These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1377 fasta sequence [CTCACGCGGCTTCTCAAATTCGCACGCGACGGGATAAAAAGAAAAAAGAAGAGGAATAATTCGAAGGGAAGAGGAGGAGGAGGATCTCAATATCTCATCCTGCTGCCACTGCTCGACTCCTCCTACCCTCCCCCAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATT-GC-TT-GGAAGTCTGA-CCCAAAGGGATCT-CAGAAGAAGGAAATGGAAGAAGTGGAAGAGAAGCTTGAGTCAGGTCAAGGAAAATCAACCCTTCGCCGGTTCTTTGGAAGATTTTGTACACCGATCTTTTTGGAGGCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGCTTGCAACCCA-CAA-GAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCCACACTGTCTGCACATCACTTGCAGTCATAGGTGGGAGCATGTTGGCATCCAAGA-TTTCACAACGGACA-GTTGCAACAATCGGAGGTGTTCTCTTCTTGGGGTTCTCCGTGTCATCGTACTTCTATCCCCCACTATGATTAACAGCATTAACAGCTCCTTACTCTTTCTTGATACCCTTTGGTCACCCTGCTCCCTGTGTTGAGCAAATGAGTAGAGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTCGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTCTGATTTTTTGCTTGGTTGTACCTGACATCTAACTTATACAATATATATACACTATGTTGTTCAAAAATCCTTGCGTATAGAATATTATTCTGGTACCAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK073686 [CTCACGCGGCTTCTCAAATTCGCACGCGACGGGATAAAAAGAAAAAAGAAGAGGAATAATTCGAAGGGAAGAGGAGGAGGAGGATCTCAATATCTCATCCTGCTGCCACTGCTCGACTCCTCCTACCCTCCCCCAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATT GC TT GGAAGTCTGA CCCAAAGGGATCT CAGAAGAAGGAAATGGAAGAAGTGGAAGAGAAGCTTGAGTCAGGTCAAGGAAAATCAACCCTTCGCCGGTTCTTTGGAAGATTTTGTACACCGATCTTTTTGGAGGCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGCTTGCAACCCA CAA GAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCCACACTGTCTGCACATCACTTGCAGTCATAGGTGGGAGCATGTTGGCATCCAAGA TTTCACAACGGACA GTTGCAACAATCGGAGGTGTTCTCTTCTTGGGGTTCTCCGTGTCATCGTACTTCTATCCCCCACTATGATTAACAGCATTAACAGCTCCTTACTCTTTCTTGATACCCTTTGGTCACCCTGCTCCCTGTGTTGAGCAAATGAGTAGAGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTCGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTCTGATTTTTTGCTTGGTTGTACCTGACATCTAACTTATACAATATATATAC ] [+] EMBL CF327969 [ GAGGAGGATCTCAATATCTCATCCTGCTGCCACTGCTCGACTCCTCCTACCCTCCCCCAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCG GCAGGGGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATT GCTTT GGAAGTCTGA CCCAAAGGGATCT CAGAAGAAGGAAATGG ] [+] EMBL CF315256 [ ATCCTGCTGCCACTGCTCGACTCCTCCTACCCTCCCCCAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGTAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGTTTTGTACTTGTTCTTTGGACTACGT ] [+] EMBL AK104618 [ CAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATT GC TT GGAAGTCTGA CCCAAAGGGATCT CAGAAGAAGGAAATGGAAGAAGTGGAAGAGAAGCTTGAGTCAGGTCAAGGAAAATCAACCCTTCGCCGGTTCTTTGGAAGATTTTGTACACCGATCTTTTTGGAGGCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGCTTGCAACCCA CAA GAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCCACACTGTCTGCACATCACTTGCAGTCATAGGTGGGAGCATGTTGGCATCCAAGA TTTCACAACGGACA GTTGCAACAATCGGAGGTGTTCTCTTCTTGGGGTTCTCCGTGTCATCGTACTTCTATCCCCCACTATGATTAACAGCATTAACAGCTCCTTACTCTTTCTTGATACCCTTTGGTCACCCTGCTCCCTGTGTTGAGCAAATGAGTAGAGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTCGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGC ] [+] EMBL AK061749 [ CAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGGTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATT GC TT GGAAGTCTGA CCCAAAGGGATCT CAGAAGAAGGAAATGGAAGAAGTGGAAGAGAAGCTTGAGTCAGGTCAAGGAAAATCAACCCTTCGCCGGTTCTTTGGAAGATTTTGTACACCGATCTTTTTGGAGGCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGCTTGCAACCCA CAA GAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCCACACTGTCTGCACATCACTTGCAGTCATAGGTGGGAGCATGTTGGCATCCAAGA TTTCACAACGGACA GTTGCAACAATCGGAGGTGTTCTCTTCTTGGGGTTCTCCGTGTCATCGTACTTCTATCCCCCACTATGATTAACAGCATTAACAGCTCCTTACTCTTTCTTGATACCCTTTGGTCACCCTGCTCCCTGTGTTGAGCAAATGAGTAGAGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTCGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGC ] [+] EMBL AU095755 [ CTTTGGGANACGTTTGTTATACATTGGC TTGGGAAGTCTGACCCCAAAGGGATCT CAGAAGAAGGAAATGNAAGAAGTGGAAGAGAAGCTTGAGTCAGGTCAAGGAAAATCAACCCTTCGCCGGTTCTTTGGAAGATTTTGTACACCGATCTTTTTGGAGGCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGCTTGCAACCCA CAA GAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCCACACTGTCTGCACATCACTTGCAGTCATAGGTGGGAGCATGTTGGCATCCAAGA TTTCACAACGGACA GTTGCAACAATCGGAGGTGTTCTCTTCTTGGGGTTCTCCGTGTCATCGTACTTCTATCCCCCACTATGATTAACAGCATTAACAGCTCCTTACTCTTTCTTGATACCCTTTGGTCACCCTGCTCCCTNTGTTGAGCAAATGAGTAGAGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTCGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTCTGATTTTTTGCTTGGTTGTACCTGACATCTAACTTATACAATATATATACACTATGTTGTTCAAAAAaaaa ] [+] EMBL AU093015 [ TCTGA CCCAAAGGGATCTCCAGAAGAAGGAAATGGAAGAAGTGGAAGAGAAGCTTGAGTCAGGTCAAGGAAAATCAACCCTTCGCCGGTTCTTTGGAAGATTTTGTACACCGATCTTTTTGGAGGCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGCTTGCAACCCA CAA GAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCCACACTGTCTGCACATCACTTGCAGTCATAGGTGGGAGCATGTTGGCATCCAAGA TTTCACAACGGACA GTTGCAACAATCGGAGGTGTTCTCTTCTTGGGGTTCTCCGTGTCATCGTACTTCTATCCCCCACTATGATTAACAGCATTAACAGCTCCTTACTCTTTCTTGATACCCTTTGGTCACCCTGCTCCCTGTGTTGAGCAAATGAGTAGAGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTCGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTCTGATTTTTTGCTTGGTTGTACCTGACATCTAACTTATACAATATATATACACTATGTTGTTCAAGGTTCCTTGCGTATAGAATATTATTCTGGTACCAAAAAAA ] [+] EMBL BI809696 [ GCGCTTGCAACCCACCAAGGAATCCAATCGGAGTACCAGTTGGAGCATCATT GGCCACACTGTCTGCACATCACTTGCAGTCATAGGTGGGAGCATGTTGGCATCCAAGA TTTCACAACGGACA GTTGCAACAATCGGAGGTGTTCTCTTCTTGGGGTTCTCCGTGTCATCGTACTTCTATCCCCCACTATGATTAACAGCATTAACAGCTCCTTACTCTTTCTTGATACCCTTTGGTCACCCTGCTCCCTGTGTTGAGCAAATGAGTAGAGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTCGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTCTGATTTTTTGCTTGGTTGTACCTGACATCTAACTTACACAATATATATACACTATGTTGTTCAAAAA ] [-] EMBL CF321483 [ TCGGAGTAGCAGTTGGAGCATCATTGGGCCACACTGTCTGCACATCACTTGCAGTCATAGGTGGGAGCATGTTGGCATCCAAGA TTTCACAACGGACA GTTGCAACAATCGGAGGTGTTCTCTTCTTGGGGTTCTCCGTGTCATCGTACTTCTATCCCCCACTATGATTAACAGCATTAACAGCTCCTTACTCTTTCTTGATACCCTTTGGTCACCCTGCTCCCTGTGTTGAGCAAATGAGTAGAGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTCGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTCTGATTTTTTGCTTGGTTGTACCTGACATCTAACTTATACAATATATATACACTATGTTGTTCAAAAA ] [-] EMBL CF315257 [ TCGGAGTAGCAGTTGGAGCATCATTGGGCCACACTGTCTGCACATCACTTGCAGTCATAGGTGGGAGCATGTTGGCATCCAAGA TTTCACAACGGACA GTTGCAACAATCGGAGGTGTTCTCTTCTTGGGGTTCTCCGTGTCATCGTACTTCTATCCCCCACTATGATTAACAGCATTAACAGCTCCTTACTCTTTCTTGATACCCTTTGGTCACCCTGCTCCCTGTGTTGAGCAAATGAGTAGAGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTCGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTCTGATTTTTTGCTTGGTTGTACCTGACATCTAACTTATACAATATATATACACTATG TGTTCAAA ] [-] EMBL CF327970 [ GGAGTAGCAGTTGGAGCATCATTGGGCCACACTGTCTGCACATCACTTGCAGTCATAGGTGGGAGCATGTTGGCATCCAAGA TTTCACAACGGACA GTTGCAACAATCGGAGGTGTTCTCTTCTTGGGGTTCTCCGTGTCATCGTACTTCTATCCCCCACTATGATTAACAGCATTAACAGCTCCTTACTCTTTCTTGATACCCTTTGGTCACCCTGCTCCCTGTGTTGAGCAAATGAGTAGAGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTCGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTCTGATTTTTTGCTTGGTTGTACCTGACATCTAACTTATACAATATATATACACTATGTTGTTCAAAAAaaaa ] [+] EMBL BI800034 [ tGGAGCATTTTGGCATCCCAGATTTTCACAACGGACATGTTGCAACAATCGGAGGTGTTCTCTTCTTGGGGTTCTCCGTGTCATCGTACTTCTATCCCCCACTATGATTAACAGCATTAACAGCTCCTTACTCTTGCTTGATACCCTTTGGTCACCCTGCTCCCTGTGTTGAGCAAATGAGTAGAGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTTGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTCTGATTTTTTGCTTGGTTGTACCTGGCATCTAACTTATACAATATATATACACTATGTTGTTCAAGGTTCCTTGCGTATAGAATATTATTCTGGTACCCAAAAAAAAAA ] [+] EMBL CF333557 [ GGGCACCTCTACGCTACGATTCGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTCTGATTTTTTGCTTGGTTGTACCTGACATCTAACTTATACAATATATATACACTATGTTGTTCAAGGTTCCTTGCGTATAGAATATTATTCTGGTACCATTTTCTAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 508 fasta sequence [CACTGACATGGATGAGGAGTAGAAAAAAAATGAGGAATAATTCGAAGGGAAGAGGAGGAGGAGGATCTCAATATCTCATCCTGCTGCCACTGCTCGACTCCTCCTACCCTCCCCCAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTC-AGCGAGATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGGTACTA] [+] EMBL CF305396 [CACTGACATGGATGAGGAGTAGAAAAAAAATGAGGAATAATTCGAAGGGAAGAGGAGGAGGAGGATCTCAATATCTCATCCTGCTGCCACTGCTCGACTCCTCCTACCCTCCCCCAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTC AGCGAGATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGGTACTA] [+] EMBL OSS10808A [ AAGGGAAGAGGAGGAGGAGGATCTCAATATCTCATCCTGCTGCCACTGCTCGACTCCTCCTACCCTCCCCCAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTNCGNCANCGTGGCGGTCGCCGAGGACGG GAATCGACGGGGGGATCGAAGGTCTCGCTNGGGCGCCGTGCAGGGGGGTTCTTGCACGGGCTNAAGAAGGAAGCAGTTGTNGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTTTTCGATGCGCTCTTCGCGAGTCTCTCGATG ] [+] EMBL BE040531 [ CAATATCTCATCCTGCTGCCACTGCTCGACTCCTCCTACCCTCCCCCAAATCCGCGAGCCCCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGGGTTCTTGCACGGGCTGAAGAAGGAA ] [+] EMBL AU030831 [ AATATCTCATCCTGCTGCCACNGCTCGACTCCTCCTACCCTCCCCCAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCNCCGCCACCGTGGCGGTCGCCGAGGACGG GAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAG NCATNGGGTGGCCCTCGATGAGGTCGGCCCCGG ] [+] EMBL C28536 [ tcntncatATATCTCATCCTGCTGCCACTGCTCGANTCCTCCTTATCTCCCCCAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTTGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGGGAGTCTCTCGATGATCTTAGTCAACCNAGATTGGAGATG ] consensusID : consensus_15124#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [TTTCTTGATNCCCTTTGGTCNCCCTGCTCCCTGTNTTGAGCAAATGAGTAGNGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTCGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTCTGATTTTTTGCTTGGTTGTNCCTGACATCTAANTTATACAATATATATACACTATGTTGTTCANGGTTCCTTGNGTAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030832 [TTTCTTGATNCCCTTTGGTCNCCCTGCTCCCTGTNTTGAGCAAATGAGTAGNGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTCGCAATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTCTGATTTTTTGCTTGGTTGTNCCTGACATCTAANTTATACAATATATATACACTATGTTGTTCANGGTTCCTTGNGTAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15124#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence [AAAGGACGAGACAAGGGGGATGATAAAATCATGTTTGATTTTTGCTTGGTTGTACCTGGCATCTAACTTATACAATATATATACACTATGTTGTTCAAGGTTCCTTGCGTATAGAATATTATTCTGGTACCATTTTCTAAAAAAAAAAAAAAA] [-] EMBL CA760452 [AAAGGACGAGACAAGGGGGATGATAAAATCATGTTTGATTTTTGCTTGGTTGTACCTGGCATCTAACTTATACAATATATATACACTATGTTGTTCAAGGTTCCTTGCGTATAGAATATTATTCTGGTACCATTTTCTAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 CTCACGCGGCTTCTCAAATTCGCACGCGACGGGATAAAAAGAAAAAAGAAGAGGAATAAT 60 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 TCGAAGGGAAGAGGAGGAGGAGGATCTCAATATCTCATCCTGCTGCCACTGCTCGACTCC 120 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 TCCTACCCTCCCCCAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATC 180 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 CGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGGCGGTCG 240 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 CCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGGGT 300 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 TCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATG 360 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 AGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCG 420 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 AGATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAA 480 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 TCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGGTACTATCAACTGGACTTG 540 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 GTAGGATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGTTTTGT 600 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 ACTTGTTCTTTGGACTACGTTTGTTATACATTGCTTGGAAGTCTGACCCAAAGGGATCTC 660 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 AGAAGAAGGAAATGGAAGAAGTGGAAGAGAAGCTTGAGTCAGGTCAAGGAAAATCAACCC 720 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 TTCGCCGGTTCTTTGGAAGATTTTGTACACCGATCTTTTTGGAGGCTTTTATCTTAACCT 780 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 TCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGCTTGCAACCCACAAGA 840 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 ATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCCACACTGTCTGCACATCACTTGCAG 900 consensus_15124#1 ------------------------------------------------------------ consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 TCATAGGTGGGAGCATGTTGGCATCCAAGATTTCACAACGGACAGTTGCAACAATCGGAG 960 consensus_15124#1 --------------CACTGACATGGATGAGGAGTAGAAAAAAAATGAGGAATAATTCGAA 46 consensus_15124#2 ------------------------------------------------------------ consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 GTGTTCTCTTCTTGGGGTTCTCCGTGTCATCGTACTTCTATCCCCCACTATGATTAACAG 1020 consensus_15124#1 GGGAAGAGGAGGAGGAGGATCTCAATATCTCATCCTGCTGCCACTGCTCGACTCCTCCTA 106 consensus_15124#2 -------------------TTTCTTGATNCCCTTTGGTCNCCCTGCTCCCTGTNTTGAGC 41 consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 CATTAACAGCTCCTTACTCTTTCTTGATACCCTTTGGTCACCCTGCTCCCTGTGTTGAGC 1080 consensus_15124#1 CCCTCCCCCAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAAC 166 consensus_15124#2 AAATGAGTAGNGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGAT-----TCGCA 96 consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 AAATGAGTAGAGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGAT-----TCGCA 1135 consensus_15124#1 CCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGGCGGTCGCCGAG 226 consensus_15124#2 ATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGA----CCATGCTA------CTTCA 146 consensus_15124#3 ------------------------------------------------------------ consensus_15124#0 ATTCATGTATAGCCCTTGCAAATGAAATTGTTCCTGA----CCATGCTA------CTTCA 1185 consensus_15124#1 GACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGGGTTCTTG 286 consensus_15124#2 CTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTC-TGATTTTTTGCTTGGT 205 consensus_15124#3 --------AAAGGACGAGACAAGGGGGATGATAAAATCATGTT-TGATTTTT-GCTTGGT 50 consensus_15124#0 CTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATCATGTC-TGATTTTTTGCTTGGT 1244 consensus_15124#1 CACGGGCTGAAGAAGGAAGCAGTGGTGGAGG-GAGACCATGGGGTGGCCCTCGATGAGGT 345 * ** * * * * * **** ** * *** consensus_15124#2 TGTNCCTGACATCTAANTTATACAATATATATACACTATGTTGTTCANGGTTCCTTGNGT 265 consensus_15124#3 TGTACCTGGCATCTAACTTATACAATATATATACACTATGTTGTTCAAGGTTCCTTGCGT 110 consensus_15124#0 TGTACCTGACATCTAACTTATACAATATATATACACTATGTTGTTCAAAAATCCTTGCGT 1304 consensus_15124#1 CGGCCCCGGGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGAT 405 * ** * * * * * * * ** ** * consensus_15124#2 AAAAAAAAAAAA----------------AAAAAAAAAAAAAAA----------------- 292 consensus_15124#3 ATAGAATATTATTCTGGTACCATTTTCTAAAAAAAAAAAAAAA----------------- 153 consensus_15124#0 ATAGAATATTATTCTGGTACCAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAA 1364 consensus_15124#1 TGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGT 465 * * ** * consensus_15124#2 ------------------------------------------- consensus_15124#3 ------------------------------------------- consensus_15124#0 AAAAAAAAAAAAA------------------------------ 1377 consensus_15124#1 TCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGGTACTA 508 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||