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Oryza sativa
cluster # 15174 cluster # 15174       Sequences # 20       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15174#0 length = 1261 sequences # 17  
consensus_15174#1 length = 267 sequences # 1  
consensus_15174#2 length = 168 sequences # 2  

consensusID : consensus_15174#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 1261
fasta sequence
                              [TTCGCCAGTTCAGCTCGCCATTTCGCCATGGCCCCCGCCGCCGCATCATCGTCCGCGCTGCTCCCCGCGGGGACCTTCTCCACCGCCCGCCCCGTCGCGGGCCGGCCCGCCGGCCAGCGCCTTCCCACGAGGGTAGCCGCCGCGAGCAGGACGACGACGGCGCGTTCTCCTGCCGCCTGCCTCTCCGTCGGGGGCAGGAGGCGGGGAGCGGAGGCCGTCCGCGCGTCCGCGGGGGGAGCGCCGGCCGCGTCCCTCCCGGCGGCGCTGCTGTTCGACTGCGACGGCGTGCTGGTGGACACGGAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGCCGAGAGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAGATAGGTGGCGGAAAGGAAAGGATGACAGCGTATTTCAGCAAAATGGGGTGGCCAGCTAAAGCACCAAAGACTGACGACGAAAGAAAGGAGTTTATTGCTTCGCTGCACAAGAGGAAAACAGAATTATTCATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGGTTAATAGATGAAGCCCTA-GGAA-AAGGAGTGAAAGTTGCAGTATGCAGTACTTCA-AATGAGAAAGCTGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAG-AAA-AAATTACCATATTTGCTGGAGATGT-GGTTCCTCGT-AAAAAACCTGATCCA-GCAATC-TACTT-ACTTGCA-GCAACCACACTTGGAGTCGATCCATCTAGTTGTG-TTGTTGT-TGAAGACAGTACTA-TA-GGGCTTGCAGCAGCCAAAG-CTGCTGGTATGAAGTGTATCGT-AACAAAAAGCGGA-TACACTGCAGAA-GAGGACTTTGC-AACAGCTGATGCTGTGTTCGATTGCATTGGT-GACCCTCCAGA-AGTACGCTTTGATTTGGAGTTCTGCGCCAACCTCCTCCAGAAACAATTTGTAAGCTGAAGGAGCAGACGGTCAATTTCACCCATATCATATAAATTCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGGTCT-CTATAAAATCATTCCAAATACAAGAGTCAAGAGGAACAGCATTGCTTTATATACTAT-TGATATTTGTTATTTATGTATAGAGGAGTACATATATGAACATAAT-AGAATAAGAAATCGAAATATCTTTAATTGAAATTTGTTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK065884             [TTCGCCAGTTCAGCTCGCCATTTCGCCATGGCCCCCGCCGCCGCATCATCGTCCGCGCTGCTCCCCGCGGGGACCTTCTCCACCGCCCGCCCCGTCGCGGGCCGGCCCGCCGGCCAGCGCCTTCCCACGAGGGTAGCCGCCGCGAGCAGGACGACGACGGCGCGTTCTCCTGCCGCCTGCCTCTCCGTCGGGGGCAGGAGGCGGGGAGCGGAGGCCGTCCGCGCGTCCGCGGGGGGAGCGCCGGCCGCGTCCCTCCCGGCGGCGCTGCTGTTCGACTGCGACGGCGTGCTGGTGGACACGGAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGCCGAGAGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAGATAGGTGGCGGAAAGGAAAGGATGACAGCGTATTTCAGCAAAATGGGGTGGCCAGCTAAAGCACCAAAGACTGACGACGAAAGAAAGGAGTTTATTGCTTCGCTGCACAAGAGGAAAACAGAATTATTCATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGGTTAATAGATGAAGCCATA GGAA AAGGAGTGAAAGTTGCAGTATGCAGTACTTCA AATGAGAAAGCTGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAG AAA AAATTACCATATTTGCTGGAGATGT GGTTCCTCGT AAAAAACCTGATCCA GCAATC TACTT ACTTGCA GCAACCACACTTGGAGTCGATCCATCTAGTTGTG TTGTTGT TGAAGACAGTACTA TA GGGCTTGCAGCAGCCAAAG CTGCTGGTATGAAGTGTATCGT AACAAAAAGCGGA TACACTGCAGAA GAGGACTTTGC AACAGCTGATGCTGTGTTCGATTGCATTGGT GACCCTCCAGA AGTACGCTTTGATTTGGAGTTCTGCGCCAACCTCCTCCAGAAACAATTTGTAAGCTGAAGGAGCAGACGGTCAATTTCACCCATATCATATAAATTCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGGTCT CTATAAAATCATTCCAAATACAAGAGTCAAGAGGAACAGCATTGCTTTATATACTAT TGATATTTGTTATTTATGTATAGAGGAGTACATATATGAACATAAT AGAATAAGAAATCGAAATATCTTTAATTGAA                                                         ]
[+] EMBL CB653709             [        TTCAGCCCCCCATTTCGCCATGGCCCCCGCCGCCGCATCATCGTCCGCGCTGCTCCCCGCGGGGACCTTCTCCACCGCCCGCCCCGTCGCGGGCCGGCCCGCCGGCCAGCGCCTTCCCACGAGGGTAGCCGCCGCGAGCAGGACGACGACGGCGCGTTCTCCTGCCGCCTGCCTCTCCGTCGGGGGCAGGAGGCGGGGAGCGGAGGCCGTCCGCGCGTCCGCGGGGGGAGCGCCGGCCGCGTCCCTCCCGGCGGCGCTGCTGTTCGACTGCGACGGCGTGCTGGTGGACACGGAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGCCGAGAGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAGATAGGTGGCGGAAAGGAAAGGATGACAGCGTATTTCAGCAAAATGGGGTGGCCAGCTAAAGCACCAAAGACTGACGACGAAAGAAAGGAGTTTATTGCTTCGCTGCACAAGAGGAAAACAGAATTATTCATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGGTTAATAGATGAAGCCCTA GGAA AAGGAGTGAAAGTTGCAGTATGCAGTACTTCA AATGAGAAAGCTGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAG AAA AAATTACCATATTTGCTGGAGATGT GGTTCCTCGTAAAAAAACCTGATCCA GCAATC TACTT ACTTGCA GCAACCACACTTGGAGTCGATCCATCTAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU166931             [                                 CCCGCCGCCGNATCATCGTCCGCGCTGCTCCCCGCGGGGACCTTCTCCACCGCCCGCCCCGTCGCGGGCCGGCCCGCCGGCCAGCGCCTTCCCACGAGGGTAGCCGCCGCGAGCAGGACGACGACGGCGCGTTCTCCTGCCGCCTGCCTCTCCGTCGGGGGCAGGAGGCGGGGAGCGGAGGCCGTCCGCGCGTCCGCGGGGGGAGCGCCGGCCGCGTCCCTCCCGGCGGCGCTGCTGTTCGACTGCGACGGCGTGCTGGTGGACACGGAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGCCGAGAGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAGATAGGTGGCGGAAAGGAAAGGATGACAGCGTATTTCAGCAAAATGGGGTGGCCAGCTAAAGCACCAAAGACTGACGACGAAAGAAAGGAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF312613             [                                                                                                                                                                                                                                                                                                                                                                                                                                                    AAATGGGGTGGCCAGCTAAAGCACCAAAGACTGACGACGAAAGAAAGGAGTTTATTGCTTCGCTGCACAAGAGGAAAACAGAATTATTCATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGGTTAATAGATGAAGCCCTA GGAA AAGGAGTGAAAGTTGCAGTATGCAGTACTTCA AATGAGAAAGCTGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAG AAA AAATTACCATATTTGCTGGAGATGT GGTTCCTCGT AAAAAACCTGATCCA GCAATC TACTT ACTTGCA GCAACCACACTTGGAGTCGATCCATCTAGTTGTG TTGTTGT TGAAGACAGTACTA TA GGGCTTGCAGCAGCCAAAG CTGCTGGTATGAAGTGTATCGT AACAAAAAGCGGA T                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB630480             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGGGTGGCCAGGTAAAGCACCAAAGACTGACGACGAAAGAAAGGAGTTTATTGCTTCGCTGCACAAGAGGGAAACAGAATTATTCATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGGTTAATAGATGAAGCCCTA GGAA AAGGAGTGAAAGTTGCAGTATGCAGTACTTCA AATGAGAAAGCTGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAG AAA AAATTACCATATTTGCTGGAGATGT GGTTCCTTGT AAAAAACCTGATCCA GCAATC TACTT ACTTGCA GCAACCACACTTGGAGTCGATCCATCTAGTTGTG TTGTTGT TGAAGACAGTACTA TA GGGCTTGCAGCAGCCAAAG CTGCTGGTATGAAGTGTATCGT AACAAAAAGCGGA TACACTGCAGAA GAGGACTTTGC AACAGCTGATGCTGTGTTCGATTGCATTGGT GACCCTCCAGA AGTACGCTTTGATTTGGAGTTTTGCGCCAACCTCCTCCAGAAACAATTTGTAAGCTGAAGGAGCAGACGGTCAATTTCACCCATATCATATAAA TCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGGTCT CTATAAAATCATTCCAAATACAAGAGTCAAGAGGAACAGCATTGCTCTATATACTAT TGATATTTGTTATTTATGTATAGAGGAGTACATATTTAAAGATAAT AGAATAAGAAAT                                                                            ]
[+] EMBL CA754131             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTATTGCTTCGCTGCACAAGAGGAAAACAGAATTATTCATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGGTTAATAGATGAAGCCCTA GGAA AAGGAGTGAAAGTTGCAGTATGCAGTACTTCA AATGAGAAAGCTGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAA AAATTACCATATTTGCTGGAGATGT GGTTCCTCGT AAAAAACCTGATCCA GCAATC TACTT ACTTGCA GCAACCACACTTGGAGTCGATCCATCTAGTTGTG TTGTTGT TGAAGACAGTACTA TA GGGCTTGCAGCAGCCAAAG CTGCTGGTATGAAGTGTATCGT AACAAAAAGCGGA TACACTGCAGAA GAGGACTTTGC AACAGCTGATGCTGTGTTCGATTGCATTGGT GACCCTCCAGA AGTACGCTTTGATTTGGAGTTCTGCGCCAACCTCCTCCAGAAAAAATTTGTAAGCTGAAGGAGCAGACGGTCAATTTCACCCATATCATATAAATTCTATAAATTCTTGCCCAGGATGATGGAAAGCGGGAATGGTCTCCTAT AAATCATTCCCAATAC                                                                                                                                                                            ]
[-] EMBL CB653710             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACAAGAGGAAAACAGAATTATTCATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGGTTAATAGATGAAGCCCTA GGAA AAGGAGTGAAAGTTGCAGTATGCAGTACTTCA AATGAGAAAGCTGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAG AAA AAATTACCATATTTGCTGGAGATGT GGTTCCTCGTAAAAAAACCTGATCCA GCAATC TACTT ACTTGCA GCAACCACACTTGGAGTCGATCCATCTAGTTGTG TTGTTGT TGAAGACAGTACTA TA GGGCTTGCAGCAGCCAAAG CTGCTGGTATGAAGTGTATCGT AACAAAAAGCGGA TACACTGCAGAA GAGGACTTTGC AACAGCTGATGCTGTGTTCGATTGCATTGGT GACCCTCCAGA AGTACGCTTTGATTTGGAGTTCTGCGCCAACCTCCTCCAGAAACAATTTGTAAGCTGAAGGAGCAGACGGTCAATTTCACCCATATCATATAAATTCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGGTCT CTATAAAATCATTCCAAATACAAGAGTCAAGAGGAACAGCATTGCTTTATATACTAT TGATATTTGTTATTTATGTATAGAGGAGTACATATATGAACATAAT AGAATAAGGAATCGAAATATCTTTAATTGAAATTTGTTACTAAAAAAAgga                                     ]
[+] EMBL BQ907180             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGGTTAATAGATGAAGCCCTANGGAATAAGGAGTGAAAGTTGCAGTATGCAGTACTTCACAATGAGAAAGCTGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAG AAATAAATTACCATATTTGCTGGAGATGT GGTTCCTCGT AAAAAACCTGATCCA GCAATC TACTT ACTTGCA GCAACCACACTTGGAGTCGATCCATCTAGTTGTGCTTGTTGTNTGAAGACAGTACTACTACGGGCTTGCAGCAGCCAAAGCCTGCTGGTATGAAGTGTATCGT AACAAAAAGCGGACTACACTGCAGAACGAGGACTTTGCNNACAGCTGATGCTGTGTTCGATTGCATTGGTGGACCCTCCAGA AGTACGCTTTGATTTGGAGTTCTGCGCCAACCTCCTCCAGAAACAATTTGTAAGCTGAAGGAGCAGACGGTCAATTTCACCCATATCATATAAATTCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGGTCT CTATAAAATCATTCCAAATACAAGAGTCAAGAGGCACAGCATTGCTCTATAaaaaaa aaa                                                                                                                                    ]
[+] EMBL CF324638             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGGTTAATAGATGAAGCCCTA GGAA AAGGAGTGAAAGTTGCAGTATGCAGTACTTCA AATGAGAAAGCTGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAG AAA AAATTACCATATTTGCTGGAGATGT GGTTCCTCGT AAAAAACCTGATCCA GCAATC TACTT ACTTGCA GCAACCACACTTGGAGTCGATCCATCTAGTTGTG TTGTTGT TGAAGACAGTACTA TA GGGCTTGCAGCAGCCAAAG CTGCTGGTATGAAGTGTATCGT AACAAAAAGCGGA TACACTGCAGAA GAGGACTTTGC AACAGCTGATGCTGTGTTCGATTGCATTGGT GACCCTCCAGA AGTACGCTTTGATTTGGAGTTCTGCGCCAACCTCCTCCAGAAACAATTTGTAAGCTGAAGGAGCAGACGGTCAATTTCACCCATATCATATAAATTCTATAAATTCTTGCCCAGGAT                                                                                                                                                                                                                       ]
[+] EMBL CB683813             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TAATACATGAAGCCCTA GGAA AAGGAGTGAAAGTTGCAGTATGCAGTACTTCA AATGAGAAAGCTGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAG AAA AAATTACCATATTTGCTGGAGATGT GGTTCCTCGT AAAAAACCTGATCCA GCAATC TACTT ACTTGCA GCAACCACACTTGGAGTCGATCCATCTAGTTGTG TTGTTGT TGAAGACAGTACTA TA GGGCTTGCAGCAGCCAAAG CTGCTGGTATGAAGTGTATCGT AACAAAAAGCGGA TACACTGCAGAA GAGGACTTTGC AACAGCTGATGCTGTGTTCGATTGCATTGGT GACCCTCCAGA AGTACGCTTTGATTTGGAGTTCTGCGCCAACCTCCTCCAGAAACAATTTGTAAGCTGAAGGAGCAGACGGTCAATTTCACCCATATCATATAAATTCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGGTCT CTATAAAATCATTCCAAATACAAGAGTCAAGAGGAACAGCATTGCTTTATATACTAT TGATATTTGTTATTTATGTATAGAGGAGTACATATATGAACATAAT AGAATAAGAAATCGAAATA                                                                     ]
[+] EMBL BQ905946             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAGATGTGGGTTCCTCGT  AAAACCNGGATCCACGCAATCTTACTTGACTGGCACGCAACCACACTGGGAGTCGATCCATCTAGTTGTG TTGTT T TGAAGACAGTACTA TA GGGCTTGCAGCAGCCAAAG CTGCTGGTATGAAGTGTATCGTGAACCAAAAGCGGA TACACTGCAGAA GAGGACTTTGC AACAGCTGATGCTGTGTTCGATTGCATTGGT GACCCTCCAGA AGTACGCTTTGATTTGGAGTTCTGCGCCAACCTCCTCCAGAAAC ATTTGTAAGCTGAAGGA CAGACGGTCAATTTCACCCATATCATATAAATTCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGGTCT CTATAAAATCATTCC AATACAAGAGTCAAGAGGAACANCATTGCTCTATATACTATGTGATATTTGTTATTTATGTATAGAGGAGTACATATATGAACATAATCAGAATAAGAAATCGAAATATCTTTAAaaaaa                                                         ]
[+] EMBL AU166932             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CACTTGGAGTCGATCCATCTAGTTGTG TTGTTGT TGAAGACAGTACTA TA GGGCTTGCAGCAGCCAAAG CTGCTGGTATGAAGTGTATCGT AACAAAAAGCGGA TACACTGCAGAA GAGGACTTTGC AACAGCTGATGCTGTGTTCGATTGCATTGGT GACCCTCCAGA AGTACGCTTTGATTTGGAGTTCTGCGCCAACCTCCTCCAGAAACAATTTGTAAGCTGAAGGAGCAGACGGTCAATTTCACCCATATCATATAAATTCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGGTCT CTATAAAATCATTCCAAATACAAGAGTCAAGAGGAACAGCATTGCTTTATATACTAT TGATATTTGTTATTTATGNATAGAGGAGNACATATATGGACATAAT AGAATAAGNAATCGNAATATCTTTAATTGAAAaa                                                      ]
[+] EMBL BM420381             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACCCTGCAGAA GAGGACTTTGC  ACAGCTGATGCTGTGTTCGATTGCATTGGT GACCCTCCAGAGAGTACGCTTTGATTTGGAGTTCTGCGCC ACCTCCTCCAGAAACAATTTGTAAGCTGAAGGAGCAGACGGTCAATTTCACCCATATCATATAAATTCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGGTCT CTATAAAATCATTCC AATACAAGAGTCAAGAGG ACAGC TTGCTCTATATACTAT TGATATTTGTTATTTATGTATAGAGGAGTACATATATGAACATAAT AGAATAAGAAATCGCAATATCTTTAATTGAAATTTGTTACTAAAAA                                          ]
[+] EMBL CF301276             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGACGGTCAATTTCACCCATATCATATAAATTCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGGTCT CTATAAAATCATTCCAAATACAAGAGTCAAGAGGAACAGCATTGCTTTATATACTAT TGATATTTGTTATTTATGTATAGAGGAGTACATATATGAACATAAT AGAATAAGAAATCGAAATATCTTTAATTGAAATTTGTTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA         ]
[+] EMBL CF305469             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCACCCATATCATATAAATTCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGGTCT CTATAAAATCATTCCAAATACAAGAGTCAAGAGGAACAGCATTGCTTTATATACTAT TGATATTTGTTATTTATGTATAGAGGAGTACATATATGAACATAAT AGAATAAGAAATCGAAATATCTTTAATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF337160             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCACCCATATCATATAAATTCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGGTCT CTATAAAATCATTCCAAATACAAGAGTCAAGAGGAACAGCATTGCTTTATATACTAT TGATATTTGTTATTTATGTATAGAGGAGTACATATATGAACATAAT AGAATAAGAAATCGAAATATCTTTAATTGA                                                          ]
[+] EMBL CB096944             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       aggacGAGACAAGGGGAACAGCATTGCTCTATATACTAT TGATATTTGTTATTTATGTATAGAGGAGTACATATATGAACATAAT AGAATAAGAAATCGAAATATCTTTAATTGAAATTTGTTACTAAAAAAAAAAAAAAAAA                              ]


>consensus_15174#0 TTCGCCAGTTCAGCTCGCCATTTCGCCATGGCCCCCGCCGCCGCATCATCGTCCGCGCTG CTCCCCGCGGGGACCTTCTCCACCGCCCGCCCCGTCGCGGGCCGGCCCGCCGGCCAGCGC CTTCCCACGAGGGTAGCCGCCGCGAGCAGGACGACGACGGCGCGTTCTCCTGCCGCCTGC CTCTCCGTCGGGGGCAGGAGGCGGGGAGCGGAGGCCGTCCGCGCGTCCGCGGGGGGAGCG CCGGCCGCGTCCCTCCCGGCGGCGCTGCTGTTCGACTGCGACGGCGTGCTGGTGGACACG GAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGCCGAGAGGGAATTAGGTGTG AGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAGATAGGTGGCGGAAAGGAAAGGATG ACAGCGTATTTCAGCAAAATGGGGTGGCCAGCTAAAGCACCAAAGACTGACGACGAAAGA AAGGAGTTTATTGCTTCGCTGCACAAGAGGAAAACAGAATTATTCATGGCTCTGATTGAG AAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGGTTAATAGATGAAGCCCTAGGAAAA GGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTGTTTCGGCAATAGTTTCA TGTTTACTGGGCCCTGATCGTGCAGAAAAAATTACCATATTTGCTGGAGATGTGGTTCCT CGTAAAAAACCTGATCCAGCAATCTACTTACTTGCAGCAACCACACTTGGAGTCGATCCA TCTAGTTGTGTTGTTGTTGAAGACAGTACTATAGGGCTTGCAGCAGCCAAAGCTGCTGGT ATGAAGTGTATCGTAACAAAAAGCGGATACACTGCAGAAGAGGACTTTGCAACAGCTGAT GCTGTGTTCGATTGCATTGGTGACCCTCCAGAAGTACGCTTTGATTTGGAGTTCTGCGCC AACCTCCTCCAGAAACAATTTGTAAGCTGAAGGAGCAGACGGTCAATTTCACCCATATCA TATAAATTCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGGTCTCTATAAAATC ATTCCAAATACAAGAGTCAAGAGGAACAGCATTGCTTTATATACTATTGATATTTGTTAT TTATGTATAGAGGAGTACATATATGAACATAATAGAATAAGAAATCGAAATATCTTTAAT TGAAATTTGTTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA A



consensusID : consensus_15174#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence
                              [TCCAGAATGAGGACTTTGCAACATCTGATGCTGTGTTCGATTGCATTGGTGACCCTCCAGAAGTACGCTTTGATTTGGAGTTTTGCGTCCACACCTCCTCCCGAAACCATTTGTAACTGAAGGACCGACGTCCATTTCACCCCTATCATATAAATTCTATAAATTCTTGCCCCGGATTATGGAAAGCGGAAATGGGTCTCTATAAAATCCTTCCCAATACACAGAGTCCAGAGGAACACGCCTTGCTCTATATACTGATTGATATTT]

[+] EMBL BI809793             [TCCAGAATGAGGACTTTGCAACATCTGATGCTGTGTTCGATTGCATTGGTGACCCTCCAGAAGTACGCTTTGATTTGGAGTTTTGCGTCCACACCTCCTCCCGAAACCATTTGTAACTGAAGGACCGACGTCCATTTCACCCCTATCATATAAATTCTATAAATTCTTGCCCCGGATTATGGAAAGCGGAAATGGGTCTCTATAAAATCCTTCCCAATACACAGAGTCCAGAGGAACACGCCTTGCTCTATATACTGATTGATATTT]


>consensus_15174#1 TCCAGAATGAGGACTTTGCAACATCTGATGCTGTGTTCGATTGCATTGGTGACCCTCCAG AAGTACGCTTTGATTTGGAGTTTTGCGTCCACACCTCCTCCCGAAACCATTTGTAACTGA AGGACCGACGTCCATTTCACCCCTATCATATAAATTCTATAAATTCTTGCCCCGGATTAT GGAAAGCGGAAATGGGTCTCTATAAAATCCTTCCCAATACACAGAGTCCAGAGGAACACG CCTTGCTCTATATACTGATTGATATTT



consensusID : consensus_15174#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 168
fasta sequence
                              [AAGGGGAACAGCATTGCTCTATATACTATTGATATTTGTTATTTATGTATAGAGGAGTACATATATGAACATAATAGAATAAGAAATCGAAATATCTTTAATTGAAATTTGTTACTAAATCTGTCCTAAAAACAAGTTCACTTTTCTAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA765665             [AAGGGGAACAGCATTGCTCTATATACTATTGATATTTGTTATTTATGTATAGAGGAGTACATATATGAACATAATAGAATAAGAAATCGAAATATCTTTAATTGAAATTTGTTACTAAATCTGTCCTAAAAACAAGTTCACTTTTCTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA764121             [              TGCTCTATATACTATTGATATTTGTTATTTATGTATAGAGGAGTACATACATGAACATAATAGAATAAGAAATCGAAATATCTTTAATTGAAATTTGTTACTAAATCTGTCCTAAAAAAAAaaaaa                            ]


>consensus_15174#2 AAGGGGAACAGCATTGCTCTATATACTATTGATATTTGTTATTTATGTATAGAGGAGTAC ATATATGAACATAATAGAATAAGAAATCGAAATATCTTTAATTGAAATTTGTTACTAAAT CTGTCCTAAAAACAAGTTCACTTTTCTAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15174#0      TTCGCCAGTTCAGCTCGCCATTTCGCCATGGCCCCCGCCGCCGCATCATCGTCCGCGCTG 60
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      CTCCCCGCGGGGACCTTCTCCACCGCCCGCCCCGTCGCGGGCCGGCCCGCCGGCCAGCGC 120
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      CTTCCCACGAGGGTAGCCGCCGCGAGCAGGACGACGACGGCGCGTTCTCCTGCCGCCTGC 180
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      CTCTCCGTCGGGGGCAGGAGGCGGGGAGCGGAGGCCGTCCGCGCGTCCGCGGGGGGAGCG 240
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      CCGGCCGCGTCCCTCCCGGCGGCGCTGCTGTTCGACTGCGACGGCGTGCTGGTGGACACG 300
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      GAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGCCGAGAGGGAATTAGGTGTG 360
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      AGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAGATAGGTGGCGGAAAGGAAAGGATG 420
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      ACAGCGTATTTCAGCAAAATGGGGTGGCCAGCTAAAGCACCAAAGACTGACGACGAAAGA 480
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      AAGGAGTTTATTGCTTCGCTGCACAAGAGGAAAACAGAATTATTCATGGCTCTGATTGAG 540
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      AAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGGTTAATAGATGAAGCCCTAGGAAAA 600
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      GGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTGTTTCGGCAATAGTTTCA 660
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      TGTTTACTGGGCCCTGATCGTGCAGAAAAAATTACCATATTTGCTGGAGATGTGGTTCCT 720
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      CGTAAAAAACCTGATCCAGCAATCTACTTACTTGCAGCAACCACACTTGGAGTCGATCCA 780
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      TCTAGTTGTGTTGTTGTTGAAGACAGTACTATAGGGCTTGCAGCAGCCAAAGCTGCTGGT 840
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      ATGAAGTGTATCGTAACAAAAAGCGGATACACTGCAGAA-GAGGACTTTGCAACAGCTGA 899
consensus_15174#1      --------------------------------TCCAGAATGAGGACTTTGCAACATCTGA 28
consensus_15174#2      ---------------------------------------------------AAGGGGAAC 9
                                                                          **       

consensus_15174#0      TGCTGTGTTCGATTGCATTGGTGACCCTCCAGAAGTACGCTTTGATTTGGAGTTCTGCGC 959
consensus_15174#1      TGCTGTGTTCGATTGCATTGGTGACCCTCCAGAAGTACGCTTTGATTTGGAGTTTTGCGT 88
consensus_15174#2      AGCATTGCTCTAT-ATACTATTGATATTTGTTATTTATGTATAGAGGAGTACATATATGA 68
                        **  ** ** **   * *  ***   *    *  ** *  * **   * *  * *  * 

consensus_15174#0      CAAC--CTCCTCCAGAAACAATTTGTAAGCTGAAGGAGCAGACGGTCAATTTCACCCATA 1017
consensus_15174#1      CCACACCTCCTCCCGAAACCATTTGTAA-CTGAAGGACC-GACG-TCCATTTCACCCCTA 145
consensus_15174#2      ACATA----ATAGAATAAGAAATCGAAATATCTTTAATT-GAAATTTGTTACTAAATCTG 123
                         *       *     **  * * * **  *     *   **   *   *   *    * 

consensus_15174#0      TCATATAAATTCTATAAATTCTTGCCCAGGATTATGGAAAGCGGAAATGG-TCTCTATAA 1076
consensus_15174#1      TCATATAAATTCTATAAATTCTTGCCCCGGATTATGGAAAGCGGAAATGGGTCTCTATAA 205
consensus_15174#2      TCCTAAAAAC-----AAGTTCACTTTTCTAAAAAAAAAAAAAAAAAAAAA---------- 168
                       ** ** ***      ** ***         *  *   ***    ***             

consensus_15174#0      AATCATTCCAAATACA-AGAGTCAAGAGGAACA-GCATTGCTTTATATACT-ATTGATAT 1133
consensus_15174#1      AATCCTTCCCAATACACAGAGTCCAGAGGAACACGCCTTGCTCTATATACTGATTGATAT 265
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      TTGTTATTTATGTATAGAGGAGTACATATATGAACATAATAGAATAAGAAATCGAAATAT 1193
consensus_15174#1      TT---------------------------------------------------------- 267
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      CTTTAATTGAAATTTGTTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1253
consensus_15174#1      ------------------------------------------------------------
consensus_15174#2      ------------------------------------------------------------
                                                                                   

consensus_15174#0      AAAAAAAA 1261
consensus_15174#1      --------
consensus_15174#2      --------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)