These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 833 fasta sequence [CGCCTCTATTTGCGTTGCGAGGCGACGACGTGCCAACCACGAACAGAGGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA-G-GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC-TGGCCAGAGCCCGA-CCGCG-TGGGGAGGCAGGAG-CT-C-GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA-TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC-GCATCTTCTACTACCTCGTCCAGGATCTGAAAT-GT-TTCGTGTTTTCACTCATCAATCTCCACTTC-AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG-GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT-GTTGTTGGA-TTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCTTTTTCTACTCCAAGGAGTCTCTCCCTGAAGTAGCA] [+] EMBL AF338343 [CGCCTCTATTTGCGTTGCGAGGCGACGACGTGCCAACCACGAACAGAGGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGATTTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCTTT ] [+] EMBL OSS2673A [ GCGTTGCGAGGCGACGACGTGCCAACCACGAACAGAGGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGNG CGCCGGCGA GNGACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTNCGAGATTATGAAGGAGGACGACAACAACTTNGCCAGAGCCCGA CCGCGTTGGGGAGGCAGGA ] [+] EMBL CB646953 [ CGACCCGCCAACCACGAACAGAGGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGA TTGTGCAAGCTT ] [-] EMBL CB646954 [ AGAGGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTTTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGA TTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCTTTT ] [+] EMBL AK121477 [ AGGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCCCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGA TTGTGCAAGCTTTGGGTG ] [+] EMBL AK063847 [ GGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGA TTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCTTTTTCTACTCCAAGGAGTCTCTCCCTGAAGTAGCA] [+] EMBL OSC04001 [ GGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGAG CGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTNCG GA GCCCGGAGGATCATCCAGGAGTNCGAGATTATGAAG ] [+] EMBL AU070267 [ TCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCCGGCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTCAAAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTANCCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATTGGTTGTTGGA TTGNGCAAG TTTG ] [+] EMBL C74220 [ TCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGANG GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAANGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTTCGAGATTATGAAGGAGGACGACAACAACTTGGCCAGAGCNCGA CGCG TTGGGAGGCAGGAG CTCC GAGATTNTTATGGGCAACGAGCACATNTTCTTTAACAACTCCAAAATTTGGCTCCTTCGTNGAgttt ] [+] EMBL CA764297 [ GCACGAGTCCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTTGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGA TTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCT ] [+] EMBL AU091350 [ CTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGA TTGTGCAAaaaaaa ] [+] EMBL AU097162 [ t TGGCCAGANCCCGACCCGCGTTGGGGAGTCAGGAGNCTNCTGAGATTGTTATGGGCAACGAGCATATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAATCGTCTTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTGNGTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATTCGTTGTTGGA TTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCTTTTTCTAaa ] consensusID : consensus_15139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 704 fasta sequence [AATGGCGACGGTGGCCGGCGACGATGGCGGCGGCGGCGGTGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTGGAGTTCGA-GTTCCGG-CCCGACGGGAAGCTCCGGTACGCCAACAACT-CCAACTACAAGAAGGACACCATGAT-CCGCAAGGAGGTGTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCACCAGGATCATCCACGAATCCGAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGAC-CGCGTGGGAAGGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTTAAGTGC-TTCGTGTTTTCACTCATCAATCTCCACTTCAAGATC-AAGCCCA-TTCAATCTTGAGCTCCTTTCAGTTTCTTAATTGTATTATGGTCAGTGTT-AGAGAGCTCAGTACAATGTATGATCTGATCCAGTGAGTTAA-CCCTGATGACTTTTGGGTGGTTTGTGGACATTGAGGGTGGAAATCTTC-AGACTCTGTTGCCTGGGATTGTTGTTGGATTGTGCAAACTTCGGGTGCTCATTACTCAAGTAGTGATATTTATGCTTCTTTAAAAAAAAAAAAAAAAAA] [+] EMBL CF291311 [AATGGCGACGGTGGCCGGCGACGATGGCGGCGGCGGCGGTGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTGGAGTTCGA GTTCCGG CCCGACGGGAAGCTCCGGTACGCCAACAACT CCAACTACAAGAAGGACACCATGAT CCGCAAGGAGGTGTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCACCAGGATCATCCACGAATCCGAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGAC CGCGTGGGAAGGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTTAAGTGC TTCGTGTTTTCACTCATCAATCTCCACTTCAAGATC AAGCCCA TTCAATCTTGAGCTCCTTTCAGTTTCTTAATTGTATTATGGTCAGTGTT AGAGAGCTCAGTACAATGTATGATCTGATCCAGTGAGTTAA CCCTGATGACTTTTGGGTGGGTTt ] [+] EMBL BI797342 [ aAAGTTC GGCACGAGTTTCTGGAGTTCGAGGTTCCGG CCCGACGGGAAGCTCCGGTACGCCAACAACT CCAACTACAAGAAGGACACCATGAT CCGCAAGGAGGTGTTCGTCTCCCCCTCCGTCCTCCGCGA GCCACCAGGATCATCCACGAATCCGAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGAC CGCGTGGGAAGGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTGAAGTGC TTCGTGTTTTCACTCATCAATCTCCACTTCAAGATC AAGCCCA TTCAATCTTGAGCTCCTTTCAGTTTCTTAATTGTATTGTGGTCAGTGTT AGAGAGCTCTGTACAATGTATGATCTGATCCAGTGAGTTAACCCCTGATGACTTTT GGT GTTTGTGGACATTGAGGGTGGAAATCTTCAAGACT ] [+] EMBL AU100960 [ CGGNCACGAGTTCCTGGAGTTCGA GTTCCGGCCCCGACGGGAAGNTCCGGTACGCCAACAACTCCCAACTACAAGAAGGACACCATGATCCCGCAAGGAGGTGTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCACCAGGATCATCCACGAATCCGAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGAC CGCGTGGGAAGGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTTAAGTGC TTCGTGTTTTCACTCATCAATCTCCACTTCAAGATC AAGCCCA TTCAATCTTGAGCTCCTTTCAGTTTCTTAATTGTATTATGGTCAGTGTT AGAGAGCTCAGTACAATGTATGATCTGATCCAGTGAGTTAA CCCTGATGACTTTTGGGTGGTTTGTGGACATTGAGGGTGGAAATCTTC AGACTCTGTTGCCTGGGATTGTTGTTGGATTGTGCAAACTTCGGGTGCTCATTACTCAAGTAGTGATATTTATGCTTCTTTAAAAAAAAAAAAAAAAAA] [+] EMBL C28552 [ CGGGCACGAGTTCCTGGAGTTCGA GTTCCGG CCCGACGGGAAGCTCCGGTACGCCAACAACT CCAACTACAAGAAGGACACCATGAT CCGCAAGGAGGTGTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCACCAGGATCATCCACGAATCCGAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGACGAACGTGGGAAGGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTTAAGTGCTTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAAGCCCATTTAAATCTTGAGCTNCTTTCAGTTTCTTAATTGTATTATGGTCAGTGTTAAGAGAG TCAGTACAAT ] [+] EMBL BI795286 [ CGAGGCCACCAGGATCATCCACGAATCCGAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGAC CGCGTGGGAAGGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTGAAGTGC TTCGTGTTTTCACTCATCAATCTCCACTTCAAGATC AAGCCCA TTCAATCTTGAGCTCCTTTCAGTTTCTTAATTGTATTGTGGTCAGTGTT AGAGAGCTCTGTACAATGTATGATCTGATCCAGTGAGTTAA CCCTGATGACTTTTGGGTGGTTTGTGGACATTGAGGGTGGAAATCTTC AGACTCTGTTGCCTGGGATTGTTGTTGaaaaaaaa ] consensusID : consensus_15139#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence [CGACGGCAAGCTCCNTACGCCAACAACTCCAACTACAAGAACGACNCCNTGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTTATGAAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCTTGGGGAGGCAGGAGCTCGAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGATTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTGAAATGTTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCNGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTGGTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATTGTTGTTGGATTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTNGTGATATTTATTATTGTGAAATCTTTTTCTNCTCCAAAAAAAAAAAAAAAAAA] [+] EMBL C98030 [CGACGGCAAGCTCCNTACGCCAACAACTCCAACTACAAGAACGACNCCNTGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTTATGAAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCTTGGGGAGGCAGGAGCTCGAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGATTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTGAAATGTTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCNGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTGGTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATTGTTGTTGGATTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTNGTGATATTTATTATTGTGAAATCTTTTTCTNCTCCAAAAAAAAAAAAAA ] [+] EMBL AU030435 [ cgCGACGTCCAGACCAGCAGGGCCCCTGAGGNCCTCCGCATCTTCTACTNCCTCGTCCAGGATCTGAAATGTTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTGGTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATTGTTGTTGGATTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCTTTTTCTAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15139#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [AAGCGGCGGCGGNAGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGNGCGCCGGCAAGGNACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGATTTCCTCGAGTTCNAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGAGGTCTTCGTNTCCCCCTCCGTCCTCCGCNAGCCCGGAGGATCATCCAGGAGTCCGAGATTATAAAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCTTGGGGAGGCAGGAGCTCGAGATTNTTATGGGAACGAGCACATNTCTTAACACCTCCAAGATTGGNTCCTTGTCGACGTCAGACCAGAAAGACCTTAGGGCTCCGATCTTTTATACTCGTCAGGTC] [+] EMBL AU069298 [AAGCGGCGGCGGNAGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGNGCGCCGGCAAGGNACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGATTTCCTCGAGTTCNAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGAGGTCTTCGTNTCCCCCTCCGTCCTCCGCNAGCCCGGAGGATCATCCAGGAGTCCGAGATTATAAAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCTTGGGGAGGCAGGAGCTCGAGATTNTTATGGGAACGAGCACATNTCTTAACACCTCCAAGATTGGNTCCTTGTCGACGTCAGACCAGAAAGACCTTAGGGCTCCGATCTTTTATACTCGTCAGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15139#0 CGCCTCTATTTGCGTTGCGAGGCGACGACGTGCCAACCACGAACAGAGGCGGCGCTGCAA 60 consensus_15139#3 ------------------------------------------------------------ consensus_15139#1 ------------------------------------------------------------ consensus_15139#2 ------------------------------------------------------------ consensus_15139#0 AATCTCGCGACCAAGCGGCGGCGGC-GGCGGGAGAGAACGAGAGGTGACCGATGGCGACG 119 consensus_15139#3 ------------AAGCGGCGGCGGNAGGCGGGAGAGAACGAGAGGTGACCGATGGCGACG 48 consensus_15139#1 ---------------------------------------------------------AAT 3 consensus_15139#2 ------------------------------------------------------------ consensus_15139#0 GGCGGCGCCGCCGGCGAGGA-CGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGT 178 consensus_15139#3 GGCGGNGC-GCCGGCAAGGNACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGT 107 consensus_15139#1 GGCGACGGTGGCCGGCGACGATGGCGGCGGCGGCGGTGAGTTCTACCTGCGGTACTACGT 63 consensus_15139#2 ------------------------------------------------------------ consensus_15139#0 GGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAA 238 consensus_15139#3 GGGGCACAAGGGGAAGTTCGGGCACGATTTCCTCGAGTTCNAGTTCCGCCCCGACGGCAA 167 consensus_15139#1 GGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTGGAGTTCGAGTTCCGGCCCGACGGGAA 123 consensus_15139#2 ---------------------------------------------------CGACGGCAA 9 ****** ** consensus_15139#0 GCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTT 298 consensus_15139#3 GCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAG-AGGTCTT 226 consensus_15139#1 GCTCCGGTACGCCAACAACTCCAACTACAAGAAGGACACCATGATCCGCAAGGAGGTGTT 183 consensus_15139#2 GCTCCN-TACGCCAACAACTCCAACTACAAGAACGACNCCNTGATCCGCAAGGAGGTCTT 68 ***** ************************** *** ** *********** **** ** consensus_15139#0 CGTCTCCCCCTCCGTCCTCC-GCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATT-ATG 356 consensus_15139#3 CGTNTCCCCCTCCGTCCTCC-GCNAG-CCCGGAGGATCATCCAGGAGTCCGAGATT-ATA 283 consensus_15139#1 CGTCTCCCCCTCCGTCCTCC-GCGAGGCCACCAGGATCATCCACGAATCCGAGATT-ATG 241 consensus_15139#2 CGTCTCCCCCTCCGTCCTCCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTTATG 128 *** **************** ** ** ** *********** ** ********* ** consensus_15139#0 AAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCGTGGGGAGGCAGGAGCTCGAGATT 416 consensus_15139#3 AAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCTTGGGGAGGCAGGAGCTCGAGATT 343 consensus_15139#1 AAGGAGGATGACAGCAACTGGCCGGAGCCAGACCGCGTGGGAAGGCAGGAGCTGGAGATC 301 consensus_15139#2 AAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCTTGGGGAGGCAGGAGCTCGAGATT 188 ******** **** ********* ***** ****** **** *********** ***** consensus_15139#0 GTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGATTGGCTCCCTCGTCGACGTC 476 consensus_15139#3 NTTATGGG-AACGAGCACATNTC--TTAACACCTCCAAGATTGGNTCCTT-GTCGACGTC 399 consensus_15139#1 GTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTC 361 consensus_15139#2 GTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGATTGGCTCCCTCGTCGACGTC 248 * ***** *********** ** * * ************ ** *** * ********* consensus_15139#0 CAGACCAGCAAGGACCCTGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTGAAA 536 consensus_15139#3 -AGACCAG-AAAGACCTTAGGG--CTCCG-ATCTTTTATA--CTCGTC--AGGTC----- 445 consensus_15139#1 CAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTTAAG 421 consensus_15139#2 CAGACCAGCAAGGACCCTGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTGAAA 308 ******* ** **** ** ***** ***** ** ****** * ** consensus_15139#0 TGTTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAGCCTATTCAATCTTGAGCT 596 consensus_15139#3 ------------------------------------------------------------ consensus_15139#1 TGCTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAGCCCATTCAATCTTGAGCT 481 consensus_15139#2 TGTTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAGCCTATTCAATCTTGAGCT 368 consensus_15139#0 CCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATG 656 consensus_15139#3 ------------------------------------------------------------ consensus_15139#1 CCTTTCAGTTTCTTAATTGTATTATGGTCAGTGTTAGAGAGCTCAGTACAATGTATGATC 541 consensus_15139#2 CCTTTCAGTCTCTTAATTGTGTTATGGCCNGTTTTAGAGAATTCTGTATTAT-TATG-TA 426 consensus_15139#0 ATCCAGCGGGTTAACCATGGTGGTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATAC 716 consensus_15139#3 ------------------------------------------------------------ consensus_15139#1 TGATCCAGTGAGTTAACCCTGATGACTTTTGGGTGGTTTGTGGACATTGAGGGTGGAAAT 601 consensus_15139#2 TGATCCAGCGGGTTAACCATGGTGG----TGGGGTGTTTGTGGA-ACAGAGGGTGGAA-T 480 consensus_15139#0 TTTGGTGCCTGGGATTGTTGTTGGATTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGT 776 consensus_15139#3 ------------------------------------------------------------ consensus_15139#1 CTTCAGACTCTGTTGCCTGGGATTGTTGTTGGATTGTGCAAACTTCGGGTGCTCATTACT 661 consensus_15139#2 CTTAATACTTTGGTGCCTGGGATTGTTGTTGGATTGTGCAAGCTTTGGGTGCTCGTTACT 540 consensus_15139#0 GATATTTATTATTGTGAAATCTTTTTCTACTCCAAGGAGTCTCTCCCTGAAGTAGCA-- 833 consensus_15139#3 ----------------------------------------------------------- consensus_15139#1 CAAGTAGTGATATTTATG----------------CTTCTTTAAAAAAAAAAAAAAAAAA 704 consensus_15139#2 CAAGTNGTGATATTTATTATTGTGAAATCTTTTTCTNCTCCAAAAAAAAAAAAAAAAAA 599 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||