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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1780 fasta sequence
[GTATCAAAATTAAAAGCATTTGGGCAGCTATATATCTCTCTGTGATCCAAGCTCGCTTCTGAACTAGTTTGACATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGAGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAGAGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGAGAGTGAATGGTGTTGGGGCACTCTGCTCATTTGGGGTTGCGGCTGCCACCTTGTGCATCTTTCTGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTGGCTACTACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTATTAGATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTATATTGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTAT-TTTTCAGA---AAAAAATTCATCCATGCAACCACCCGGCCGCGCGTGCCGGCACGCATCAGCACCACTCATTTGCCGTCTTCAACTCTCACAAGTTTTCGCCATTATGTATATGGCCAAGATAGTCGTCACCGGACAGGAGCTGTTAAGCAAGCTTACTGTCAGCAGCTTGGGATGGAAGGCAGGCAACAGAGGAGGAGGTGTCCTAGCTTTTGTTGGCTCCTGAGACATGCGTGCAGAGGATTGGTGGCTGTTCGTCTCTCGCGTTCACGGGCTGCTGCGTCCTGCCAAATCGGCCCGATTCGCCTGCGCTAAAACATCGGTCACTCGGACACCACCAAGGGTCAAGGAAAGGGAGAATCAGCATGTCTCAGTTCTCAAGATGATTTGCAGAGCTCACTGGGATCCTCTGTGCCTGCCAGGATTTTCGTCAAAGAGATGCAAGTGCTAAGTATATCATGGTTATCCCTCTAAGACCAGGTACAATAGAAGATTATTAGCCAGCTGCAAATATATTTTAATAAGATAAAAGACGAGAGAGAAGAGCAGCGGGCTACAGATCTGTAACCAGCTGCAGGCTGCAGCACGGACTTAAAGACGCAATGTGTGCATGACAGGTGCGACCATATATAAATAGTATAGTAAGCAACTATTGTATTAATTGTCTATTAGATCGGCTATAGATGAATTGGAGGTAGTAGTGGGCTATATTATTAAACTTGCTCTAAGAGCGAGTACAATAGCAAGCTATAAGTTAAGCTGTAAGCATATGTGGAGAAGAGAAGAAAGAAGAGAGAAGGAAAGCGGGCTACAGATTTGTAGCCAGCTGCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF297774 [GTATCAAAATTAAAAGCATTTGGGCAGCTATATATCTCTCTGTGATCCAAGCTCGCTTCTGAACTAGTTTGACATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGAGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGT ]
[+] EMBL CF294187 [ TAAAAGCATTTGGGCAGCTATATATCTCTCTGTGATCCAAGCTCGCTTCTGAACTAGTTTGACATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGAGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAGAGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGAGAGTGAATGGTGTTGGGGCACTCTGCTCATTTGGGGTTGCGGCTGCCACCTTGTGCATCTTTCTGCTTGGT ]
[-] EMBL CF293582 [ GTGGGGAAGCTGAGAGTGAATGGTGTTGGGGCACTCTGCTCATTTGGGGTTGCGGCTGCCACCTTGTGCATCTTTCTGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTGGCTACTACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTATTAGATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTATATTGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTAT TTTTCAGA AAAAA ]
[-] EMBL CF293508 [ TGCGGCTGCCACCTTGTGCATCTTTCTGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTGGCTACTACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTATTAGATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTATATTGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCGACCTCCAATAT TTTTCAGATTTAAAAAA ]
[+] EMBL AK107762 [ GATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTATATTGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTATATTTTCAAT CATCCATTCATCCATGCAACCACCCGGCCGCGCGTGCCGGCACGCATCAGCACCACTCATTTGCCGTCTTCAACTCTCACAAGTTTTCGCCATTATGTATATGGCCAAGATAGTCGTCACCGGACAGGAGCTGTTAAGCAAGCTTACTGTCAGCAGCTTGGGATGGAAGGCAGGCAACAGAGGAGGAGGTGTCCTAGCTTTTGTTGGCTCCTGAGACATGCGTGCAGAGGATTGGTGGCTGTTCGTCTCTCGCGTTCACGGGCTGCTGCGTCCTGCCAAATCGGCCCGATTCGCCTGCGCTAAAACATCGGTCACTCGGACACCACCAAGGGTCAAGGAAAGGGAGAATCAGCATGTCTCAGTTCTCAAGATGATTTGCAGAGCTCACTGGGATCCTCTGTGCCTGCCAGGATTTTCGTCAAAGAGATGCAAGTGCTAAGTATATCATGGTTATCCCTCTAAGACCAGGTACAATAGAAGATTATTAGCCAGCTGCAAATATATTTTAATAAGATAAAAGACGAGAGAGAAGAGCAGCGGGCTACAGATCTGTAACCAGCTGCAGGCTGCAGCACGGACTTAAAGACGCAATGTGTGCATGACAGGTGCGACCATATATAAATAGTATAGTAAGCAACTATTGTATTAATTGTCTATTAGATCGGCTATAGATGAATTGGAGGTAGTAGTGGGCTATATTATTAAACTTGCTCTAAGAGCGAGTACAATAGCAAGCTATAAGTTAAGCTGTAAGCATATGTGGAGAAGAGAAGAAAGAAGAGAGAAGGAAAGCGGGCTACAGATTTGTAGCCAGCTGCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 970 fasta sequence
[AGGAGTAGAAAGTGATCCAAGCTCGCTTCTGAACTAGTTTGACATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGAGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAGAGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGAGAGTGAAT-GGTG-TTGGGGCACTCTGCTCATTTGGGG-T-TGCGGCTGCCACCTTGTGCATCTTTCTGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTG-GCTACTACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTATTAGATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTATATTGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTATATTTTCAGATCTACTAGATGTGCATATTTTGGTTGATCAAAAAACAGAAATGAATAGATACTACTAGATGCAGAAAAAAAAAAAAA]
[+] EMBL CF279800 [AGGAGTAGAAAGTGATCCAAGCTCGCTTCTGAACTAGTTTGACATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGAGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAGAGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGAGAGTGAAT GGTG TTGGGGCACTCTGCTCATTTGGGG T TGCGGCTGCCACCTTGTGCA ]
[+] EMBL CF295285 [ GTGATCCAAGCTCGCTTCTGAACTAGTTTGACATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGAGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAGAGGAAGAAGGTGCCCANAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGAAAGTGAAT GGTG TTGGGGCACTCTGCTCATTTGGGG T TGCG ]
[+] EMBL CF293581 [ TTGACATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGAGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAGAGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGAGAGTGAAT GGTG TTGGGGCACTCTG ]
[+] EMBL CF311140 [ TTGACATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGAGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAGAGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGAGAGTGAAT GGTGNTTGGGGCACTCTGCTCATTTGGGGTT TGCGGCTGCCACCTTGTGCATCTTTCTGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATG ]
[+] EMBL AK070959 [ ATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGAGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAGAGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGAGAGTGAAT GGTG TTGGGGCACTCTGCTCATTTGGGG T TGCGGCTGCCACCTTGTGCATCTTTCTGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTG GCTACTACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTATTAGATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTATATTGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTATATTTTCAGATCTACTAGATGTGCATATT ]
[+] EMBL CF293507 [ ATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGGGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAGAGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGAGAGTGAATGGGTG TTGGGGCACTCTGCTCATTTGGGG TNTGCGGCTGCCACCTTGTGCATCTTTCTGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACA ]
[-] EMBL CF295286 [ ATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAGAGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGAGAGTGAAT GGTG TTGGGGCACTCTGCTCATTTGGGG T TGCGGCTGCCACCTTGTGCATCTTTCTGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTG GCTACTACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTATTAGATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTATATTGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTATATTTTCAGATCTACTAGATGTGCATATTTTGGTTGATCAAAAAA ]
[-] EMBL CF311141 [ GGGGAAGCTGAGAGTGAAT GGTG TTGGGGCACTCTGCTCATTTGGGG T TGCGGCTGCCACCTTGTGCATCTTTCTGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTG GCTACTACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTATTAGATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTATATTGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTATATTTTCAGATCTACTAGATGTGCATATTTTGGTTGATCAAATTGCAGAAATGAATAGATACTACTAGATGCAGAAAAAAAAAAAAA]
[-] EMBL CF294188 [ GGCACTCTGCTCATTTGGGG T TGCGGCTGCCACCTTGTGCATCTTTCTGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTG GCTACTACGATGGATTTTAATGTGTTAGAAACCTTGATAAAATATTTCTTTTCATAGTCAAGTATTAGATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTATATTGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTATATTTTCAGATCTACTAGATGAAAATA TTTGG TGATCAAAAA ]
[-] EMBL CF279801 [ aTGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCAAAAAGAGAGCTACTACGATGGATTTTAAAAAATTAGAAACCTTGATAAAAAAAAACTTTTCATAGTCAAGTATTAGATCCAGGTGTTCTCTATGATAGCCATATATATTCTCATATTCTTTATATTGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCA ]
[-] EMBL CF293828 [ AGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTG GCTACTACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTATTAGATACAGGTGTTCTCTATGATAACCATCTATATTCTCATATTCTTTATATTGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTATATTTTCAGATCTACTAGATGTGCATATTTTGGTTGATCAA ]
[-] EMBL CF293797 [ GACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTG GCTACTACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTATTAGATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTATATTGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTATATTTTCAGATCTACTAGATGTGCATATTTTGGTTGATCNAAAAAAAAAAA ]
consensusID : consensus_15114#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 964 fasta sequence
[CGAATTCCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAGTTTGACATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGAGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAGAGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGANAGTGAATGGTGTTGGGGCACTCTGCTCATTTGGGGTTGCGGCTGCCACCTTGTGCATCTTTCTGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTGGCTACTACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTAAAAAATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTAAAATGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTATATTTTCAGATCTACTAGATGTGCATATTTTGGTTGATCAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTGCGT]
[+] EMBL CF293827 [CGAATTCCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAGTTTGACATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGAGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAGAGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGANAGTGAATGGTGTTGGGGCACTCTGCTCATTTGGGGTTGCGGCTGCCACCTTGTGCATCTTTCT ]
[-] EMBL CF295521 [ GATCAATGTGTT AAGAGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGAGAGTGAATGGTGTTGGGGCACTCTGCTCATTTGGGGTTGCGGCTGCCACCTTGTGCATCTTTCTGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGATGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAGCTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTGGCTACTACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTAAAAAATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTAAAATGGTTTGGTCCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTATATTTTCAGATCTACTAGATGTGCATATTTTGGTTGATCAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTGCGT]
consensusID : consensus_15114#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[TTGACATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCGTGGCACTGTTGTTGGTAAGGATGATCAGTTCTTGTTTGGTGCCAGTTTGATCATGATCAACATGGACCATTTCACCCCTGCATCTCACCCTTCTCCCTATGATTGTATCCTAGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGAGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAAT]
[+] EMBL CF293796 [TTGACATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCCTGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCGTGGCACTGTTGTTGGTAAGGATGATCAGTTCTTGTTTGGTGCCAGTTTGATCATGATCAACATGGACCATTTCACCCCTGCATCTCACCCTTCTCCCTATGATTGTATCCTAGATGATGAGACCAAGAATATATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCAAGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTGAGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAGTTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15114#1 ----------------------------------------------------------AG 2
consensus_15114#2 -----------------------------------------------------CGAATTC 7
consensus_15114#0 ----------------------------GTATCAAAATTAAAAGCATTTGGGCAGCTATA 32
consensus_15114#3 TTGACATGAGCAGAGGTACTGCTTCCATGGATGCAATCAGCCTAGATGAGTGGGAGCTCC 60
consensus_15114#1 GAGTAGAAAGTGATCCAAGCTCGCTTCTGAACTAGTTTGACATGAGCAGAGGTACTGCT- 61
consensus_15114#2 CCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAGTTTGACATGAGCAGAGGTACTGCT- 66
consensus_15114#0 TATCTCTCTGTGATCCAAGCTCGCTTCTGAACTAGTTTGACATGAGCAGAGGTACTGCT- 91
consensus_15114#3 TGCCTGACAACAAGAGTTCCTACTTCATGGAGGAGTTCACCAGTGACCGTGGCACTGTTG 120
* * * **** ** * * ** **** *
consensus_15114#1 TCCATGGATGCAATCAGC-CTAGATGAGTGGGAGCTCCTGCCTGA-CAACAAGAGTTCCT 119
consensus_15114#2 TCCATGGATGCAATCAGC-CTAGATGAGTGGGAGCTCCTGCCTGA-CAACAAGAGTTCCT 124
consensus_15114#0 TCCATGGATGCAATCAGC-CTAGATGAGTGGGAGCTCCTGCCTGA-CAACAAGAGTTCCT 149
consensus_15114#3 TTGGTAAGGATGATCAGTTCTTGTTTGGTGCCAGTTTGATCATGATCAACATGGACCATT 180
* * ***** ** * * *** ** * * *** ***** * *
consensus_15114#1 ACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATA 179
consensus_15114#2 ACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATA 184
consensus_15114#0 ACTTCATGGAGGAGTTCACCAGTGACCATGGCACTGTTGTTGATGATGAGACCAAGAATA 209
consensus_15114#3 TCACCCCTGCATCTCACCCTTCTCCCTATGATTGTATCCTAGATGATGAGACCAAGAATA 240
* * * * * * * *** * * * *******************
consensus_15114#1 TATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCA 239
consensus_15114#2 TATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCA 244
consensus_15114#0 TATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCA 269
consensus_15114#3 TATTTCTGCCTATCCATCTATCAGAAGAGGTCTATGTGGGTGATCCTGTCATCAAGTTCA 300
************************************************************
consensus_15114#1 AGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTG 299
consensus_15114#2 AGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTG 304
consensus_15114#0 AGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTG 329
consensus_15114#3 AGGACATCGATGTCGTGAAGATTGAATCGTACCGAGAAGAGTTCGTGCCTAAGGTGACTG 360
************************************************************
consensus_15114#1 AGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAG 359
consensus_15114#2 AGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAG 364
consensus_15114#0 AGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAG 389
consensus_15114#3 AGATATTTGATGCAGAAGAGGAGGCAGAGATGATCAAGAGTCCCGTCAGTGCAGAGGAAG 420
************************************************************
consensus_15114#1 TTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAG 419
consensus_15114#2 TTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAG 424
consensus_15114#0 TTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAATGTGTTGAAG 449
consensus_15114#3 TTGATGTCGACGATGATGATGAGGTGATGGCTATGGTTGCACCTGATCAAT--------- 471
***************************************************
consensus_15114#1 AGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGAGAG 479
consensus_15114#2 AGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGANAG 484
consensus_15114#0 AGGAAGAAGGTGCCCAGAAAGACAAGGAACACAATGGTTTCAGTGTGGGGAAGCTGAGAG 509
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 TGAATGGTGTTGGGGCACTCTGCTCATTTGGGGTTGCGGCTGCCACCTTGTGCATCTTTC 539
consensus_15114#2 TGAATGGTGTTGGGGCACTCTGCTCATTTGGGGTTGCGGCTGCCACCTTGTGCATCTTTC 544
consensus_15114#0 TGAATGGTGTTGGGGCACTCTGCTCATTTGGGGTTGCGGCTGCCACCTTGTGCATCTTTC 569
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 TGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGA 599
consensus_15114#2 TGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGA 604
consensus_15114#0 TGCTTGGTGGCAGGCAGCAGCAGCTGCACAAGACGCAGAATCAGAAGACCCCGTTCCAGA 629
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 TGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAG 659
consensus_15114#2 TGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAG 664
consensus_15114#0 TGTATGCTGATAATGAGAGAATTCAGCAGGTTGTGCAGCAAGCCTCGAGACTGAATCAAG 689
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 CTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTGGCTACT 719
consensus_15114#2 CTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTGGCTACT 724
consensus_15114#0 CTGTGTCAACAGTAATGGGAGGTGCATCCACAAGGGCAAGCATATCATTTGGTGGCTACT 749
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 ACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTATT 779
consensus_15114#2 ACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTAAA 784
consensus_15114#0 ACGATGGATTTTAATGTGTTAGAAACCTTGATAGAATATTTCTTTTCATAGTCAAGTATT 809
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 AGATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTATATTGGTTTGGT 839
consensus_15114#2 AAATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTAAAATGGTTTGGT 844
consensus_15114#0 AGATCCAGGTGTTCTCTATGATAGCCATCTATATTCTCATATTCTTTATATTGGTTTGGT 869
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 CCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTATATTTTCAGATCTACT 899
consensus_15114#2 CCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTATATTTTCAGATCTACT 904
consensus_15114#0 CCAAGTGTTCTTCATGTACAATATCATTCAACCAACCTCCTGTATTTTTCAGAAAAAAAT 929
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 AGATGTGCATATTTTGGTTGATCAAAAAACAGAAATGAATAGATACTA-CTAGATGCAGA 958
consensus_15114#2 AGATGTGCATATTTTGGTTGATCAAAAAAAAAAAA--AAAAAACACTG-TCA--TGCCGT 959
consensus_15114#0 TCATCCATGCAACCACCCGGCCGCGCGTGCCGGCACGCATCAGCACCACTCATTTGCCGT 989
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 AAAAAAAAAAAA------------------------------------------------ 970
consensus_15114#2 TGCGT------------------------------------------------------- 964
consensus_15114#0 CTTCAACTCTCACAAGTTTTCGCCATTATGTATATGGCCAAGATAGTCGTCACCGGACAG 1049
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 ------------------------------------------------------------
consensus_15114#2 ------------------------------------------------------------
consensus_15114#0 GAGCTGTTAAGCAAGCTTACTGTCAGCAGCTTGGGATGGAAGGCAGGCAACAGAGGAGGA 1109
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 ------------------------------------------------------------
consensus_15114#2 ------------------------------------------------------------
consensus_15114#0 GGTGTCCTAGCTTTTGTTGGCTCCTGAGACATGCGTGCAGAGGATTGGTGGCTGTTCGTC 1169
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 ------------------------------------------------------------
consensus_15114#2 ------------------------------------------------------------
consensus_15114#0 TCTCGCGTTCACGGGCTGCTGCGTCCTGCCAAATCGGCCCGATTCGCCTGCGCTAAAACA 1229
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 ------------------------------------------------------------
consensus_15114#2 ------------------------------------------------------------
consensus_15114#0 TCGGTCACTCGGACACCACCAAGGGTCAAGGAAAGGGAGAATCAGCATGTCTCAGTTCTC 1289
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 ------------------------------------------------------------
consensus_15114#2 ------------------------------------------------------------
consensus_15114#0 AAGATGATTTGCAGAGCTCACTGGGATCCTCTGTGCCTGCCAGGATTTTCGTCAAAGAGA 1349
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 ------------------------------------------------------------
consensus_15114#2 ------------------------------------------------------------
consensus_15114#0 TGCAAGTGCTAAGTATATCATGGTTATCCCTCTAAGACCAGGTACAATAGAAGATTATTA 1409
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 ------------------------------------------------------------
consensus_15114#2 ------------------------------------------------------------
consensus_15114#0 GCCAGCTGCAAATATATTTTAATAAGATAAAAGACGAGAGAGAAGAGCAGCGGGCTACAG 1469
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 ------------------------------------------------------------
consensus_15114#2 ------------------------------------------------------------
consensus_15114#0 ATCTGTAACCAGCTGCAGGCTGCAGCACGGACTTAAAGACGCAATGTGTGCATGACAGGT 1529
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 ------------------------------------------------------------
consensus_15114#2 ------------------------------------------------------------
consensus_15114#0 GCGACCATATATAAATAGTATAGTAAGCAACTATTGTATTAATTGTCTATTAGATCGGCT 1589
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 ------------------------------------------------------------
consensus_15114#2 ------------------------------------------------------------
consensus_15114#0 ATAGATGAATTGGAGGTAGTAGTGGGCTATATTATTAAACTTGCTCTAAGAGCGAGTACA 1649
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 ------------------------------------------------------------
consensus_15114#2 ------------------------------------------------------------
consensus_15114#0 ATAGCAAGCTATAAGTTAAGCTGTAAGCATATGTGGAGAAGAGAAGAAAGAAGAGAGAAG 1709
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 ------------------------------------------------------------
consensus_15114#2 ------------------------------------------------------------
consensus_15114#0 GAAAGCGGGCTACAGATTTGTAGCCAGCTGCAGCAAAAAAAAAAAAAAAAAAAAAAAAAA 1769
consensus_15114#3 ------------------------------------------------------------
consensus_15114#1 -----------
consensus_15114#2 -----------
consensus_15114#0 AAAAAAAAAAA 1780
consensus_15114#3 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||