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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15171#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1151 fasta sequence
[GGAAGCAAACACAATTACACGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTGAGCCTCGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGTTGTACATACCTCCGGCGAGTGACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGACTTCGTCGTCTCGCTCACCGGCGCGCCGAACGCGGCCACGCCGTCGGTCGGGCAGTGGTGGGGCACCATCGAACAGCTCTACCTGTCCAACGCCGCCACGAACAGCCAGACCTCCACACGCGTGCTCCTCGATGAGCAGGTCTCGGACGAACAGTGCTCCCTCGGCAAGTCTCTCACCCTGGCTCAGATCGACCAGCTCGCCGCGCGCGTCGGCACCAAGAGGGGAGGCGTCGCGCTCGTCTTCACCGACGAGGACGTCACCGTCGAAGGCTTCTGCAGCAGCCGGTGCGGCAAGCACGGCTCGGACGCGAGCGCCGGCACCACCCACATCTGGGTCGGCAACTCTGCGAAGCAGTGCCCGGGGCAGTGCGCGTGGCCGTTCGCGCAGCCGGTGTACGGGCCACAGGGCACGCCGCTGGTGGCGCCCAACAACGACGTCGGCGCGGACGGGATGGTGATGATCCTCGCCTCGATGGTGGCCGGCACGGTGACCAACCCGTACGG-CGATGGGTTCTACCAGGGGCCCCAGGACGCGCCGCTGGAGGCGTGCTCGGCGTGCCCGGGAGTCTACGGCAGCGGCGCGTACCCGGGGAACGCCGGTAAACTCCTCGTCGACGCCACCACCGGAGCCAGCTACAACGCCAACGGCGCGAACAGGAGGAAGTACCTGCTCCCGGCGTTGTACAATCCCGCAACGTCCTCCTGCGACACGCTTGTGTAATCCATAGTGCCGGACACGTTACGTGTTCTGTACCTGTACGCTTGGGAAGTTGTACATACGAGTTGGGAAAGTAATGGAATCACTTTGTTCGTTCTAAAAAAAAAAAAAAAAAAAAAACTCGAGACT]
[+] EMBL AK101655 [GGAAGCAAACACAATTACACGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTGAGCCTCGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGTTGTACATACCTCCGGCGAGTGACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGACTTCGTCGTCTCGCTCACCGGCGCGCCGAACGCGGCCACGCCGTCGGTCGGGCAGTGGTGGGGCACCATCGAACAGCTCTACCTGTCCAACGCCGCCACGAACAGCCAGACCTCCACACGCGTGCTCCTCGATGAGCAGGTCTCGGACGAACAGTGCTCCCTCGGCAAGTCTCTCACCCTGGCTCAGATCGACCAGCTCGCCGCGCGCGTCGGCACCAAGAGGGGAGGCGTCGCGCTCGTCTTCACCGACGAGGACGTCACCGTCGAAGGCTTCTGCAGCAGCCGGTGCGACAAGCACGGCTCGGACGCGAGCGCCGGCACCACCCACATCTGGGTCGGCAACTCTGCGAAGCAGTGCCCGGGGCAGTGCGCGTGGCCGTTCGCGCAGCCGGTGTACGGGCCACAGGGCACGCCGCTGGTGGCGCCCAACAACGACGTCGGCGCGGACGGGATGGTGATGATCCTCGCCTCGATGGTGGCCGGCACGGTGACCAACCCGTACGG CGATGGGTTCTACCAGGGGCCCCAGGACGCGCCGCTGGAGGCGTGCTCGGCGTG CGGGGAGTCTACGGCAGCGGCGCGTACCCGGGGAACGCCGGTAAACTCCTCGTCGACGCCACCACCGGAGCCAGCTACAACGCCAACGGCGCGAACAGGAGGAAGTACCTGCTCCCGGCGTTGTACAATCCCGCAACGTCCTCCTGCGACACGCTTGTGTAATCCATAGTGCCGGACACGTTACGTGTTCTGTACCTGTACGCTTGGGAAGTTGTACATACGAGTTGGGAAAGTAATGGAATCACTT ]
[+] EMBL AK063454 [ AAGCAAACACAATTACACGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTGAGCCTCGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTGACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGACTTCGTCGTCTCGCTCACCGGCGCGCCGAACGCGGCCACGCCGTCGGTCGGGCAGTGGTGGGGCACCATCGAACAGCTCTACCTGTCCAACGCCGCCACGAACAGCCAGACCTCCACACGCGTGCTCCTCGATGAGCAGGTCTCGGACGAGCAGTGCTCCCTCGGCAAGTCTCTCACCCTGGCTCAGATCGACCAGCTCGCCGCGCGCGTCGGCACCAAGAGGGGAGGCGTCGCGCTCGTCTTCACCGACGAGGACGTCACCGTCGAAGGCTTCTGCAGCAGCCGGTGCGGCAAGCACGGCTCGGACGCGAGCGCCGGCACCACCCACATCTGGGTCGGCAACTCTGCGAAGCAGTGCCCGGGGCAGTGCGCGTGGCCGTTCGCGCAGCCGGTGTACGGGCCACAGGGCACGCCGCTGGTGGCGCCCAACAACGACGTCGGCGCGGACGGGATGGTGATGATCCTCGCCTCGATGGTGGCCGGCACGGTGACCAACCCGTACGG CGATGGGTTCTACCAGGGGCCCCAGGACGCGCCGCTGGAGGCGTGCTCGGCGTGCCCGGGAGTCTACGGCAGCGGCGCGTACCCGGGGAACGCCGGTAAACTCCTCGTCGACGCCACCACCGGAGCCAGCTACAACGCCAACGGCGCGAACAGGAGGAAGTACCTGCTCCCGGCGTTGTACAATCCCGCAACGTCCTCCTGCGACACGCTTGTGTAATCCATAGTGCCGGACACGTTACGTGTTCTGTACCTGTACGCTTGGGAAGTTGTACATACGAGTTGGGAAAGTAATGGAATCACTT ]
[+] EMBL AU100630 [ CCGACGAGGACGTCACCGTCGAAGGCTTCTGCAGCAGCCGGTGCGGCAAGCACGGCTCGGACGCGAGCGCCGGCACCACCNACATCTGGGTCGGNAACTCTGCGAAGCAGTGCCCGGGGCAGTGCGCGTGGCCGTTCGCGCAGCCGGTNTACGGGCCACAGGGCACGCCGCTGGTGGCGCCCAACAACGACGTCGGCGCGGACGGGATGGTGATGATCCTCGCCTCGATGGTGNCCGGCACGGTGACCAACCCGTACGG CGATGGGTTCTACCAGGGGCCCCAGGACGCGCCGCTGGAGGCGTGCTCGGCGTGCCCGGGAGTCTACGGCAGCGGCGCGTACCCGGGGAACGCCGGTAAACTCCTCGTCGACGCCACCACCGGAGCCAGCTACAACGCCAACGGCGCGAACAGGAGGAAGTACCTGCTCCCGGCGTTGTACAATCCCGCAACGTCCTCCTGCGACACGCTTGTGTAATCCATAGTGCCGGACACGTTACGTGTTCTGTACCTGTACGCTTGGGAAGTTGTACATACGAGTTGGGAAAGTAATGGAATCACTTTGTTCGTTCTAAAAAAA ]
[+] EMBL C98256 [ CCGTTNCGGAAAGCACGGNTCGGACGCGA CGCCGGCACCACCCACATNTGGTTCGGCAACT TGCGAAGCAGTGCCCGGGNCAGTGCGCGTGGCCGTTCGCGCAGCCGGTGTACGGGCCACAGGGCACGCCGCTGGTGGCGCCCAACAACGACGTCGGCGCGGACGGGATGGTGATGATCCTCGCCTCGATGGTGGCCGGCACGGTGACCAACCCGTACGG CGATGGGTTCTACCAGGGGCCCCAGGACGCGCCGCTGGAGGCGTGCTCGGCGTGCCCGGGAGTCTACGGCAGCGGCGCGTACCCGGGGAACGCCGGTAAACTCCTCGTCGACGCCACCACCGGAGCCAGCTACAACGCCAACGGCGCGAACAGGAGGAAGTACCTGCTCCCGGCGTTGTACAATCCCGCAACGTCCTCCTGCGACACGCTTGTGTAATCCATAGTGCCGGACACGTTACGTGTTCTGTACCTGTACGCTTGGGAAGTTGTACATACGAGTTGGGAAAGTAATGGAATCACTTTGTTCGTTCTAAAAAA ]
[+] EMBL C98095 [ ACCCANATCTGGGTCGGCAACTTTGCGAAGCAGTGCCCGGGGCAGTGCGCGTGGCCGTTCGCGCAGCCGGTGTACGGGCCACAGGGCACGCCGNTGGTGGCGCCCAACAACGACGTCGGCGCGGACGGGATGGTGATGATCCTCGCCTCGATGGTGGCCGGCACGGTGACCAACCCGTACGG CGATGGGTTCTACCAGGGGCCCCAGGACGCGCCGCTGGAGGCGTGCTCGGCGTGCCCGGGAGTCTACGGCAGCGGCGCGTACCCGGGGAACGCCGGTAAACTCCTCGTCGACGCCACCACCGGAGCCAGCTACAACGCCAACGGCGCGAACAGGAGGAAGTACCTGCTCCCGGCGTTGTACAATCCCGCAACGTCCTCCTGCGACACGCTTGTGTAATCCATAGTGCCGGACACGTTACGTGTTCTGTACCTGTACGCTTGGGAAGTTGTACATACGAGTTGGGAAAGTAATGGAATCACTTTGTTCGTTCTAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU108769 [ ACGGGATGGTGATGATCCTCGCCTCGATGGTGGCCGGCACGGTGACCAACCCNTACGGCCGATGGGTTCTACCAGGGGCCCCAGGACGCGCCGCTGGAGGCGTGCTCGGCGTGCCCGGGAGTCTACGGCAGCGGCGCGTACCCGGGGAACGCCGGTAAACTCCTCGTCGACGCCACCACCGGAGCCAGCTACAACGCCAACGGCGCGAACAGGAGGAAGTACCTGCTCCCGGCGTTGTACAATCCCGCAACGTCCTCCTGCGACACGCTTGTGTAATCCATAGTGCCGGACACGTTACGTGTTCTGTACCTGTACGCTTGGGAAGTTGTACATACGAGTTGGGAAAGTAATGGAATCACTTTGTTCGTTCTAAAAA ]
[-] EMBL CA757964 [ CCCGCAACGTCCTCCTGCGACACGCTTGTGTAATCCATAGTGCCGGACACGTTACGTGTTCTGTACCTGTACGCTTGGGAAGTTGTACATACGAGTTGGGAAAGTAATGGAATCACTTTGTTCGTTTTAAAAAAAAAAAAAAAAAAAAAACTCGAGACT]
[-] EMBL CA757462 [ CCCGCAACGTCCTCCTGCGACACGCTTGTGTAATCCATAGTGCCGGACACGTTACGTGTTCTGTACCTGTACGCTTGGGAAGTTGTACATACGAGTTGGGAAAGTAATGGAATCACTTTGTTCGTTCTAAAAAAAAAAAAAAAAAAAAAACTCGAGACT]
consensusID : consensus_15171#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1091 fasta sequence
[GAAGCAAACACAATTACACGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTGAGCCTCGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTGACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGAC-TTCGTCGTC-TCGCTCACCGGCGCGCCGAACGCGGCCACGCCG-TCGGTCGGGCAGTGGTGGGGCACCATCGAACAGCTCTACCTGTCC-AACGCCGCCACGAACAGCCAGACCTCCACACGCGTGCTCCTCGATGAGCAGGTCTCGGACGAGCAGTGCTCCCTCGGCAAGTCTCTCACCCTGGCTCAGATCGACCAGCTCGCCGCGCGCGTCGGCACCAAGA-GGGGAGGCGTCGCGCTCGTCTTCACCGACGAGGACGTCACCGTCGAAGGCTTCTGCAGCAGCCGGTGCGGCAAGCACGGCTCGGACGCGAGCGCCGGCACCACCCACATCTGGGTCGGCAACTCTGCGAAGCAGTGCCCGGGGCAGTGCGCGTGGCCGTTCGCGCAGCCGGTGTACGGGCCACAGGGCACGCCGCTGGTGGCGCCCAACAACGACGTCGGCGCGGACGGGATGGTGATGATCCTCGCCTCGATGGTGGCCGGCACGGTGACCAACCCGTACGGCGATGGGTTCTACCAGGGGCCCCAGGACGCGCCGCTGGAGGCGTGCTCGGCGTGCCCGGGAGTCTACGGCAGCGGCGCGTACCCGGGGAACGCCGGTAAACTCCTCGTCGACGCCACCACCGGAGCCAGCTACAACGCCAACGGCGCGAACAGGAGGAAGTACAATCCCGCAACGTCCTCCTGCGACACGCTTGTGTAATCCATAGTGCCGGACACGTTACGTGTTCTGTACCTGTACGCTTGGGAAGTTGTACATACGAGTTGGGAAAGTAATGGAATCACTT]
[+] EMBL AK119695 [GAAGCAAACACAATTACACGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTGAGCCTCGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTGACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGAC TTCGTCGTC TCGCTCACCGGCGCGCCGAACGCGGCCACGCCG TCGGTCGGGCAGTGGTGGGGCACCATCGAACAGCTCTACCTGTCC AACGCCGCCACGAACAGCCAGACCTCCACACGCGTGCTCCTCGATGAGCAGGTCTCGGACGAGCAGTGCTCCCTCGGCAAGTCTCTCACCCTGGCTCAGATCGACCAGCTCGCCGCGCGCGTCGGCACCAAGA GGGGAGGCGTCGCGCTCGTCTTCACCGACGAGGACGTCACCGTCGAAGGCTTCTGCAGCAGCCGGTGCGGCAAGCACGGCTCGGACGCGAGCGCCGGCACCACCCACATCTGGGTCGGCAACTCTGCGAAGCAGTGCCCGGGGCAGTGCGCGTGGCCGTTCGCGCAGCCGGTGTACGGGCCACAGGGCACGCCGCTGGTGGCGCCCAACAACGACGTCGGCGCGGACGGGATGGTGATGATCCTCGCCTCGATGGTGGCCGGCACGGTGACCAACCCGTACGGCGATGGGTTCTACCAGGGGCCCCAGGACGCGCCGCTGGAGGCGTGCTCGGCGTGCCCGGGAGTCTACGGCAGCGGCGCGTACCCGGGGAACGCCGGTAAACTCCTCGTCGACGCCACCACCGGAGCCAGCTACAACGCCAACGGCGCGAACAGGAGGAAGTACAATCCCGCAACGTCCTCCTGCGACACGCTTGTGTAATCCATAGTGCCGGACACGTTACGTGTTCTGTACCTGTACGCTTGGGAAGTTGTACATACGAGTTGGGAAAGTAATGGAATCACTT]
[+] EMBL AU062414 [ ACACAATTACACGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTGAGCCTCGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTGACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGAC TTCGTCGTC TCGCTCACCGGCGCGCCGAACGCGGCCACGCCGTTCGGTCGGGCAGTG ]
[+] EMBL AU062541 [ ACACAATTACACGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTGAGCCTCGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTGACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTNGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGAC TTCGTgt ]
[+] EMBL C27414 [ ccgCACAATTACACGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCG GATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTGAGCCTCGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTGACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGGCGACGCAGATGTCGATCATCGCCGACTTTCGTGGTCTTCGCTCACNGGCG ]
[+] EMBL OS0679A [ AATTACACGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTGAGCCTCGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTNACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGAC TTCGTCGTC TCGCTCACCGGCG ]
[+] EMBL AU063449 [ ACGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTGAGCCTCGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGNCGAGTGACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGNCGACGCAGATG ]
[+] EMBL C28495 [ CGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATNATAGCGGCGGTGTCTCTGAGCCTNGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTGACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGAC TTCGTCGTC TCGCTCANCGGCGCGCCGAACGGGGCCACGCCG TCGGTCGGGCAGTTGTNGGGCACCATNGAACAGCTCTACCTGTCCAAAGGCCGCCACGNACAGC ]
[+] EMBL CF325642 [ GACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTGAGCCTCGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTGACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGAC TTCGTCGTC TCGCTCACCGGCGCGCCGAACGCGGCCACGCCG TCGGTCGGGCAGTGGTGGGGCACCATCGAACAGCTCTACCTGTCC AACGCCGCCACGAACAGCCAGACCTCCACACGCGTGCTCCTCGATGAGCAGGTCTCGGACGAGCAGTGCTCCCTCGGCAAGTCTCTCACCCTGGCTCAGATCGACCAGCTCGCCGCGCGCGTCGGCACCAAGAGGGGGAGGCGTCGCGCTCGTCTTCACCGACG ]
[+] EMBL C27104 [ GACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTGAGCCTNGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTGACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGAC TTCGTNGTC TCGCTCANCGGCGCGCCGAACGNGGCCACGCCG TCGGTCGGGCAGTNGTGGGGCACCATCGAACAGCTCTACCTGTCC AACGCCG CACG ACAG ]
[+] EMBL OSC13391 [ GCAGATNTCGATCATCGCCGAC TTCGTCGTC TCGNTCACCGGCGCGCCGAACGCGGCCACGCNN TCGGTCGGGCAGTGGTGGGGCACCATCGAACAGCTCTACCTNTCC AACGTCGCCACGAACAGCCAGACCTCCACACGCGTGCTCCTCGATGAGCAGGTCTCGGACGAGCAGTGCTCCCTCGGCAAGTNTCTCACCCTGGCTCAGATCGACCAGCTCGCNGCGCGCNTCGGCACCAAGA GGGGAGG ]
consensusID : consensus_15171#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[ACGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTNAGCCTNGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTNACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGACTTCGTCGTCTCGCTCACCGGCGCGCCGAACGGGGCCACGCCGTCGGTCGGGCAATTGTGGGGCACCATCGAACAGCTCTACCTGTCCAACGCCGCACGAACAGCAGACCTCCACAGNGTNCTTCTCGATGAGAAGTNTTGGACGAGCANTCTTCCTCGGCAAATTTTTAACCTGGTNAAATTGACCAGTTGCGGGGNTTGGACCAAA]
[+] EMBL AU063453 [ACGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTNAGCCTNGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTNACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGACTTCGTCGTCTCGCTCACCGGCGCGCCGAACGGGGCCACGCCGTCGGTCGGGCAATTGTGGGGCACCATCGAACAGCTCTACCTGTCCAACGCCGCACGAACAGCAGACCTCCACAGNGTNCTTCTCGATGAGAAGTNTTGGACGAGCANTCTTCCTCGGCAAATTTTTAACCTGGTNAAATTGACCAGTTGCGGGGNTTGGACCAAA]
consensusID : consensus_15171#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[CCCGGGCAAGTGCGCGTGCCCGTTCGCCAGCCGTGTACGGCCCACAGGCACCCGCTGGTGGCGCCCAACAACGACGTCGGCCGAACGGAATGTNATAANCCTCCCCCTCGATGGTGCCGGCACGGTGACACAACCCGTACGGCGATGGGTTCTACACAGGGGCCCCAGACGCGCCGCTGGAGGCGTGCTCGGCGTGCCCGGGAGTCTACGCAGCGGCGCGTACCCGGGGAACGCCCGGTAAACTCCTCGTTCGACGCCACCCACCGGAGCCAGGCTACCAACCCCCACCGGGCGCGAAACAAGAAGGAAACNAACCCGCTCCCGCTGTACCATTCCCCACGTCCTCTGCGAACACGCTGTGAACCATANGCCGACACTACCNGGTGGGACCCGNACNCTGGGAANTGANAATACGAAGTGGGAAAGTAAGGAANNACTTGTCCGTTN]
[+] EMBL BI806035 [CCCGGGCAAGTGCGCGTGCCCGTTCGCCAGCCGTGTACGGCCCACAGGCACCCGCTGGTGGCGCCCAACAACGACGTCGGCCGAACGGAATGTNATAANCCTCCCCCTCGATGGTGCCGGCACGGTGACACAACCCGTACGGCGATGGGTTCTACACAGGGGCCCCAGACGCGCCGCTGGAGGCGTGCTCGGCGTGCCCGGGAGTCTACGCAGCGGCGCGTACCCGGGGAACGCCCGGTAAACTCCTCGTTCGACGCCACCCACCGGAGCCAGGCTACCAACCCCCACCGGGCGCGAAACAAGAAGGAAACNAACCCGCTCCCGCTGTACCATTCCCCACGTCCTCTGCGAACACGCTGTGAACCATANGCCGACACTACCNGGTGGGACCCGNACNCTGGGAANTGANAATACGAAGTGGGAAAGTAAGGAANNACTTGTCCGTTN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15171#0 GGAAGCAAACACAATTACACGACGAGCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCC 60
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 ------------------------------------------------------------
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 CACGAGTGCTCCATTTTGGCCGTGCGATATCGCGATCAATGGCTTCGTTTAGGCTAATGA 120
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 ------------------------------------------------------------
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 TAGCGGCGGTGTCTCTGAGCCTCGTGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGT 180
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 ------------------------------------------------------------
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 TGTACATACCTCCGGCGAGTGACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCG 240
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 ------------------------------------------------------------
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 ACATCCCGGTGTCCATCCTCTGGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCG 300
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 ------------------------------------------------------------
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 CCGACTTCGTCGTCTCGCTCACCGGCGCGCCGAACGCGGCCACGCCGTCGGTCGGGCAGT 360
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 ------------------------------------------------------------
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 GGTGGGGCACCATCGAACAGCTCTACCTGTCCAACGCCGCCACGAACAGCCAGACCTCCA 420
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 ------------------------------------------------------------
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 CACGCGTGCTCCTCGATGAGCAGGTCTCGGACGAACAGTGCTCCCTCGGCAAGTCTCTCA 480
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 ------------------------------------------------------------
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 CCCTGGCTCAGATCGACCAGCTCGCCGCGCGCGTCGGCACCAAGAGGGGAGGCGTCGCGC 540
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 ------------------------------------------------------------
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 TCGTCTTCACCGACGAGGACGTCACCGTCGAAGGCTTCTGCAGCAGCCGGTGCGGCAAGC 600
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 ------------------------------------------------------------
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 ACGGCTCGGACGCGAGCGCCGGCACCACCCACATCTGGGTCGGCAACTCTGCGAAGCAGT 660
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 ------------------------------------GAAGCAAACACAATTACACGACGA 24
consensus_15171#2 -----------------------------------------------------ACGACGA 7
consensus_15171#0 GCCCGGGGC---AGTG-CGCGTGGCCGTTCGCGCAGCCGGTGTACGGGCCACAGGGCACG 716
consensus_15171#3 -CCCGGGCA---AGTG-CGCGTGCCCGTTCGC-CAGCCG-TGTACGGCCCACAGG-CAC- 51
consensus_15171#1 GCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACG-AGTGCTCCATTTTGGCCGTG 83
consensus_15171#2 GCTCGATCATCAAGTGGCTCTAGCTAGCTCGATCCCACG-AGTGCTCCATTTTGGCCGTG 66
* ** **** * * * * *** * ** ** * ** *
consensus_15171#0 CCGCTGGTGGCGCCCAACAACGACGTCGGCGCGGACGG-GATGGTGATGATCCTCGCC-T 774
consensus_15171#3 CCGCTGGTGGCGCCCAACAACGACGTCGGC-CGAACGG-AATG-TNATAANCCTCCCCCT 108
consensus_15171#1 CGAT--ATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTGAGCCT 141
consensus_15171#2 CGAT--ATCGCGATCAATGGCTTCGTTTAGGCTAATGATAGCGGCGGTGTCTCTNAGCCT 124
* * *** *** * *** * * * * * ** * *
consensus_15171#0 CGATGGTGGCCGGCACGGTGA-C-CAACCCGTACGGCGATGGGT---TCTAC-CAGGGGC 828
consensus_15171#3 CGATGGTG-CCGGCACGGTGA-CACAACCCGTACGGCGATGGGT---TCTACACAGGGGC 163
consensus_15171#1 CG-TGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTG 200
consensus_15171#2 NG-TGCAGCTCTCCATGGGGAGCAGGAGGTTAATGGAGCTGTACATACCTCCGGCGAGTN 183
* ** * * ** ** ** * * * ** * ** ** * * *
consensus_15171#0 CCCAGG--ACGCGCCGCT--GGAGGCGTGCTCGGCG----TGCCCGGGAGTCTA--CGGC 878
consensus_15171#3 CCCAG---ACGCGCCGCT--GGAGGCGTGCTCGGCG----TGCCCGGGAGTCTA--CG-C 211
consensus_15171#1 ACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCT 260
consensus_15171#2 ACCAGCTCACGTACCACCACGGCAGCGTGCTCAGTGGCGACATCCCGGTGTCCATCCTCT 243
**** *** ** * ** ******** * * ** ** *** * *
consensus_15171#0 AGCGGCGCGTACCCGGGG-AACGC-----C-GGTAAACTCCTCGT-CGACGCC--ACC-A 927
consensus_15171#3 AGCGGCGCGTACCCGGGG-AACGC-----CCGGTAAACTCCTCGTTCGACGCC--ACCCA 263
consensus_15171#1 GGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGACTTCGTCGTCTCGCTCA 320
consensus_15171#2 GGTACGGCAAATTCACGCCGACGCAGATGTCGATCATCGCCGACTTCGTCGTCTCGCTCA 303
* ** * * * **** * * * * ** * ** ** * * *
consensus_15171#0 CCGGAGC--CAG-CTAC-AACGCCAAC--GGCGCGAA-CAGGAGGAAG--TACCTGCTCC 978
consensus_15171#3 CCGGAGC--CAGGCTACCAACCCCCACCGGGCGCGAAACAAGAAGGAA--ACNAACCCGC 319
consensus_15171#1 CCGGCGCGCCGAACGCGGCCACGCCGTCGGTCGGGCAGTGGTGGGGCACCATCGAACAGC 380
consensus_15171#2 CCGGCGCGCCGAACGGGGCCACGCCGTCGGTCGGGCAATTGTGGGGCACCATCGAACAGC 363
**** ** * * * * ** * * * * *
consensus_15171#0 CGGCGTTGTACAATCCCGCAACGTCCTCCTGCGACAC-GCTTGTGTAATCCATAGTGCCG 1037
consensus_15171#3 TCCCGCTGTACCATTCCCCA-CGTCCTCTGCGAACAC-GC---TGTGAACCATAN-GCCG 373
consensus_15171#1 TCTACCTGTCCAACGCCGCCACGAACAGCCAGACCTCCACACGCGTGCTCCTCGATGAGC 440
consensus_15171#2 TCTACCTGTCCAACGCCGC-ACGAACAGC-AGACCTCCACA-GNGTNCTTCTCGATGAG- 419
*** * * ** * ** * * * * ** * *
consensus_15171#0 GACACGTTACGTGTTCTGTACCTGTACGCTTGGGAAGTTGTACATA-----CGAGTTGGG 1092
consensus_15171#3 ---ACACTACCNGGTG-GGACCCGNACNCT--GGGAANTGANAATA-----CGAAGTGGG 422
consensus_15171#1 ----AGGTCTCGGACGAGCAGTG-CTCCCTCGGCAAGTCTCTCACCCTGGCTCAGATCGA 495
consensus_15171#2 ----AAGTNTTGGACGAGCANT--CTTCCTCGGCAAATTTTTAACCTGG--TNAAATTGA 471
* * * * ** * * * * * *
consensus_15171#0 AAAGTAAT-GGAATCACTTTGTTCGTTCTAAAAAAAAAAAAAAAAAAAAAACTCGAGACT 1151
consensus_15171#3 AAAGTAA--GGAANNACTT-GTCCGTTN-------------------------------- 447
consensus_15171#1 CCAGCTCGCCGCGCGCGTCGGCACCAAGAGGGGAGGCGTCGCGCTCGTCTTCACCGACGA 555
consensus_15171#2 CCAGTT----GCGGGGNTTGG-ACCAAA-------------------------------- 494
** * * * *
consensus_15171#0 ------------------------------------------------------------
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 GGACGTCACCGTCGAAGGCTTCTGCAGCAGCCGGTGCGGCAAGCACGGCTCGGACGCGAG 615
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 ------------------------------------------------------------
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 CGCCGGCACCACCCACATCTGGGTCGGCAACTCTGCGAAGCAGTGCCCGGGGCAGTGCGC 675
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 ------------------------------------------------------------
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 GTGGCCGTTCGCGCAGCCGGTGTACGGGCCACAGGGCACGCCGCTGGTGGCGCCCAACAA 735
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 ------------------------------------------------------------
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 CGACGTCGGCGCGGACGGGATGGTGATGATCCTCGCCTCGATGGTGGCCGGCACGGTGAC 795
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 ------------------------------------------------------------
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 CAACCCGTACGGCGATGGGTTCTACCAGGGGCCCCAGGACGCGCCGCTGGAGGCGTGCTC 855
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 ------------------------------------------------------------
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 GGCGTGCCCGGGAGTCTACGGCAGCGGCGCGTACCCGGGGAACGCCGGTAAACTCCTCGT 915
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 ------------------------------------------------------------
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 CGACGCCACCACCGGAGCCAGCTACAACGCCAACGGCGCGAACAGGAGGAAGTACAATCC 975
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 ------------------------------------------------------------
consensus_15171#3 ------------------------------------------------------------
consensus_15171#1 CGCAACGTCCTCCTGCGACACGCTTGTGTAATCCATAGTGCCGGACACGTTACGTGTTCT 1035
consensus_15171#2 ------------------------------------------------------------
consensus_15171#0 --------------------------------------------------------
consensus_15171#3 --------------------------------------------------------
consensus_15171#1 GTACCTGTACGCTTGGGAAGTTGTACATACGAGTTGGGAAAGTAATGGAATCACTT 1091
consensus_15171#2 --------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||