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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 990 fasta sequence
[GCAGCAGAGCTCAGCGTTTGGAGCGAGATGATGAGCAGCAGCAGCAGCTTGGTGTCCGCCATTTCTGCGTCACCGTCTGCCACTGCAAAAGCTCGCCTTCGTCATGACGATGCAGCAACAGCAACAGGAGCATGGCGGGGCCCGGGCCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC-ACAACTTTGAGCCGGAGATCTACAT-GA-TGGAGAGATCGGCTCG-CGACAAGCTCATCGCCGACTACAACA-CCATGGACATCTGGGACTTCAACGAGAAGTACG-GCGAGCT-CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA-AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT-AAAGAACTTTGAGATGA-AATGATGTGTGTATGGATCATC-TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG-TGAATGACATCACTAATTCAATAGATA-TATATAGTAGTATAATGGAATAACTTTGGCA]
[+] EMBL AK105788 [GCAGCAGAGCTCAGCGTTTGGAGCGAGATGATGAGCAGCAGCAGCAGCTTGGTGTCCGCCATTTCTGCGTCACCGTCTGCCACTGCAAAAGCTCGCCTTCGTCATGACGATGCAGCAACAGCAACAGGAGCATGGCGGGGCCCGGGCCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG TGAATGACATCACTAA ]
[+] EMBL AK067717 [ CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG TGAATGACATCACTAATTCAATAGATA TATATAGTAGTATAATGGAATAACTTTGGC ]
[+] EMBL AK059975 [ CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG TGAATGACATCACTAATTCAATAGATA TATATAGT ]
[+] EMBL AK059880 [ CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAA ]
[+] EMBL CF326628 [ CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GANTGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTC ]
[+] EMBL CF326272 [ CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCT ]
[-] EMBL CF326371 [ CACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAG ]
[-] EMBL CF333184 [ GATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGCTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG TGAATGAaaaaaa ]
[-] EMBL CF335249 [ GCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG TGAATGAaaaaa ]
[+] EMBL BM421641 [ GCCACAACAACTTTGA CCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATC CCGACTAC ACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCC AAGAAAAGCAGGGTGGC AAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGNCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAAGTAC AAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCC ATGTAATGGAGAAAATCCTG TGAATGACATCACTAATTC ATAGATACTATATAGTAGTATAATGGAATAAaaaaaaaa]
[+] EMBL BQ906467 [ ACAACTTTGAGCCGGAGATCTACATGGA TGGAGAGATCGGCTCGCCGACAAGCTCATCGCCGACTACAACACCCATGGACATCTGGGACTTCAACGAGAAGTACGCGCGAGCTNNTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTNTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCATAAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCCAAATNTAAGNACTTTGAGATGACAATGATGTGTGTATGGATCATCATCATCTACTGTAAGGCCTGCCNTCTATGTCTCTGACAGTCTCAACTCTGAAGTTTTCAGCCAAGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTGCTGAATGACATCACTAATTCAATAGATAaaa ]
[+] EMBL AK060605 [ CTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAA ]
[-] EMBL AA754399 [ TGGTATTCAGAAAT GGGGGMCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAAGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG TGAATGACATCACTAATTCAATAGATA TATATAGTAGTATKAT GNATAAC ]
consensusID : consensus_15138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 895 fasta sequence
[CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGTCTGTCCTCCTCGCCGTCGCCGGCCACCGTGTTGAGAATTTCATTATTTTTCTCTATTCCAAGCAGTTTCCATGGTTTCTTTGATTCTTTCTTCAGTGATTGCTGCTGCTGTGCTGTGTTGTCTGAAGAAATGGTTTTGACACTGAAAAGAATCTGCTTTGCAGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCACACAACTTTGAGCCGGAGATCTACATGATGGAGAGATCGGCTCGCGACAAGCTCATCGCCGACTACAACACCATGGACATCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGACCCACTCCAAAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAATAAAGAACTTTGAGATGAAATGATGTGTGTATGGATCATCTCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGAC]
[+] EMBL CB665101 [CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGTCTGTCCTCCTCGCCGTCGCCGGCCACCGTGTTGAGAATTTCATTATTTTTCTCTATTCCAAGCAGTTTCCATGGTTTCTTTGATTCTTTCTTCAGTGATTGCTGCTGCTGTGCTGTGTTGTCTGAAGAAATGGTTTTGACACTGAAAAGAATCTGCTTTGCAGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCACACAACTTTGAGCCGGAGATCTACATGATGGAGAGATCGGCTCGCGACAAGCTCATCGCCGACTACAACACCATGGACATC ]
[-] EMBL CB665102 [ TTCATTATTTTTCTCTATTCCAAGCAGTTTCCATGGTTTCTTTGATTCTTTCTTCAGTGATTGCTGCTGCTGTGCTGTGTTGTCTGAAGAAATGGTTTTGACACTGAAAAGAATCTGCTTTGCAGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCACACAACTTTGAGCCGGAGATCTACATGATGGAGAGATCGGCTCGCGACAAGCTCATCGCCGACTACAACACCATGGACATCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGACCCACTCCAAAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAATAAAGAACTTTGAGATGAAATGATGTGTGTATGGATCATCTCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGAC]
consensusID : consensus_15138#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 701 fasta sequence
[AGCAGCAGAGCTCAGCGTTTGGAGCGAGATGATGAGCAGCAGCAGCAGCTTGGTGTCCGCCATTTCTGCGTCACCGTCTGCCACTGCAAAAGCTCGCCTTCGTCATGACGATGCAGCAACAGCAACAGGAGCAGCAGCAGCAGCAGCAGTAGCAGCGAGGCAGCTAAAGACGGAGCATGGCGGCTGCTGCTGCTGCCGGAGCAGAGGCGGGCGGTGGGGCGAGGGCGGGGCCCGGGCCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGAC-TTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCTTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGCTATCGAGATGGACAAACCGGACAAGCCACACAACTTTGAGCCGGAGATCTACATGATGGANAGATCGGCTCGCGACAAGCTCATCGCCGACTACAACACCATGGACATCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTCACGCAGCCCGG]
[+] EMBL CF335248 [AGCAGCAGAGCTCAGCGTTTGGAGCGAGATGATGAGCAGCAGCAGCAGCTTGGTGTCCGCCATTTCTGCGTCACCGTCTGCCACTGCAAAAGCTCGCCTTCGTCATGACGATGCAGCAACAGCAACAGGAGCAGCAGCAGCAGCAGCAGTAGCAGCGAGGCAGCTAAAGACGGAGCATGGCGGCTGCTGCTGCTGCCGGAG ]
[+] EMBL CF333183 [ TTCTGCGTCACCGTCTGCCACTGCAAAAGCTCGCCTTCGTCATGACGATGCAGCAACAGCAACAGGAGCAGCAGCAGCAGCAGCAGTAGCAGCGAGGCAGCTAAAGACGGAGCATGGCGGCTGCTGCTGCTGCCGGAGCAGAGGCGGGCGGTGGGGCGAGGGCGGGGCCCGGGCCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGAC TTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCTTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGCTATCGAGATGGACAAACCGGACAAGCCACACAACTTTGAGCCGGAGATCTACATGATGGANAGATCGGCTCGCGACAAGCTCATCGCCGACTACAACACCATGGACATCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTCAC ]
[+] EMBL OSS11540A [ CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCACCCGGGACGACTTTCGAGTATGGAGTGTATTATGGTCANCACACATATAATGAAACCCAAGATAA ]
[-] EMBL CF326646 [ CACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGAC TTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCC GGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTATGAGTTATCGAGATGGACAAACCGGACAAGCCACACAACTTTGAGCCGGAGATCTACATGATGGAGAGATCGGCTCGCGACAAGCTCATCGCCGACTACAACACCATGGACATCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTAAAGCAGCCCGG]
consensusID : consensus_15138#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[GCCTTAATATGGGGCAAGAANNGCTTGCGTGNTGCGGTTTTCCGTTANTTCCGATTGGGNCCCNTNNCCCCAGACGCATGCGCCCAGCATCNAATCTTTTTNACCCCGGTTCAGTACCAGTGATGGAGGAGATCTCGNTNTTCGCAGACCAAGGNCTAATTCCCCGTANTACAACACCCTATGGACATCTGGGACTTCACACGAGAAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAAAGAGATGAGATTGTGGAAATCGTCTTAAGAATATGGGTAATTCAAGATAATGGGGGGTCAACATTTGTTAGATCGCAGTCTNCTAGAACCTAGTTCTAGAATATATCTAGATNCCNACTCCATATAGAATATAGCCAGGGTGCGCATAAGCTGCATAGATGGAGTCTCTTCAAAATATAAGAACTTTGGAGATGGAAATGATGTGTGTATGGATCATCTCATCTACTGTAAGGCCTGCTTTCATATGTCTCTGACACGTCTTCAACTCTGAAGTTCTTCAGCCAAGNACAAAAGGAGACTGAAAATTCTGGTCATGTGTATTTTGTTTTCCCCCCCAAATGTAATGGAGAAAATCCCTGGTGAATGACATCACTAATTCAATAGATATATATAGTAGTATAATNGGAATAACTTGGNCATCACCCTCC]
[+] EMBL BQ907141 [GCCTTAATATGGGGCAAGAANNGCTTGCGTGNTGCGGTTTTCCGTTANTTCCGATTGGGNCCCNTNNCCCCAGACGCATGCGCCCAGCATCNAATCTTTTTNACCCCGGTTCAGTACCAGTGATGGAGGAGATCTCGNTNTTCGCAGACCAAGGNCTAATTCCCCGTANTACAACACCCTATGGACATCTGGGACTTCACACGAGAAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAAAGAGATGAGATTGTGGAAATCGTCTTAAGAATATGGGTAATTCAAGATAATGGGGGGTCAACATTTGTTAGATCGCAGTCTNCTAGAACCTAGTTCTAGAATATATCTAGATNCCNACTCCATATAGAATATAGCCAGGGTGCGCATAAGCTGCATAGATGGAGTCTCTTCAAAATATAAGAACTTTGGAGATGGAAATGATGTGTGTATGGATCATCTCATCTACTGTAAGGCCTGCTTTCATATGTCTCTGACACGTCTTCAACTCTGAAGTTCTTCAGCCAAGNACAAAAGGAGACTGAAAATTCTGGTCATGTGTATTTTGTTTTCCCCCCCAAATGTAATGGAGAAAATCCCTGGTGAATGACATCACTAATTCAATAGATATATATAGTAGTATAATNGGAATAACTTGGNCATCACCCTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15138#1 CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAAC 60
consensus_15138#3 ------------------------------------------------------------
consensus_15138#0 --------------------GCAGCAGAGCTCAGCGTTTGGAGCGAGATGATGAGCAGCA 40
consensus_15138#2 ------------------------------------------------------------
consensus_15138#1 GGCGTCAGCCCGGTCTGTCCTCCTCGCCGTCGCCGGCCACCGTGTTGAGAATTT-CATTA 119
consensus_15138#3 ------------------------------------------------------------
consensus_15138#0 GCAGCAGCTTGGTGTCCGCCATTTCTGCGTCACCGTCTGCCACTGCAAAAGCTCGCCTTC 100
consensus_15138#2 ------------------------------------------------------------
consensus_15138#1 TTTTTCTCTATTCCAAGCAGTTTCCATGGTTTCTTTGATTCTTTCTTCAGTGATTGCTGC 179
consensus_15138#3 ------------------------------------------------------------
consensus_15138#0 GTCATGACGATGCAGCAACAGCAACAGGAGCATGGCGGGGCCCGGGCCACTGACGGAGAT 160
consensus_15138#2 ------------------------------------------------------------
consensus_15138#1 TGCTGTGCTGTGTTGTCTGAAGAAATGGTTTTGACACTGAAAAGAATCTGCTTTGCAGGA 239
consensus_15138#3 ------------------------------------------------------------
consensus_15138#0 CGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGA 220
consensus_15138#2 ------------------------------------------------------------
consensus_15138#1 CGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAA 299
consensus_15138#3 ------------------------------------------------------------
consensus_15138#0 CGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAA 280
consensus_15138#2 ------------------------------------------------------------
consensus_15138#1 GGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCA 359
consensus_15138#3 ------------------------------------------------------------
consensus_15138#0 GGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCA 340
consensus_15138#2 ------------------------------------------------------------
consensus_15138#1 AGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCC 419
consensus_15138#3 ---------------GCCTTAATATGGGGCAAGAANNGCTTGCGTGN--TGCGGTTTTCC 43
consensus_15138#0 AGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCC 400
consensus_15138#2 ---------------------------AGCAGCAGAGCTCAGCGTTTGGAGCGAGATGAT 33
*** ** * * *
consensus_15138#1 GGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGAT 479
consensus_15138#3 GT-----TANTTCCGATTGGGNCCCNTNNCCCCAGACG-CATGCGCCCAGCATCNAATCT 97
consensus_15138#0 GGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGAT 460
consensus_15138#2 GAGCAGCAGCAGCAGCTTGGTGTCCGCCATTTCTG-CGTCAC-CGTCTGCCACTGCAAAA 91
* * * * * * ** * *
consensus_15138#1 GGACAAACCGGACAAGCC-ACACAACTTTGA-GCCGGAGATCTACATGATGGAGAGATCG 537
consensus_15138#3 TTTTNACCCCGGTTCAGT-AC-CAGTGATGG-A--GGAGATCTCGNTNTTCGCA-----G 147
consensus_15138#0 GGACAAACCGGACAAGCC-ACACAACTTTGA-GCCGGAGATCTACATGATGGAGAGATCG 518
consensus_15138#2 GCTCGCCTTCGTCATGACGATGCAGCAACAGCAACAGGAGCAGCAGCAGCAGCAGCAGTA 151
* * ** * *
consensus_15138#1 GCTCGCGACAAGCTCATCGCCGACTACAACACC--ATGGACATCTGGGACTTCA-ACGAG 594
consensus_15138#3 ACCAAGGNCTAATTCCCCGT--ANTACAACACCCTATGGACATCTGGGACTTCACACGAG 205
consensus_15138#0 GCTCGCGACAAGCTCATCGCCGACTACAACACC--ATGGACATCTGGGACTTCA-ACGAG 575
consensus_15138#2 GCAGCGAGGCAGCTAAAGACGGAGCATGGCGGCTGCTGCTGCTGCCGGAGCAGAGGCGGG 211
* * * * * * * ** * *** * ** *
consensus_15138#1 AAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAA---GAGATGAGATTGTG-AAATC 650
consensus_15138#3 AAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAAA--GAGATGAGATTGTGGAAATC 263
consensus_15138#0 AAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAA---GAGATGAGATTGTG-AAATC 631
consensus_15138#2 CGGTGGGGCGAGGGCGGGGCCCGGGCCACTGACGGAGATCGAGCCCGACCTGAA-CGAGG 270
** ****** * *** * ** *** ** *** ** *
consensus_15138#1 GTCTTAG--ATATGGT--ATTCAGA--AATGGGGGGTCA-CATTTGTTAGAT-GCAG-CT 701
consensus_15138#3 GTCTTAAGAATATGGGTAATTCAAGATAATGGGGGGTCAACATTTGTTAGATCGCAGTCT 323
consensus_15138#0 GTCTTAG--ATATGGT--ATTCAGA--AATGGGGGGTCA-CATTTGTTAGAT-GCAG-CT 682
consensus_15138#2 ACCCCATTGATAAGTGGCGCACCAA-CGGCGTCAGCCCG-GACGACTTCGAGTATGGAGT 328
* * *** * * * * * * ** ** * *
consensus_15138#1 GCAGAAAC--AGTTC-AGAAAATC-----AGACCCACTCCAAAGAAAA------GCAGGG 747
consensus_15138#3 NCTAGAACCTAGTTCTAGAATATATCTAGATNCCNACTCCATATAGAATATA-GCCAGGG 382
consensus_15138#0 GCAGAAAC--AGTTC-AGAAAATC-----AGAACCACTCCAAAGAAAA------GCAGGG 728
consensus_15138#2 GTATGA---TGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGA 385
* ** * ** * * * * * ***
consensus_15138#1 TG-GCA-AAGCTGCA---AGATG---AGTCTCTTCAAAATA-AAGAACTTTG-AGATG-A 796
consensus_15138#3 TGCGCATAAGCTGCAT--AGATGG--AGTCTCTTCAAAATATAAGAACTTTGGAGATGGA 438
consensus_15138#0 TG-GCA-AAGCTGCA---AGATG---AGTCTCTTCAAAATA-AAGAACTTTG-AGATG-A 777
consensus_15138#2 TGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCTTG 445
** ** * * *** * * *** *** * * **
consensus_15138#1 AATGATGTGTGTATGGATCATCT----CATCTACTGTAAGG--CCTGCTTTC-TATGTCT 849
consensus_15138#3 AATGATGTGTGTATGGATCATCT----CATCTACTGTAAGG--CCTGCTTTCATATGTCT 492
consensus_15138#0 AATGATGTGTGTATGGATCATCT----CATCTACTGTAAGG--CCTGCTTTC-TATGTCT 830
consensus_15138#2 GTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGGAGTACCTCT 505
** * * ****** *** ** ** * ** * ** ***
consensus_15138#1 CTGACA-GTCT-CAAC-TCTGAAGTTCT-CAGCCAGGTACAAAAGGAGAC---------- 895
consensus_15138#3 CTGACACGTCTTCAAC-TCTGAAGTTCTTCAGCCAAGNACAAAAGGAGACTGAAAATTCT 551
consensus_15138#0 CTGACA-GTCT-CAAC-TCTGAAGTTCT-CAGCCAGGTACAAAAGGAGACTGAAAATTCT 886
consensus_15138#2 ACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGCTATCGAGATGGACAAACCGGACA 565
* * ** * * ** * * * ***
consensus_15138#1 ------------------------------------------------------------
consensus_15138#3 GGTCATGTGTATTTTGTTTTCCCCCCCAAATGTAATGGAGAAAATCCCTGGTGAATGACA 611
consensus_15138#0 G-TCATGTGTATTTTGTTTTCCCCCC--AATGTAATGGAGAAAATCCT--GTGAATGACA 941
consensus_15138#2 AGCCACACAACTTTGAGCCGGAGATCTACATGATGGANAGATCGGCTCGCGACAAGCTCA 625
consensus_15138#1 ------------------------------------------------------------
consensus_15138#3 TCACTAATT----CAATAGATATATATAGTAGTATAATNGGAATAACTTGGNCATCACCC 667
consensus_15138#0 TCACTAATT----CAATAGATATATATAGTAGTATAATGG-AATAACTTTGGCA------ 990
consensus_15138#2 TCGCCGACTACAACACCATGGACATCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGG 685
consensus_15138#1 ----------------
consensus_15138#3 TCC------------- 670
consensus_15138#0 ----------------
consensus_15138#2 ACTTCACGCAGCCCGG 701
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||