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATG-AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCA-GCACATCCATGGCATGA-TCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGC-GTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGC]

[+] EMBL OSC30481             [TCCTCTCTCTCTCTCTCTATGTCGGTCTTCATCTNCCTCCTGCTTCTGCTNCTGNTCTTCNTTAAAAGCTTCCAATCCCCCCTTCTCCTTGTGTGTCGTGGCAAAGCCTCTTCTCTTCTCGTGNCTTCTAGGGNTTCCTCTTCCTCGCACCGCGNCGNCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTAGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATG AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCAGGCACATCCATGGCATGATTCTTGAGATT                                                                                                              ]
[+] EMBL OSS1548A             [TCCTCTCTCTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCTTGTGTGTCGTGGCAAAG CTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCG GCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTAGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAAGGATACTGTCATCTATGTCCCGGAGATCTATT                                                                                                                                              ]
[+] EMBL AU030319             [  CTCTCTCTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCTTGTGTGTCGTGGCAAAGCCTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCNACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAG CCCCGTCAAGGNCCCTGCTCTGAATG AAAGGATACTGTCATCTATGT CCGGAGATCTATTGCA GCACATCCATGGCATGA TCTTGAG                                                                                                                 ]
[+] EMBL CF294479             [                                                                                                    GCAAAGCCTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATG AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCA GCACATCCATGGCATGA TCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGC GTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGC]
[+] EMBL OSS10519A            [                                                                                                                  CTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATG AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCA GCACATCCATGGCATGA TCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGC]
[+] EMBL AU062872             [                                                                                                                                                  GCACCG GCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAG CCCCNTCAAGGCCCCTGCTCTGAATG AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCA GCACATCCATGGCATGA TCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGC GTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGC]


>consensus_15112#1 TCCTCTCTCTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCCTGCTCTTC TTTAAAAGCTTCCAATCCCCCCTTCTCCTTGTGTGTCGTGGCAAAGCCTCTTCTCTTCTC GTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATT CAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGT GGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATACTGTC ATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGACCTGG TGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGA ACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGC



consensusID : consensus_15112#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence
                              [TTGTCCCATTGGACTTTCCTTGCCTGCAAGTGCCTGCCTATGAGGCCCATAAAGCACTCCATGGATCCTCTTATGCTACTTTACATCCGTGGAGGGCTTCGAGGGAGGTTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTNGTCGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTCGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAGATTTGCATATTTTTTTCAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU096272             [TTGTCCCATTGGACTTTCCTTGCCTGCAAGTGCCTGCCTATGAGGCCCATAAAGCACTCCATGGATCCTCTTATGCTACTTTACATCCGTGGAGGGCTTCGAGGGAGGTTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTNGTCGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTCGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAGATTTGCATATTTTTTTCAAAAAAAAAAAAAAAAAAA]


>consensus_15112#2 TTGTCCCATTGGACTTTCCTTGCCTGCAAGTGCCTGCCTATGAGGCCCATAAAGCACTCC ATGGATCCTCTTATGCTACTTTACATCCGTGGAGGGCTTCGAGGGAGGTTAGACTTGTGC CGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTNGTCGGAGATATTATCACCTTA TGAACAAATACTATTATTTTGTTCGGTGTGTGATATACACCGGTATTATTCACATTTCAA GTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATG GCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTA TTGATATGGTTCGAGCAAAGATTTGCATATTTTTTTCAAAAAAAAAAAAAAAAAAA



consensusID : consensus_15112#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence
                              [CAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGGCCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTTCCTGTACGCCATGGCATTTCATTTAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU076100             [CAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGGCCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTTCCTGTACGCCATGGCATTTCATTTAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_15112#3 CAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCA CTCCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGC TTCCTGGACCGAGAGGATGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGG CCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTTCCTGTACGCCATGGCAT TTCATTTAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_15112#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence
                              [CGCGTACTNTCCTCGCTCCATGCCGCCTCGCCTCTTCGTCCCCAGATTCANATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGGCCCCGTNAAGGCCCCTGCTCTGAATTAAAGGATANTGTCATCTATGTCCCGGAGATCTATTTGCAGNANAANCATGGGANGA]

[+] EMBL OSS11065A            [CGCGTACTNTCCTCGCTCCATGCCGCCTCGCCTCTTCGTCCCCAGATTCANATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGGCCCCGTNAAGGCCCCTGCTCTGAATTAAAGGATANTGTCATCTATGTCCCGGAGATCTATTTGCAGNANAANCATGGGANGA]


>consensus_15112#4 CGCGTACTNTCCTCGCTCCATGCCGCCTCGCCTCTTCGTCCCCAGATTCANATCTACTCC TACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGAC AGGCTCAGGCCCCGTNAAGGCCCCTGCTCTGAATTAAAGGATANTGTCATCTATGTCCCG GAGATCTATTTGCAGNANAANCATGGGANGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15112#2      ------------------------------------------------------------
consensus_15112#3      ------------------------------------------------------------
consensus_15112#0      GAAGCGGGAAGTACAATACTCTTCTCTTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTG 60
consensus_15112#1      ------------------------------------------------------------
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      ------------------------------------------------------------
consensus_15112#3      ------------------------------------------------------------
consensus_15112#0      CTTCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCCCCTTGTGTGCCGCGGCAAA 120
consensus_15112#1      ------------------------------------------------------------
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      ------------------------------------------------------------
consensus_15112#3      ------------------------------------------------------------
consensus_15112#0      GCCTCTTCTCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCC 180
consensus_15112#1      ------------------------------------------------------------
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      ------------------------------------------------------------
consensus_15112#3      ------------------------------------------------------------
consensus_15112#0      AGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAA 240
consensus_15112#1      ------------------------------------------------------------
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      ------------------------------------------------------------
consensus_15112#3      ------------------------------------------------------------
consensus_15112#0      GCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATA 300
consensus_15112#1      ------------------------------------------------------------
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      ------------------------------------------------------------
consensus_15112#3      ------------------------------------------------------------
consensus_15112#0      CTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGA 360
consensus_15112#1      ------------------------------------------------------------
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      ------------------------------------------------------------
consensus_15112#3      ------------------------------------------------------------
consensus_15112#0      CCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAA 420
consensus_15112#1      ------------------------------------------------------------
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      ------------------------------------------------------------
consensus_15112#3      ------------------------------------------------------------
consensus_15112#0      TATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGCTCTATTCATCAGTT 480
consensus_15112#1      ------------------------------------------------------------
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      ------------------------------------------------------------
consensus_15112#3      ------------------------------------------------------------
consensus_15112#0      GTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTGTGAAGACAGTGATCCGTTG 540
consensus_15112#1      ------------------------------------------------------------
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      ------------------------------------------------------------
consensus_15112#3      ------------------------------------------------------------
consensus_15112#0      GATGTGCTGGTTATAATGCAGGAGCCCGTTATACCAGGATGCTTCCTACGAGCAAAGGCC 600
consensus_15112#1      ------------------------------------------------------------
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      ------------------------------------------------------------
consensus_15112#3      ------------------------------------------------------------
consensus_15112#0      ATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGT 660
consensus_15112#1      ------------------------------------------------------------
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      ------------------------------------------------------------
consensus_15112#3      ------------------------------------------------------------
consensus_15112#0      GCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTG 720
consensus_15112#1      -----------------------------------------TCCTCTCTCTCTCTCTCTC 19
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      --------------------------------------------------TTGTCCCATT 10
consensus_15112#3      --------------------------------------------CAAGGAGGTTGCTGTC 16
consensus_15112#0      GCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAAGGAGGTTGCTGTC 780
consensus_15112#1      TGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCCTGCTCTTCTTTAAAAGCTTCCAATCCC 79
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      GGACTTTCCTTGCCTGCAAGTGCCTGCCTATGAGGCCCATAAAGCACTCCATGGATCCTC 70
consensus_15112#3      AATGACTTCCTGCCTGCAAGTGC-TGCTTATGAGGCC-ATAAAGCACTCCATGGATCTC- 73
consensus_15112#0      AATGACTTCCTGCCTGCAAGTGC-TGCTTATGAGGCC-ATAAAGCACTCCATGGATCTC- 837
consensus_15112#1      CCCTTCTCCTTGTGTGTCGTGGCAAAGCCTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCT 139
consensus_15112#4      ----------------------------------------------------CGCGTACT 8
                                                                            *      

consensus_15112#2      TTATGCTACTTTACATCCGTGGAGGGCTTCGAGGGAGGTTAGACTTGTGCCGCTTCCTGG 130
consensus_15112#3      -TATGCTACTT-ACATC-GTGGAGGGCTT---GAGGAGGTAGACTTGTGCCGCTTCCTGG 127
consensus_15112#0      -TATGCTACTT-ACATC-GTGGAGGGCTT---GAGGAGGTAGACTTGTGCCGCTTCCTGG 891
consensus_15112#1      CTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCT 199
consensus_15112#4      NT-CCTCGCTCCATGCCGCCTCGCCTCTTCGTCCCCAGATTCANATCTACTCCTACTCCT 67
                        *      *       *         ***        * *  *  * * *  ** *    

consensus_15112#2      ACCGAGAGGATGGATGTTGACGAAAATTNGTCGGAGATATTATCACCTTATGAACAAATA 190
consensus_15112#3      ACCGAGAGGATGGATATTGAACGAACACTTTTGTGGAG--CATGGCCTGCTGGGGCCTCT 185
consensus_15112#0      ACCGAGAGGATGGATGTTGACGAAAA--TTGTGGAGATATTATCACCTTATGAACAAATA 949
consensus_15112#1      ACTACCAAGGTTGTTGCC--ATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCT 257
consensus_15112#4      ACTACCAAGGTTGTTGCC--ATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCT 125
                       **    * * * * *                 *  **     *                 

consensus_15112#2      CTATTATTTTGTTCGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAG 250
consensus_15112#3      GGAACAAGTTATGCTGT---TAACAAAATCAGGGCTCATTTCC--TGTACGCCATGGCAT 240
consensus_15112#0      CTATTATTTTGT-TGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAG 1008
consensus_15112#1      CAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATACTGTCA-TCTATGTCCCGGAGA 316
consensus_15112#4      CAGGCCCCGTNAAGGCCCCTGCTCTGAATTAAAGGATANTGTCA-TCTATGTCCCGGAGA 184
                                *                *          * *  *  *  * *         

consensus_15112#2      CACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTG 310
consensus_15112#3      TTCATTTAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 270
consensus_15112#0      CACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTG 1068
consensus_15112#1      TCTATT-GCAGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATT 375
consensus_15112#4      TCTATTTGCAGNANAANCATGGGANGA--------------------------------- 211
                          *     *    *        *  *                                 

consensus_15112#2      CCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGT 370
consensus_15112#3      ------------------------------------------------------------
consensus_15112#0      CCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGT 1128
consensus_15112#1      CAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAAC 435
consensus_15112#4      ------------------------------------------------------------
                                                                                   

consensus_15112#2      TCGAGCAAAGATTTGCATATTTTTTTCAAAAAAAAAAAAAAAAAAA 416
consensus_15112#3      ----------------------------------------------
consensus_15112#0      TCGAGCAAAAAAAAAAAAAAATTTTTCAAAAA-------------- 1160
consensus_15112#1      TGGACTGATAGTGGTGGACCGTGTGC-------------------- 461
consensus_15112#4      ----------------------------------------------
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)