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Oryza sativa
cluster # 1518 cluster # 1518       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1518#0 length = 1310 sequences # 2  

consensusID : consensus_1518#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1310
fasta sequence
                              [CAAGGAAGCCAAGAACCAACTATGGCGGGCGACGGGCTTCCCCGGATCGCGGTGGTCGGCGCCGGCATCTTCGCGCGCACCCAGTACATCCCAAGGCTCCGCGAGATCGCCCACCTCGTCCTCCTCAAGACCATCTGGAGCCGCACCAAGGAATCCGCGGAGGCCGCCGCGGAGCTCGCCCGGGACTTCGCGCCCGAGATCCAGCCCAGATGGGGCGACGCGGGCCTGGAGGAGATTATGGGAGACGCTTCCATCTCCGCCGTCGCCGTCGTTCTTGCTGGCCAAGTGCAGGTTGACCTCTCCTTAAAAATGCTCAAGGCAGGAAAGCATGTGATACAAGAGAAACCTGCTTCTGGATCAACAATGGAAGCAGAAACAGCATTGTCAGTTTACAATTCATTTCCAAACCAATT-CCCATACAAACCAATTTGGGCTCTGGCAGAAAACTACAGATTTGAACCTGCATTTGTGGAGTCAAGGAAGTTGATGAGTGATATTGGTGATATGATGAACATCCAAGTTATTGTTGAAGGGTCAATGAATAGTTCAAATCCATACTTTAATAGCTCCTGGAGAAGAAATTTTGTGGGTGGCTTTATACTGGATATGGGTGTGCATTTCATAGCAGGACTAAGAATGATGGTTGGTTCAGAAATAGCAACTGTATCGTCTATCTCCCGTCATGTGGATAAGGCTTTACCACCACCTGATAACATATGTTCTCTTTTCCAGCTAGAAAATGGATGCGCTGGGGTCTTTGTGTTTGCAGTCAACTCGAGAACACCCAAGATATTATGGCGGGTGGATGGAACTAGAGGAACAGTGCAAATAGAACGTGGAATTGCTAGTGGGAAGCATGGGTACCAGGTTTTATTCACCAATGAAAATGGGCAGTGCCAGACGACATTTTATCCATTCTGTGGCGTGAATGAAGAACTGAAGGCTTTTGTTCATGACATTGTGCAGGCAAACAAAGATGGGGATCACAAGGCTGAACCCCGCAGTTCTTATGTTGAAGGCGCACGGGATGTCGCCGTTCTAGAAGCCATGCTTGAATCTAGTGCGAAGCAAGGAACCATGGTCCAAGTGAAGAAATTCTAACATCCATAAAATTGTTCAAAAAAAGAGAGGGAAATATATTCTTCAGCAAGTTGGTACGCCAATTATGTAGCTTTACTAATAAGGAACATTTTTTCCAAGTTCATACATACCATTGAGAGTACAGCGTGCAAATAGCAGTGTTTCCAGAGAACCAACTTTCTTTGACTCCATACATATTTGTTGGCTTGTTGCCATTGATAAATTGATTA]

[+] EMBL AK073346             [CAAGGAAGCCAAGAACCAACTATGGCGGGCGACGGGCTTCCCCGGATCGCGGTGGTCGGCGCCGGCATCTTCGCGCGCACCCAGTACATCCCAAGGCTCCGCGAGATCGCCCACCTCGTCCTCCTCAAGACCATCTGGAGCCGCACCAAGGAATCCGCGGAGGCCGCCGCGGAGCTCGCCCGGGACTTCGCGCCCGAGATCCAGCCCAGATGGGGCGACGCGGGCCTGGAGGAGATTATGGGAGACGCTTCCATCTCCGCCGTCGCCGTCGTTCTTGCTGGCCAAGTGCAGGTTGACCTCTCCTTAAAAATGCTCAAGGCAGGAAAGCATGTGATACAAGAGAAACCTGCTTCTGGATCAACAATGGAAGCAGAAACAGCATTGTCAGTTTACAATTCATTTCCAAACCAATT CCCATACAAACCAATTTGGGCTCTGGCAGAAAACTACAGATTTGAACCTGCATTTGTGGAGTCAAGGAAGTTGATGAGTGATATTGGTGATATGATGAACATCCAAGTTATTGTTGAAGGGTCAATGAATAGTTCAAATCCATACTTTAATAGCTCCTGGAGAAGAAATTTTGTGGGTGGCTTTATACTGGATATGGGTGTGCATTTCATAGCAGGACTAAGAATGATGGTTGGTTCAGAAATAGCAACTGTATCGTCTATCTCCCGTCATGTGGATAAGGCTTTACCACCACCTGATAACATATGTTCTCTTTTCCAGCTAGAAAATGGATGCGCTGGGGTCTTTGTGTTTGCAGTCAACTCGAGAACACCCAAGATATTATGGCGGGTGGATGGAACTAGAGGAACAGTGCAAATAGAACGTGGAATTGCTAGTGGGAAGCATGGGTACCAGGTTTTATTCACCAATGAAAATGGGCAGTGCCAGACGACATTTTATCCATTCTGTGGCGTGAATGAAGAACTGAAGGCTTTTGTTCATGACATTGTGCAGGCAAACAAAGATGGGGATCACAAGGCTGAACCCCGCAGTTCTTATGTTGAAGGCGCACGGGATGTCGCCGTTCTAGAAGCCATGCTTGAATCTAGTGCGAAGCAAGGAACCATGGTCCAAGTGAAGAAATTCTAACATCCATAAAATTGTTCAAAAAAAGAGAGGGAAATATATTCTTCAGCAAGTTGGTACGCCAATTATGTAGCTTTACTAATAAGGAACATTTTTTCCAAGTTCATACATACCATTGAGAGTACAGCGTGCAAATAGCAGTGTTTCCAGAGAACCAACTTTCTTTGACTCCATACATATTTGTTGGCTTGTTGCCATTGATAAATTGATTA]
[+] EMBL CA753640             [           AGAACCAACTATGGCGGGCGACGGGCTTCCCCGGATCGCGGTGGTCGGCGCCGGCATCTTCGCGCGCACCCAGTACATCCCAAGGCTCCGCGAGATCGCCCACCTCGTCCTCCTCAAGACCATCTGGAGCCGCACCAAGGAATCCGCGGAGGCCGCCGCGGAGCTCGCCCGGGACTTCGCGCCCGAGATCCAGCCCAGATGGGGCGACGCGGGCCTGGAGGAGATTATGGGAGACGCTTCCATCTCCGCCGTCGCCGTCGTTCTTGCTGGCCAAGTGCAGGTTGACCTCTCCTTAAAAATGCTCAAGGCAGGAAAGCATGTGATACAAGAGAAACCCGCTTCTGGATCAACAATGGAAGCAGAACCAGCATTGTCCGTTTACAATTCATTTCCAAACCCATTCCCCATACAAACCCATTTGGGCCCTGGCAAAAAACAACAGATTTGAACCTGCATTTGTGGAGTCCAGGAAGTTAATTATTAATATTGGTGATTTGATAAACTTCC AGTTATTGTTAAAGGGTTCATGAATATTTCAATTCCAATCTTGAATACCCCCGGGA AAAAAAATTGGTGGGTGGCCTAATACgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_1518#0 CAAGGAAGCCAAGAACCAACTATGGCGGGCGACGGGCTTCCCCGGATCGCGGTGGTCGGC GCCGGCATCTTCGCGCGCACCCAGTACATCCCAAGGCTCCGCGAGATCGCCCACCTCGTC CTCCTCAAGACCATCTGGAGCCGCACCAAGGAATCCGCGGAGGCCGCCGCGGAGCTCGCC CGGGACTTCGCGCCCGAGATCCAGCCCAGATGGGGCGACGCGGGCCTGGAGGAGATTATG GGAGACGCTTCCATCTCCGCCGTCGCCGTCGTTCTTGCTGGCCAAGTGCAGGTTGACCTC TCCTTAAAAATGCTCAAGGCAGGAAAGCATGTGATACAAGAGAAACCTGCTTCTGGATCA ACAATGGAAGCAGAAACAGCATTGTCAGTTTACAATTCATTTCCAAACCAATTCCCATAC AAACCAATTTGGGCTCTGGCAGAAAACTACAGATTTGAACCTGCATTTGTGGAGTCAAGG AAGTTGATGAGTGATATTGGTGATATGATGAACATCCAAGTTATTGTTGAAGGGTCAATG AATAGTTCAAATCCATACTTTAATAGCTCCTGGAGAAGAAATTTTGTGGGTGGCTTTATA CTGGATATGGGTGTGCATTTCATAGCAGGACTAAGAATGATGGTTGGTTCAGAAATAGCA ACTGTATCGTCTATCTCCCGTCATGTGGATAAGGCTTTACCACCACCTGATAACATATGT TCTCTTTTCCAGCTAGAAAATGGATGCGCTGGGGTCTTTGTGTTTGCAGTCAACTCGAGA ACACCCAAGATATTATGGCGGGTGGATGGAACTAGAGGAACAGTGCAAATAGAACGTGGA ATTGCTAGTGGGAAGCATGGGTACCAGGTTTTATTCACCAATGAAAATGGGCAGTGCCAG ACGACATTTTATCCATTCTGTGGCGTGAATGAAGAACTGAAGGCTTTTGTTCATGACATT GTGCAGGCAAACAAAGATGGGGATCACAAGGCTGAACCCCGCAGTTCTTATGTTGAAGGC GCACGGGATGTCGCCGTTCTAGAAGCCATGCTTGAATCTAGTGCGAAGCAAGGAACCATG GTCCAAGTGAAGAAATTCTAACATCCATAAAATTGTTCAAAAAAAGAGAGGGAAATATAT TCTTCAGCAAGTTGGTACGCCAATTATGTAGCTTTACTAATAAGGAACATTTTTTCCAAG TTCATACATACCATTGAGAGTACAGCGTGCAAATAGCAGTGTTTCCAGAGAACCAACTTT CTTTGACTCCATACATATTTGTTGGCTTGTTGCCATTGATAAATTGATTA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)