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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1664 fasta sequence
[CGAACTTAAAATCGCAGTCGCACCCCGGCGCCGATCGCAAGGTCCACCTCCTCCCCTCTCCACTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTCGCCGCCGCCGTCGCGGCCT-CGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGCCGCGGGCGTCCTCAAGGGCGTCGCCACGGTCGCCGCGCTCGACGCCGACGCGCACAAGGAGCTCGCGCAGGAATATGGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTTCCTGGAAAGCCTCCAGTAGATTATCAAGGAGCAAGAGATGTAAAGCCAATTGTTGAATTTGCTCTTTCACAGGTCAAGGCTCTTCTTAGAGATCGGTTGAATGGAAAGACATCAGCAGGTTCAGGTGGCAAGAAATCAGGTGGTTCAAGTGAGAAAACTGAACCAAGTGCGTCAATAGAATTAAATTCTCAAAACTTCGATAAACTTGTCACCAAAAGCAAGGATCTTTGGATTGTTGAGTTCTTTGCACCATGGTGTGGGCACTGCAAGAAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAACTTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGCAAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCATTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGACGNCAT-GGAAGAGGAAATGTGCTTNT-CTGCCATTTGCTNTGTATCTNTCCTTCCAGATATCTTGGATTCAAAGG-CCGAAGGAAGAAAC-AAGTACCTTGA-GCTGCTA-TTATCTGTTGCTGAGAAATTTAAAAAGAGTCCATACAGTTTTGTCTGGACAGCTGCTGGGAAGCAAGCTGATCTTGAGAAGCAAGTTGGAGTTGGTGGTTATGGCTATCCAGCGATGGTTGCTCTCAACGTG-AAAAAAGGCGCATATGCTCCACTCCGTAGTGCTTTCCAGCTTG-ATGAAATAACTGAGTTTGTGAAGGAAGCA-GGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCA-TGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT-CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG--AAATGATGTT-AGAGTTGATTA-GCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATCGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAAT-AAAACTACTTCGTAATCTAAAAAAAAAAAAAAAAAAAAACTCGAGACTA]
[+] EMBL AK062254 [CGAACTTAAAATCGCAGTCGCACCCCGGCGCCGATCGCAAGGTCCACCTCCTCCCCTCTCCACTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTCGCCGCCGCCGTCGCGGCCT CGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGCCGCGGGCGTCCTCAAGGGCGTCGCCACGGTCGCCGCGCTCGACGCCGACGCGCACAAGGAGCTCGCGCAGGAATATGGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTTCCTGGAAAGCCTCCAGTAGATTATCAAGGAGCAAGAGATGTAAAGCCAATTGTTGAATTTGCTCTTTCACAGGTCAAGGCTCTTCTTAGAGATCGGTTGAATGGAAAGACATCAGCAGGTTCAGGTGGCAAGAAATCAGGTGGTTCAAGTGAGAAAACTGAACCAAGTGCGTCAATAGAATTAAATTCTCAAAACTTCGATAAACTTGTCACCAAAAGCAAGGATCTTTGGATTGTTGAGTTCTTTGCACCATGGTGTGGGCACTGCAAGAAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAACTTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGCAAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCATTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGACGCCAT GGAAGAG ]
[+] EMBL OSC104752 [ CCACTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTCGCCGCCGCCGTCGCGGNCTACGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTNCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGAGCCGTGGTGCGGGCACTGCCAGCAGCTGACGNCGATTTGGGAGAAGGCAGNGGGCGTCCTCAAGGGAGT ]
[+] EMBL OSS4357A [ ATGGTGTGGGCACTGCAAGAAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAACTTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGCAAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCATTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTNGAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGACGNCATGGGAAGA GAAATGTGCTTNTGCTGCCATTTGCTNTGTATCTNTCCTTCCAGATATCTTGGATTCAAAGGCCCGAGGTAAGAAACAAAGTACCTTGAGGCTGCTANTTATCctg ]
[+] EMBL OSS14110A [ ATGGTGTGGGCACTGCAAGAAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAACTTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGCAAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCATTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGACGNCAT GGAAGAG ]
[+] EMBL AU092093 [ CTTCCAGATATCTTGGATTCAAAGG CCGAAGGAAGAACC AAGTACCTTGA GCTGCTA TTATCTGTTGCTGAGAAATTTAAAAAGAGTCCATACAGTTTTGTCTGGACAGCTGCTGGGAAGCAAGCTGATCTTGAGAAGCAAGTTGGAGTTGGTGGTTATGGCTATCCAGCGATGGTTGCTCTCAACGTG AAAAAAGGCGCATATGCTCCACTCCGTAGTGCTTTCCAGCTTG ATGAAATAACTGAGTTTGTGAAGGAAGCA GGGCNCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCA TGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATCGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAAT AAAACTACTTCGTAATCTAAAAAAAAAAAAAAAAA ]
[-] EMBL CB656586 [ TCCAGATATCTTGGATTCAAAGG CCGAAGGAAGAAAC AAGTACCTTGA GCTGCTA TTATCTGTTGCTGAGAAATTTAAAAAGAGTCCATACAGTTTTGTCTGGACAGCTGCTGGGAAGCAAGCTGATCTTGAGAAGCAAGTTGGAGTTGGTGGTTATGGCTATCCAGCGATGGTTGCTCTCAACGTG AAAAAAGGCGCATATGCTCCACTCCGTAGTGCTTTCCAGCTTG ATGAAATAACTGAGTTTGTGAAGGAAGCA GGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCA TGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATCGTTTGTGGTCTTTTAGGAGGGAGGCTTTTCTCTGGGAAAT AAAACTACTTCGTAA ]
[+] EMBL OSC26961 [ gtncacanTCCAGATATCTTGGATTCAAAGG CCGAAGGAAGAAAC AAGTACCTTGA GCTGCTA TTATCTGTTGCTGAGAAATTTAAAAAGAGTCCATACAGTTTTGTCTGGNCAGCTGNTGGGAAGCAAGCTGATCTTGAGAAGCAAGTTGGAGTTGGTGGTTATGGCTATCCAGCGATGGTTGCTNTNAACGTGn ]
[+] EMBL C73336 [ TTTTNTNTGGACAGCTGCTGGGAAGCAAGCTGATCTTNAGAAGCAAGTTGGAGTTGGTGGTTATGGCTATCCAGCGATGGTTGCTCTCAACGTG AAAAAAGGCGCATATGCTCCACTCCGTAGTGCTTTCCAGCTTG ATGAAATAACTGANTTTGTGAAGGAAGCA GGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCA TGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTNATTCTNATAATTCCGGGAAAATGATGTTAAGAGTTGATTAGGCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTNGGCGGGGCAATTTCCAGAATGCT ]
[+] EMBL BM421594 [ TTATGGCTATCCAGCGAT GTTGCTCTCAACGTG AAAAAAGGCGCATATGCTCCACTCCGTAGTGCTTTCCAGCTTG ATGAAATAACTGAGTTTGTGAAGGAAGCACGGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCC ACGATAGTCCCATCTGAACCACTGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTC ACTGTAC ATTTGGGCGGGAC ATTTTCAGAATGCTCCTTTGGTGTTATTACAGTATATTTTAGTTGAAGAAAAACCTTGTTTGTGGTCTTTTAGGAGGGATGCTTTTATCTGGGAAAT AAAAaaaaaa ]
[+] EMBL AU165134 [ ttCGTGTAAGTATGGATCCGATGCTCCACTCCATGCTGCTTTCCATCTTGCATCTATCCTCTGACTTTGTGAATGAAGCT GGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCA TGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCAGACTGTGGATCTGAGTAACACTATTGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACGATTTTCACAATGCTCCTTTGGTGTTATTACACTACATTTTAGTTGAAGAAAAACATCGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAGT TAAACTACTTCGTAATCTAAAAA ]
[-] EMBL CF325626 [ CAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATCGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAAT AAAACTACTTCGTAATCTAGAAAAAAAAAAAAAAAAAAACTCGAGACTA]
[+] EMBL BI797629 [ GGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCTCCCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCTGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTC ACTGTAC ATTTGGGCGGGAC ATTTTCAGAATGCTCCTTTGGTGTTATTACAGTATATTTTAGTTGAAGAAAAAC TTGTTTGTGGTCTTTTAGGAGGGATGCTTTTATCTGGGAAAT AAAACTACTTCGTAATCTAAAAA ]
[+] EMBL BI795453 [ GGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTAC ATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTATATTTTAGTTGAAGAAAAAC TTGTTTGTGGTCTTTTAGGAGGGATGCTTTTATCTGGGAAATCAAAACTACTTCGTAATCTAAAAAA ]
consensusID : consensus_15180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1106 fasta sequence
[CGACGTGGAGGCTCTCCATTGGTCCGCACACGCGTCCGTCCGTCTTCCTCGCGAGCGAACTTAAAATCGCAGTCGCACCCCGGCGCCGATCGCAAGGTCCACCTCCTCCCCTCTCCACTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTCGCCGCCGCCGTCGCGGCCTCGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGCCGCGGGCGTCCTCAAGGGCGTCG-CACGGTCGCCGCGCTCGACGCCGACGCGCACAAGGAGCTCGCGCAGGAATAT-GGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTT-CCTGGAAAGCCTCCAGTAGATTATCAAGG-AGCAAGAGATGTAAAGCCAA-TTGTT-GAATTTGCTCTTTCACAGGTCAAGGCTCTTCTTAGAGATCGGTTGAATGGAAAGACATCAGCAGGTTCAGGTGGCAAGAAATCAGGTGGTTCAAGTGAGAAAACTGAACCAAGTGCGTCAATAGAATTAAATTCTCAAAACTTCGATAAACTTGTCACCAAAAGCAAGGATCTTTGGATTGTTGAGTTCTTTGCACCATGGTGTGGGCACTGCAAGAAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAACTTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGCAAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCATTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGTAAGTTTTCGTGATATTAACAAAGTTATCCTTTTGTGGAGACAATGGTCTGGGATTGATGTTTTGACGAGGTGGTTTGGCTTCTGTAGGACGCCATGGAAGAG]
[+] EMBL AK072941 [CGACGTGGAGGCTCTCCATTGGTCCGCACACGCGTCCGTCCGTCTTCCTCGCGAGCGAACTTAAAATCGCAGTCGCACCCCGGCGCCGATCGCAAGGTCCACCTCCTCCCCTCTCCACTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTCGCCGCCGCCGTCGCGGCCTCGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGCCGCGGGCGTCCTCAAGGGCGTCGCCACGGTCGCCGCGCTCGACGCCGACGCGCACAAGGAGCTCGCGCAGGAATAT GGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTT CCTGGAAAGCCTCCAGTAGATTATCAAGG AGCAAGAGATGTAAAGCCAA TTGTT GAATTTGCTCTTTCACAGGTCAAGGCTCTTCTTAGAGATCGGTTGAATGGAAAGACATCAGCAGGTTCAGGTGGCAAGAAATCAGGTGGTTCAAGTGAGAAAACTGAACCAAGTGCGTCAATAGAATTAAATTCTCAAAACTTCGATAAACTTGTCACCAAAAGCAAGGATCTTTGGATTGTTGAGTTCTTTGCACCATGGTGTGGGCACTGCAAGAAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAACTTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGCAAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCATTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGTAAGTTTTCGTGATATTAACAAAGTTATCCTTTTGTGGAGACAATGGTCTGGGATTGATGTTTTGACGAGGTGGTTTGGCTTCTGTAGGACGCCATGGAAGAG]
[+] EMBL AU101462 [ ACTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTCGCCGCCGCCGTCGCGGCGTCGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGCGGGCACTGNCAGCAGCTGACGCCGATTTGGGAGAAGGCCGCGGGCGTCCTCAAGGGCGTCG CACGGTCGCCGCGCTCGACGNCGACGCGCACAAGGAGCTCGCGCAGGAATAT GGAATAAGAGGATTTNCAACTATTAAGGTGTTTGTT CCTGGGAAGCCTNCAGTAGATTATCAAGG AGCAAGAGATTTNAAGCCAATTTGTT GAATT ]
[+] EMBL C93612 [ CTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTNGCCGCCGCCGTCGCGGACTCGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGCCGCGGGCGTCCTCAAGGGCGTCG CACGGTCGCCGCGCTCGACGCNGACGCGCACAAGGAGCTCGCGCAGGAATAT GGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTTNCTTGGAAAGGCTCCAGTAGATTATCAAGGTGGCAAGAGATGTAAAGCCAA TTTTTNGAA ]
[+] EMBL C28486 [ TCNACCCCGCCAT NGCCCCG GGTCGCCGCCNCCCTCCTCCTCGTCGCCNCCNCCGT CGGATNCGCCGNTTTCCGCCCTCTACTCCGCCGGCTCTCCCNTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGNGNGCACTG CAGCAGCTGACGCCGATTTGGGAGAAGGCCGC GGNGTCCTCAAGGGCGTCG CACGGTCGCCGCGCTCGACGACGACGCGCACAAGGAGCTCGCGCAGGAATATGGGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTT CCTGG ]
consensusID : consensus_15180#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 435 fasta sequence
[AAGCAGGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCATGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCTCCAGTAAATGACGAGTTGTGATTCTGATAATTCCGGAAATGATGTTAGAGTTGATTAGCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATCTGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAATAAAACTACTTCTGTAATCTAGATATTTTGCCTCAACNGTGTTTTCCTTCAAATAGAAATCTATGCTTTAAAAAA]
[+] EMBL AU172920 [AAGCAGGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCATGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCTCCAGTAAATGACGAGTTGTGATTCTGATAATTCCGGAAATGATGTTAGAGTTGATTAGCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATCTGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAATAAAACTACTTCTGTAATCTAGATATTTTGCCTCAACNGTGTTTTCCTTCAAATAGAAATCTATGCTTTAAAAAA]
[+] EMBL AU183129 [ GGACGGTACCCCAACGATAGTCCAATNTGAACCATGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCTCCAGTAAATGACGAGTTGTGATTCTGATAATTCCGGAAATGATGTTAGAGTTGATTAGCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATC GTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAATAAAACTACTTC GTAATCTAGATATTTTGCCTCAAC GTGTTTTCCTTCAAATAGAAATCTATGCTTTAAAAAA]
consensusID : consensus_15180#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence
[TTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTNANTTGACTGGCCCAGACGCCATGGAAGTAGTAAANNGCTTCTNNSCCATTTGCTTTGTATCTTTCCTTCCAGATATCTTGGATTCAAAGGCCGAAGAAGAAACAAGTNCCTTGAGCTGCTATTATCTGTTGC]
[+] EMBL AA750217 [TTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTNANTTGACTGGCCCAGACGCCATGGAAGTAGTAAANNGCTTCTNNSCCATTTGCTTTGTATCTTTCCTTCCAGATATCTTGGATTCAAAGGCCGAAGAAGAAACAAGTNCCTTGAGCTGCTATTATCTGTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15180#1 CGACGTGGAGGCTCTCCATTGGTCCGCACACGCGTCCGTCCGTCTTCCTCGCGAGCGAAC 60
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 -------------------------------------------------------CGAAC 5
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 TTAAAATCGCAGTCGCACCCCGGCGCCGATCGCAAGGTCCACCTCCTCCCCTCTCCACTC 120
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 TTAAAATCGCAGTCGCACCCCGGCGCCGATCGCAAGGTCCACCTCCTCCCCTCTCCACTC 65
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 CTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGT 180
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 CTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGT 125
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 CGCCGCCGCCGTCGCGGCCTCGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCT 240
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 CGCCGCCGCCGTCGCGGCCTCGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCT 185
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 CCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGT 300
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 CCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGT 245
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 GGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGC 360
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 GGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGC 305
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 CGCGGGCGTCCTCAAGGGCGTCGC-ACGGTCGCCGCGCTCGACGCCGACGCGCACAAGGA 419
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 CGCGGGCGTCCTCAAGGGCGTCGCCACGGTCGCCGCGCTCGACGCCGACGCGCACAAGGA 365
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 GCTCGCGCAGGAATATGGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTTCCTGGAAA 479
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 GCTCGCGCAGGAATATGGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTTCCTGGAAA 425
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 GCCTCCAGTAGATTATCAAGGAGCAAGAGATGTAAAGCCAATTGTTGAATTTGCTCTTTC 539
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 GCCTCCAGTAGATTATCAAGGAGCAAGAGATGTAAAGCCAATTGTTGAATTTGCTCTTTC 485
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 ACAGGTCAAGGCTCTTCTTAGAGATCGGTTGAATGGAAAGACATCAGCAGGTTCAGGTGG 599
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 ACAGGTCAAGGCTCTTCTTAGAGATCGGTTGAATGGAAAGACATCAGCAGGTTCAGGTGG 545
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 CAAGAAATCAGGTGGTTCAAGTGAGAAAACTGAACCAAGTGCGTCAATAGAATTAAATTC 659
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 CAAGAAATCAGGTGGTTCAAGTGAGAAAACTGAACCAAGTGCGTCAATAGAATTAAATTC 605
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 TCAAAACTTCGATAAACTTGTCACCAAAAGCAAGGATCTTTGGATTGTTGAGTTCTTTGC 719
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 TCAAAACTTCGATAAACTTGTCACCAAAAGCAAGGATCTTTGGATTGTTGAGTTCTTTGC 665
consensus_15180#2 ---------------------------AAGCAGGGCGCGGTGGGAAGGGTAATCTTCCTT 33
consensus_15180#1 ACCATGGTGTGGGCACTGCAAG--AAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAAC 777
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 ACCATGGTGTGGGCACTGCAAG--AAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAAC 723
consensus_15180#2 TGGACGGTACCCCAACGATAGTCCAATCTGAACCATGGGACGGCAAAGATGGTGAGGTTA 93
consensus_15180#1 TTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGC 837
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 TTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGC 783
consensus_15180#2 TTGAAGAG----GACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCTCCAGTAAAT 149
consensus_15180#1 AAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCA 897
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 AAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCA 843
consensus_15180#2 GA---CGAGTTGTGA----TTCTGATAATTCCGGAAATGATGTTAGAGTTGATTAGCCAG 202
consensus_15180#1 TTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTG 957
consensus_15180#3 ------------------------------------------------TTGGAGCAGTTG 12
consensus_15180#0 TTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTG 903
consensus_15180#2 ACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGAC 262
** * ** *
consensus_15180#1 GAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGTAAGTTTTCGTGAT 1017
consensus_15180#3 GAAGCCAATGCTGCTCCACCTGAAGTTTCTNANTTGACTGGCCCAG-ACGCCATGGAAGT 71
consensus_15180#0 GAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAG-ACGNCATGGAAGA 962
consensus_15180#2 AATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTG-AAGAAAAACATCT 321
* * ****** * * * * * * * * * *
consensus_15180#1 ATTAACAAAGTTATCC--------TTTTGTGG------AGACAATGG--TCTGGGATT-- 1059
consensus_15180#3 AGTAAANNGCTTCTNNSCCATTTGCTTTGTATCTTTCCTTCCAGATA--TCTTGGATT-- 127
consensus_15180#0 GGAAATGTGCTTNTCTGCCATTTGCTNTGTATCTNTCCTTCCAGATA--TCTTGGATT-- 1018
consensus_15180#2 GTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAATAAAACTACTTCTGTAATCTA 381
** * * * * *** **
consensus_15180#1 GATGTTTTGACG-A--GGTGGTTTGGCTTCTGTAGGACGCCATGGAAGAG---------- 1106
consensus_15180#3 CAAAGGCCGAAG-A--AGAAACAAG--TNCCTTGAGCTGCTATTATCTGTTGC------- 175
consensus_15180#0 CAAAGGCCGAAGGA--AGAAACAAG--TACCTTGAGCTGCTATTATCTGTTGCTGAGAAA 1074
consensus_15180#2 GATATTTTGCCTCAACNGTGTTTTCCTTCAAATAGAAATCTATGCTTTAAAAAA------ 435
* * * * * * * **
consensus_15180#1 ------------------------------------------------------------
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 TTTAAAAAGAGTCCATACAGTTTTGTCTGGACAGCTGCTGGGAAGCAAGCTGATCTTGAG 1134
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 ------------------------------------------------------------
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 AAGCAAGTTGGAGTTGGTGGTTATGGCTATCCAGCGATGGTTGCTCTCAACGTGAAAAAA 1194
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 ------------------------------------------------------------
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 GGCGCATATGCTCCACTCCGTAGTGCTTTCCAGCTTGATGAAATAACTGAGTTTGTGAAG 1254
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 ------------------------------------------------------------
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 GAAGCAGGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAA 1314
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 ------------------------------------------------------------
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 TCTGAACCATGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAG 1374
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 ------------------------------------------------------------
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 GAGCTGATGGCCGACAACTCTCCAGTAAATGACGAGTTGTGATTCTGATAATTCCGGAAA 1434
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 ------------------------------------------------------------
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 TGATGTTAGAGTTGATTAGCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGT 1494
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 ------------------------------------------------------------
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 CAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACA 1554
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 ------------------------------------------------------------
consensus_15180#3 ------------------------------------------------------------
consensus_15180#0 TTTTAGTTGAAGAAAAACATCGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAA 1614
consensus_15180#2 ------------------------------------------------------------
consensus_15180#1 --------------------------------------------------
consensus_15180#3 --------------------------------------------------
consensus_15180#0 TAAAACTACTTCGTAATCTAAAAAAAAAAAAAAAAAAAAACTCGAGACTA 1664
consensus_15180#2 --------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||