cluster # 15152

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Oryza sativa
cluster # 15152 cluster # 15152 Sequences # 20 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15152#0 length = 1197 sequences # 12

consensus_15152#1 length = 1153 sequences # 7
consensus_15152#2 length = 183 sequences # 1

consensusID : consensus_15152#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1197
fasta sequence

                              [TTCCTCGAGCACTGTTGGCCTACTGGATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCTCCTCCTCCTCCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACG-GCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGGCGGCGCCAGC-TTCAACCCCACCGCCCTCGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGCCCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACACGGGTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGT-CAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT-CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAAAAA-------AAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGGTCGCGGCCGCTAGAC]

[+] EMBL AK109424             [TTCCTCGAGCACTGTTGGCCTACTGGATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCTCCTCCTCCTCCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACG GCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGGCGGCGCCAGC TTCAACCCCACCGCCCTCGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGCCCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACACGGGTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGT CAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAAAAA       AAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGGTCGCGGCCGCTAGAC]
[+] EMBL AK069381             [                                                       CTCCTCCTCCTCCTCCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACG GCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGGCGGCGCCAGC TTCAACCCCACCGCCCTCGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGCCCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGGTCTCGGAGCTGATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACACGGGTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGT CAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAA                                                                            ]
[+] EMBL AK106185             [                                                                            CAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACG GCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGGCGGCGCCAGC TTCAACCCCACCGCCCTCGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGCCCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACACGGGTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGT CAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAAtta       g                                                     ]
[+] EMBL AU101339             [                                                                                CCAATCCAATCCGATTCAGAAGTAGAGCGAGCAGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTNCGTATCGACGCTGGGGGCGT NACG GCGGCGGTGACGTCGTACCTTCGCATCCACGAGGGGAT CACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTTCGAAG CCTCGG GGCGCAANT TTCAACCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU068196             [                                                                                     CCAATCCGATTCANAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTNTCGACGCTGGGGGCGT GNGG NCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCAACGCCCTCGG GGCGCNAACTTTCAACCCCACCGCCCTCGCCGNCTTCCACGCCGNCGGCCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU162277             [                                                                                       AATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACG GCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGGCGGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU164179             [                                                                                            GATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACGNGCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCNACGNCCTCGG GGCG CAGC TTCAACCCCACCGNCCTCGCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU164180             [                                                                                            GATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACG GCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCANCGTCTCCCTCCTCTCCGTGCTCCTCTTCGNCTTCAACCTNCTCTNCGACGGCCTCGGGGGCGCAAGCTTTCAACCCCACCGGCCTCGCCGgc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL C99574               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCATCGTACAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGNACAATCGCCACAACACATGGGNGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTTNCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAAAAA       A                                                     ]
[+] EMBL AU092450             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATNTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATNCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAAAAA                                                             ]
[+] EMBL AU068197             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAATTAGTTTGTGAAAAAAAAAAAAAA                                        ]
[+] EMBL AU166053             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCNCAAACTTCAACTCAGGAGTTGGTACANATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCNCCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCNCATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAAAAA       AAAAAAAAAAAAAAAaaaaaa                                 ]




>consensus_15152#0
TTCCTCGAGCACTGTTGGCCTACTGGATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCT
CCTCCTCCTCCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTG
CGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGT
GGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACGGCGGCGGTGACGTCGTACCTCCGCA
TCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCT
TCGCCTTCAACCTCCTCTGCGACGCCCTCGGCGGCGCCAGCTTCAACCCCACCGCCCTCG
CCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGCCC
TCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGA
TGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACACGG
GTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCG
TCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCC
TCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCT
GGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCC
CTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCAC
CTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGG
TACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATA
ATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAA
ACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATT
GGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAA
AAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGGTCGCGGCCGCTAGAC

consensusID : consensus_15152#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1153
fasta sequence

                              [TAGGAGCGTAGCTATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCTCCTCCTCCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACGGCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGCCCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGATGCCGGAGCAGTACAA-GCACATGCTC-GGGGGGCCATC-GCTCAAGGTGGATCTCCACACGGGTGCCGCCGCC-GAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTG-CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATT-GGTCTTG-TTTGC-TCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAATTAGTTTGTGTGTTCTTGTATTCTCTACAAAAAAAAAAAAAAAAAATAAAAAAAAAAAA]

[+] EMBL AK106173             [TAGGAGCGTAGCTATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCTCCTCCTCCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACGGCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGCCCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGATGCCGGAGCAGTACAA GCACATGCTC GGGGGGCCATC GCTCAAGGTGGATCTCCACACGGGTGCCGCCGCC GAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTG CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATT GGTCTTG TTTGC TCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAATTAGTTTGT                                                  ]
[-] EMBL CB672069             [                                                                                                                                                                                                                                                                                                                                                                                                       GCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGATGCCGGAGCAGTACAA GCACATGCTC GGGGGGCCATC GCTCAAGGTGGATCTCCACACGGGTGCCGCCGCC GAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTG CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATT G                                                                                                                        ]
[-] EMBL CA753083             [                                                                                                                                                                                                                                                                                                                                                                                                                                           GAGGTGAGGCCGGAGCAGTACAAGGAACATGCTCGGGGGGGCCATCGGTTCAAGGTGGATCTCCACACGGGTGCCGCCGCCGGAGCTGGTGCTCACCTTCGTCATCACATTGGCGGTGTTTTGGATCATGGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGAAGGTTCTCCATTTCCACCGTTGGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTG CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTCAATGTAATTTCAATCATTCATT GGTCTTG TTTGC TCTTGAACTGGTGGATGG                                                                                         ]
[+] EMBL AU182622             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTG CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATT GGTaaaa aaaaa                                                                                                            ]
[-] EMBL BE530904             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTG CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTCAATGTAATTTCAATCATTCATT GGTCTTG TTTGC TCTTGAACTGG                                                                                                ]
[+] EMBL AU029632             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATT GGTCTTG TTTGC TCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAATTAGTTTGTGTGTTCTTGTATTCTCTACAAAAAAAAAAAAAAAAAATAAAAAAAAAAAA]
[+] EMBL C74300               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTTTTGTTGGCGCTGTTCTTGCTG CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGGTCTTGTTTTGCNCCTTGAACTGGTGGgat                                                                                          ]




>consensus_15152#1
TAGGAGCGTAGCTATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCTCCTCCTCCGATTC
CAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGC
GGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTC
GACGCTGGGGGCGTCGACGGCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCA
CTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCT
CTGCGACGCCCTCGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCT
CTTCCCCCTCGCCCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGC
GATCTCGGAGCTGATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGT
GGATCTCCACACGGGTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGT
GCTCTGGATCATCGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCAT
CTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGC
CAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGT
CTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTTCAGGGCCGTGTT
CCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTC
AACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAA
TGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTT
CGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAAT
TTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTAT
AAATTTATCAGTAATTAGTTTGTGTGTTCTTGTATTCTCTACAAAAAAAAAAAAAAAAAA
TAAAAAAAAAAAA

consensusID : consensus_15152#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence

                              [CGANTTGCGGTTGCGGCGGTNCGGGCNGCGGCGGCGGACGGGCGGTTTTACGTTCCTGTGGGTGCTGTGCGTNTCGACGTGGGGGCCANGTCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTC]

[+] EMBL C27030               [CGANTTGCGGTTGCGGCGGTNCGGGCNGCGGCGGCGGACGGGCGGTTTTACGTTCCTGTGGGTGCTGTGCGTNTCGACGTGGGGGCCANGTCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTC]




>consensus_15152#2
CGANTTGCGGTTGCGGCGGTNCGGGCNGCGGCGGCGGACGGGCGGTTTTACGTTCCTGTG
GGTGCTGTGCGTNTCGACGTGGGGGCCANGTCGGCGGTGACGTCGTACCTCCGCATCCAC
GAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCC
TTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15152#0      TTCCTCGAGCACTGTTGGCCTACTGGATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCT 60
consensus_15152#1      ------------TAGGAGCGTAGCT-ATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCT 47
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      CCTCCTCCTCCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTG 120
consensus_15152#1      CCTCCT---CCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTG 104
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      CGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTG--ACGTTCCT 178
consensus_15152#1      CGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTG--ACGTTCCT 162
consensus_15152#2      --CGANTTGCGGTTGCGGCGGTNCGGGCNGCGGCGGCGGACG-GGCGGTTTTACGTTCCT 57
                             * ***** ******** ***** ************* ******   ********

consensus_15152#0      GTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACGGCGGCGGTGACGTCGTACCTCCG 238
consensus_15152#1      GTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACGGCGGCGGTGACGTCGTACCTCCG 222
consensus_15152#2      GTGGGTGCTGTGCGTNTCGACGTGGGGGCC----ANGTCGGCGGTGACGTCGTACCTCCG 113
                       *************** ******  **** *    * * **********************

consensus_15152#0      CATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCT 298
consensus_15152#1      CATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCT 282
consensus_15152#2      CATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCT 173
                       ************************************************************

consensus_15152#0      CTTCGCCTTCAACCTCCTCTGCGACGCCCTCGGCGGCGCCAGCTTCAACCCCACCGCCCT 358
consensus_15152#1      CTTCGCCTTCAACCTCCTCTGCGACGCCCTCG---------------------------- 314
consensus_15152#2      CTTCGCCTTC-------------------------------------------------- 183
                       **********                                                  

consensus_15152#0      CGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGC 418
consensus_15152#1      --CCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGC 372
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      CCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCT 478
consensus_15152#1      CCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCT 432
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      GATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACAC 538
consensus_15152#1      GATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACAC 492
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      GGGTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCAT 598
consensus_15152#1      GGGTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCAT 552
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      CGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTG 658
consensus_15152#1      CGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTG 612
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      CCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGG 718
consensus_15152#1      CCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGG 672
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      CTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATG 778
consensus_15152#1      CTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATG 732
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      CCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGC 838
consensus_15152#1      CCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGC 792
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      ACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTT 898
consensus_15152#1      ACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTT 852
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      GGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAA 958
consensus_15152#1      GGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAA 912
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      TAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGAC 1018
consensus_15152#1      TAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGAC 972
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      AAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCA 1078
consensus_15152#1      AAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCA 1032
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      TTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGT 1138
consensus_15152#1      TTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGT 1092
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      AAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGGTCGCGGCCGCTAGAC- 1197
consensus_15152#1      AATTAGTTTGTGTGTTCTTGTATTCTCTACAAAAAAAAAAAAAAAAAATAAAAAAAAAAA 1152
consensus_15152#2      ------------------------------------------------------------
                                                                                   

consensus_15152#0      -
consensus_15152#1      A 1153
consensus_15152#2      -