cluster # 15155

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Oryza sativa
cluster # 15155 cluster # 15155 Sequences # 20 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15155#0 length = 920 sequences # 16

consensus_15155#1 length = 673 sequences # 2
consensus_15155#2 length = 415 sequences # 2

consensusID : consensus_15155#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 920
fasta sequence

                              [GCAACGTGAAGTGCATGACGCGGTTCAACCTGAGGGAGCACGAGGCCGGGAGGAAGCACCGGGACAAGGTGGCCAGCAACGCCGGCGAGAAGAACGTCCGGTGCCAGCTCTGCGACGTGCTGCTCGCCAGCGAGCTCAACGTCGCGCAGCACTACGCCGGCAAGCAGCACCTCCACCGGCTCCGCCTCAGCCGCCGCCGCTTGTCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCGTGGAGGTAGTGCTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACTGGAGCAAAGAACCTTTACATCATTTCTGTGAAGGGAATCAAGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGAAAAAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCAGCTGTCATCGTGAGGCAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTAT-CGGAAAGGAG-TGCGCTGATCTCT-GGCCCAGGATT-GCAAGTGCAGCAAATGCGA-TCGTCTAATCGAAGCAGCCATTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCT-AGTTTTGTATCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCT-GGATT-ATGCCCCGTT-AGCTTC-TTTAAACACATTTGAGCAATATGATATGGCACTGATGCCT-AGCCTGACATTTGGTCCTA-GTTTAAAACTTAAAGCTGTCTTGGAATTTCGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTGCGT]

[+] EMBL AU181031             [GCAACGTGAAGTGCATGACGCGGTTCAACCTGAGGGAGCACGAGGCCGGGAGGAAGCACCGGGACAAGGTGGCCAGCAACGCCGGCGAGAAGAACGTCCGGTGCCAGCTCTGCGACGTGCTGCTCGCCAGCGAGCTCAACGTCGCGCAGCACTACGCCGGCAAGCAGCACCTCCACCGGCTCCGCCTCAGCCGCCGCCGCTTGTCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCGTGGAGGTAGTGCTGGTAACAAGTTCCGGATGTCACTGGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK121994             [                                                                                                                                                                                                  CGCCGCTTGTCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCGTGGAGGTAGTGCTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACTGGAGCAAAGAACCTTTACATCATTTCTGTGAAGGGAATCAAGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGTTACTGTGAAAAAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCAGCTGTCATCGTGAGGCAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTAT CGGAAAGGAG TGCGCTGATCTCT GGCCCAGGATT GCAAGTGCAGCAAATGCGA TCGTCTAATCGAAGCAGCCATTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCT AGTTTTGTATCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCT GGATT ATGCCCCGTT AGCTTC TTTAAACACATTTGAGCAATATGATATGGCACTGATGCCT AGCCTGACATTTGGTCCTA GTTTAAAACTTAAAGCTGTCTTGGAATTTCGAT                                               ]
[+] EMBL CF338815             [                                                                                                                                                                                                  CGCCGCTTGTCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCGTGGAGGTAGTGCTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACTGGAGCAAAGAACCTTTACATCATTTCTGTGAAGGGAATCAAGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGAAAAAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCAGCTGTCATCGTGAGGCAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTAT CGGAAAGGAG TGCGCTGATCTCT GGCCCAGGATT GCAAGTGCAGCAAATGCGA TCGTCTAATCGAAGCAGCCATTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAG                                                                                                                                                                                                                                 ]
[+] EMBL AI978548             [                                                                                                                                                                                                         TGTCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCGTGGAGGTAGTGCTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACTGGAGCAAAGAACCTTTACATCATTTCTGTGAAGGGAATCAAGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGAAAAAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCAGCTGTCATCGTGAGGCAGCGCAAGCCGTGGCGCCGAANGGATGGTGTCTACATGTACTTTGAAGACAATGCTGGAGTCATTNNNAACCCCAAGGGAGAGATGAAnnnnn                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AI978546             [                                                                                                                                                                                                         TGTCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCGTGGAGGTAGTGCTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACTGGAGCAAAGAACCTTTACATCATTTCTGTGAAGGGAATCAAGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGNNNATGGCTACTGTGAAAAAAGGGAAGCCTGACCTGAGGAAGANGGTCATGCCAGCTGTCATCGTGAGGCNNCGCAAGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATGCTGGAGTCATTGTGAACCCCAnnng                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OS249                [                                                                                                                                                                                                           TCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCGTGGAGGTAGTGCTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACTGGAGCAAAGAACCTTTACATCATTTCTGTGAAGGGAATCAAGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGAAAAAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCAGCTGTCATCGTGAGGCAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATNCTGGAGTCATTGTGAACCCCAAGGGAGAGATNNANGGTTCTGCCATCACTGGGNCTATNGGGAAAGGAGTTCCGCTTATCTNTNGGCCNGGGTTT TCAAGTTCAGCAAATGCGA TCGTC                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU057857             [                                                                                                                                                                                                           TCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCGTGGAGGTAGTGCTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACTGGAGCAAAGAACCTTTACATCATTTCTGTGAAGGGAATCAAGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGAAAAAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCAGCTGTCATCGTGAGGCAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTAT CGGAAAGGAG TGCGCTGATCTCT GGCCCAGGATT GCAAGTGCAGCAAATGCGATTCGTCTAATCGAAGCAGCCATTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCTAAGTTTTGTATCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCTGGGATTAATGCCCCGTTAAGCTTCTTTTAAACACATTTGAGCAATATGATATGGCACTGATGCCTAAGCCTGACATTTGGGCCTA GTTTAAAACTTAAAGCT                                                               ]
[+] EMBL AU225282             [                                                                                                                                                                                                           gccgctCTTCCGTTTCCAAGATGTCGAAGCGAGGGCGTGGAGGTAGTGCTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACTGGAGCAAAGAACCTTTACATCATTTCTGTGAAGGGAATCAAGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGAAAAAAGGGAAGCCTGACCTGAGGAAAAANGTCATGCCANCTGTCATCGTGAGGCAGCGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL D42757               [                                                                                                                                                                                                                                        CGAGGGCGTGGAGGTAGTGCTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACTGGAGCAAAGAACCTTTACATCATTTCTGTGAAGGGAATCAAGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGAAAAAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCAGCTGTCATCGTGAGGCAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATNCTGGAGTCATTGTGAACCCCA                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU058251             [                                                                                                                                                                                                                                          AGGGCGTGGAGGTAGTGCTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACTGGAGCAAAGAACCTTTACATCATTTCTGTGAAGGGAATCAAGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGAAAAAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCAGCTGTCATCGTGAGGCAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTAT CGGAAAGGAG TGCGCTGATCTCT GGCCCAGGATT GCAAGTGCAGCAAATGCGA TCGTCTAATCGAAGCAGCCATTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCT AGTTTTGTATCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCT GGATT ATGCCCCGTT AGCTTC TTTAAACACATTTGAGC ATAT                                                                                                                       ]
[-] EMBL AI978547             [                                                                                                                                                                                                                                                                                                                                                                                                                                                       nnnnnGAANNTCATGCCAGCTGTCATCGTGANNNAGCGCANGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTAT CGGAAAGGAG TGCGCTGATCTCT GGCCCAGGATT GCAAGTGCAGCAAATGCGA TCGTCTAATCGAAGCAGCCATTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCT AGTTTTGTATCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCT GGATT ATGCCCCGTT AGCTTC TTTAAACACATTTGAGCAATATGATATGGCACTGATGCCT AGCCTGACATTTGGTCGTA GTTTAAAACTTAAAGCTG                                                              ]
[-] EMBL AI978545             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                            nTCATCGTNNNNNAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTAT CGGAAAGGAG TGCGCTGATCTCT GGCCCAGGATT GCAAGTGCAGCAAATGCGA TCGTCTAATCGAAGCAGCCATTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCT AGTTTTGTATCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCT GGATT ATGCCCCGTT AGCTTC TTTAAACACATTTGAGCAATATGATATGGCACTGATGCCT AGCCTGACATTTGGTCGTA GTTTAAAACTTAAAGCTG                                                              ]
[+] EMBL AU057858             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       gcnAGATGAAAGGTTNTNCCATCACTGGACCTAT CGGAAAGGAG TGCGCTGATCTCT GGCCCAGGATT GCAAGTGCAGCAAATGCGA TCGTCTAATCGAAGCAGCCATTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCT AGTTTTGTATCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCT GGATT ATGCCCCGTT AGCTTC TTTAAACACATTTGAGCAATATGATATGGCACTGATGCCT AGCCTGACATTTGGTCCTA GTTTAAAACTTAAAGCTGTCTTGGAATTTCGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                ]
[+] EMBL CF322401             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CT GGCCCAGGATT GCAAGTGCAGCAAATGCGA TCGTCTAATCGAAGCAGCCATTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCT AGTTTTGTATCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCT GGATT ATGCCCCGTT AGCTTC TTTAAACACATTTGAGCAATATGATATGGCACTGATGCCT AGCCTGACATTTGGTCCTA GTTTAAAACTTAAAGCTGTCTTGGAATTTCAAAAAAAAAAAAAAAAA                                 ]
[-] EMBL CF322402             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 T GGCCCAGGATT GCAAGTGCAGCAAATGCGA TCGTTTAATTGAAGCAGCCATTGAAAGTTCCATTAGCGTTTTTTTTTCTTGAAAGAGTTAAAAGAGCTGCT AGTTTTGTATCGCCCTTAAAAATAGTTTCACAGGATTATGTTTGTGCCGCT GGATT ATGCCCCGTT AGCTTC TTTAAACACATTTGAGCAATATGATATGGCACTGATGCCT AGCCTGACATTTGGTCCTA GTTTAAAACTTAAAGCTGTCTTGGAATTTC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTGCGT]
[-] EMBL OSA312760            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGATTGGCAAGTGCAGCAAATGCGA TCGTCTAATCGAAGCAGCCATTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCT AGTTTTGTATCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCT GGATT ATGCCCCGTT AGCTTC TTTCCCCACATTTGAGCAATATGATATGGCACTGATGCCT AGCCTGACATTTGGTCGTAGGTTTA                                                                           ]




>consensus_15155#0
GCAACGTGAAGTGCATGACGCGGTTCAACCTGAGGGAGCACGAGGCCGGGAGGAAGCACC
GGGACAAGGTGGCCAGCAACGCCGGCGAGAAGAACGTCCGGTGCCAGCTCTGCGACGTGC
TGCTCGCCAGCGAGCTCAACGTCGCGCAGCACTACGCCGGCAAGCAGCACCTCCACCGGC
TCCGCCTCAGCCGCCGCCGCTTGTCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCG
TGGAGGTAGTGCTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGT
GAACTGTGCTGACAACACTGGAGCAAAGAACCTTTACATCATTTCTGTGAAGGGAATCAA
GGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGAA
AAAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCAGCTGTCATCGTGAGGCAGCGCAA
GCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATGCTGGAGTCATTGT
GAACCCCAAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGC
TGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATT
GAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCTAGTTTTGTATC
GACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCTGGATTATGCCCCGTTAGCTT
CTTTAAACACATTTGAGCAATATGATATGGCACTGATGCCTAGCCTGACATTTGGTCCTA
GTTTAAAACTTAAAGCTGTCTTGGAATTTCGATAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAATGTCATGCCGTTGCGT

consensusID : consensus_15155#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 673
fasta sequence

                              [CGCCGCCGCCGCCGCCGCTTGTCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCGTGAAGGTAGTGCTTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACTGGAGCGAAGAACCTTTACATCATTTCTGTGAAGGGAATCAAGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGAAAAAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCA-GCTGTCATCGTGAGGCAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCTAGTTTTGTATCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCTGGATTATGCCCCGTTAGCTTCTTTAAACACATTTGAGCAATATGATATGGCACTGATGCCTAGCCTGACATTTGGTCGTAAAAAAAAAAAAAAG]

[-] EMBL OSA420718            [CGCCGCCGCCGCCGCCGCTTGTCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCGTGAAGGTAGTGCTTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACTGGAGCGAAGAACCTTTACATCATTTCTGTGAAGGGAATCAAGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGAAAAAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCA GCTGTCATCGTGAGGCAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCTAGTTTTGTATCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCTGGATTATGCCCCGTTAGCTTCTTTAAACACATTTGAGCAATATGATATGGCACTGATGCCTAGCCTGACATTTGGTCGTAAAAAAAAAAAAAAG]
[+] EMBL BI809601             [                                                                                                                                                                   CTGTGAAGGGAATC AGGGACGCCTTAACAGGCTTCCTTCTGCTTGT TTGGGAACAT GTTAT GCTACTGTGAAAAAAGGGAAGCCTGACCTGAGGAAGAA GTCATGCCACGCTGTCATCGTGA GCAGCGCAA CCGTGGCCCCGAAAGGATGGTGTCTACATGTACTTTGAAGACCATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAA GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTCCAGC AATGCGATCGTCTAATCGAA CAGCCATTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCTAGTTTTGTATCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCTGGATTATGCCCCGTTAGCTTCTTTAAACACATTTGAGCAATATGATATGGCACTGATGCCTAGCCTGACATTTGGTCGTAAAAAA         ]




>consensus_15155#1
CGCCGCCGCCGCCGCCGCTTGTCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCGTG
AAGGTAGTGCTTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTG
AACTGTGCTGACAACACTGGAGCGAAGAACCTTTACATCATTTCTGTGAAGGGAATCAAG
GGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGAAA
AAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCAGCTGTCATCGTGAGGCAGCGCAAG
CCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAGACAATGCTGGAGTCATTGTG
AACCCCAAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCT
GATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTG
AAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCTAGTTTTGTATCG
ACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCTGGATTATGCCCCGTTAGCTTC
TTTAAACACATTTGAGCAATATGATATGGCACTGATGCCTAGCCTGACATTTGGTCGTAA
AAAAAAAAAAAAG

consensusID : consensus_15155#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 415
fasta sequence

                              [TGGTGTCTACATGTACTTTGAAGCACCATGCTGGAGTCCTTGTGAACCCCCAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCCAGTGCAGCCAATGCGATCGTCTAATCGAAGCAGCCCTTGAAAGTTCCCTTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCTAGTTTTGTATCGACCTTAAAAATAGTTTCCCCGGATTATGTTTGTGCCCCTGGATTATGCCCCNTTAGCTTCTTTAAACACATTTGA-CCATATGATAT-GCCCTGATGCCTA-CCTGACCTTTGGTCGTAGTTTAAAACTTAAA-CT-TCTTAGAATTTCGATGACGCGTCCCCTTTTTCCTCCAAAGTGTCTTTTTTGGTTAAAAA]

[+] EMBL BI794926             [TGGTGTCTACATGTACTTTGAAGCACCATGCTGGAGTCCTTGTGAACCCCCAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCCAGTGCAGCCAATGCGATCGTCTAATCGAAGCAGCCCTTGAAAGTTCCCTTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCTAGTTTTGTATCGACCTTAAAAATAGTTTCCCCGGATTATGTTTGTGCCCCTGGATTATGCCCCNTTAGCTTCTTTAAACACATTTGA CCATATGATAT GCCCTGATGCCTA CCTGACCTTTGGTCGTAGTTTAAAACTTAAA CT TCTTAGAATTTCGATGACGCGTCCCCTTTTTCCTCCA                      ]
[-] EMBL OSA312759            [                                                                                                                                                                                  GTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCTAGTTTTGTATCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCTGGATTATGCCCCGTTAGCTTCTTTAAACACATTTGAGCAATATGATATGGCACTGATGCCTAGCCTGACATTTGGTCGTAGTTTAAAACTTAAAGCTGTCTTAGAATTTCGATGACGCGTGCCATTTTTCCTGCAAAGTGTCTTTTTTGGTTAAAAA]




>consensus_15155#2
TGGTGTCTACATGTACTTTGAAGCACCATGCTGGAGTCCTTGTGAACCCCCAGGGAGAGA
TGAAAGGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGA
TTGCCAGTGCAGCCAATGCGATCGTCTAATCGAAGCAGCCCTTGAAAGTTCCCTTAGCGT
TTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCTAGTTTTGTATCGACCTTAAAAATAGTTT
CCCCGGATTATGTTTGTGCCCCTGGATTATGCCCCNTTAGCTTCTTTAAACACATTTGAC
CATATGATATGCCCTGATGCCTACCTGACCTTTGGTCGTAGTTTAAAACTTAAACTTCTT
AGAATTTCGATGACGCGTCCCCTTTTTCCTCCAAAGTGTCTTTTTTGGTTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15155#0      GCAACGTGAAGTGCATGACGCGGTTCAACCTGAGGGAGCACGAGGCCGGGAGGAAGCACC 60
consensus_15155#1      ------------------------------------------------------------
consensus_15155#2      ------------------------------------------------------------
                                                                                   

consensus_15155#0      GGGACAAGGTGGCCAGCAACGCCGGCGAGAAGAACGTCCGGTGCCAGCTCTGCGACGTGC 120
consensus_15155#1      ------------------------------------------------------------
consensus_15155#2      ------------------------------------------------------------
                                                                                   

consensus_15155#0      TGCTCGCCAGCGAGCTCAACGTCGCGCAGCACTACGCCGGCAAGCAGCACCTCCACCGGC 180
consensus_15155#1      ------------------------------------------------------------
consensus_15155#2      ------------------------------------------------------------
                                                                                   

consensus_15155#0      TCCGCCTCAGCCGCCGCCGCTTGTCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCG 240
consensus_15155#1      --CGCCGCCGCCGCCGCCGCTTGTCACCCCTTCCGTTTCCAAGATGTCGAAGCGAGGGCG 58
consensus_15155#2      ------------------------------------------------------------
                                                                                   

consensus_15155#0      TGGAGGTAGTGCT-GGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTG 299
consensus_15155#1      TGAAGGTAGTGCTTGGTAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCAGCCACTG 118
consensus_15155#2      ------------------------------------------------------------
                                                                                   

consensus_15155#0      TGAACTGTGCTGACAACACTGGAGCAAAGAACCTTTACATCATTTCTGTGAAGGGAATCA 359
consensus_15155#1      TGAACTGTGCTGACAACACTGGAGCGAAGAACCTTTACATCATTTCTGTGAAGGGAATCA 178
consensus_15155#2      ------------------------------------------------------------
                                                                                   

consensus_15155#0      AGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGA 419
consensus_15155#1      AGGGACGCCTTAACAGGCTTCCTTCTGCTTGTGTTGGGGACATGGTTATGGCTACTGTGA 238
consensus_15155#2      ------------------------------------------------------------
                                                                                   

consensus_15155#0      AAAAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCAGCTGTCATCGTGAGGCAGCGCA 479
consensus_15155#1      AAAAAGGGAAGCCTGACCTGAGGAAGAAGGTCATGCCAGCTGTCATCGTGAGGCAGCGCA 298
consensus_15155#2      ------------------------------------------------------------
                                                                                   

consensus_15155#0      AGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAG-ACAATGCTGGAGTCATT 538
consensus_15155#1      AGCCGTGGCGCCGAAAGGATGGTGTCTACATGTACTTTGAAG-ACAATGCTGGAGTCATT 357
consensus_15155#2      -------------------TGGTGTCTACATGTACTTTGAAGCACCATGCTGGAGTCCTT 41
                                          *********************** ** *********** **

consensus_15155#0      GTGAACCCCAAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGC 598
consensus_15155#1      GTGAACCCCAAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGC 417
consensus_15155#2      GTGAACCCCCAGGGAGAGATGAAAGGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGC 101
                       ********* **************************************************

consensus_15155#0      GCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCA 658
consensus_15155#1      GCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCA 477
consensus_15155#2      GCTGATCTCTGGCCCAGGATTGCCAGTGCAGCCAATGCGATCGTCTAATCGAAGCAGCCC 161
                       *********************** ******** ************************** 

consensus_15155#0      TTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCTAGTTTTGTA 718
consensus_15155#1      TTGAAAGTTCCATTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCTAGTTTTGTA 537
consensus_15155#2      TTGAAAGTTCCCTTAGCGTTTTCTCTTCTTGAAAGAGTTAAAAGAGCTGCTAGTTTTGTA 221
                       *********** ************************************************

consensus_15155#0      TCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCTGGATTATGCCCCGTTAGC 778
consensus_15155#1      TCGACCTTAAAAATAGTTTCCCAGGATTATGTTTGTGCCGCTGGATTATGCCCCGTTAGC 597
consensus_15155#2      TCGACCTTAAAAATAGTTTCCCCGGATTATGTTTGTGCCCCTGGATTATGCCCCNTTAGC 281
                       ********************** **************** ************** *****

consensus_15155#0      TTCTTTAAACACATTTGAGCAATATGATATGGCACTGATGCCTAGCCTGACATTTGGTCC 838
consensus_15155#1      TTCTTTAAACACATTTGAGCAATATGATATGGCACTGATGCCTAGCCTGACATTTGGTCG 657
consensus_15155#2      TTCTTTAAACACATTTGACCA-TATGATATGCC-CTGATGCCTA-CCTGACCTTTGGTCG 338
                       ****************** ** ********* * ********** ****** ******* 

consensus_15155#0      TAGTTTAAAACTTAAAGCTGTCTTGGAATTTCGATAAAAAAAAAAAAAAAAAAAAAAAAA 898
consensus_15155#1      TAAAAAAAAAAAAAAG-------------------------------------------- 673
consensus_15155#2      TAGTTTAAAACTTAAACTTCTTAGAATTTCGATGACGCGTCCCCTTTTTCCTCCAAAGTG 398
                       **    ****   **                                             

consensus_15155#0      AAAAAATGTCATGCCGTTGCGT 920
consensus_15155#1      ----------------------
consensus_15155#2      TCTTTTTTGGTTAAAAA----- 415