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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 948 fasta sequence
[GACACTGACATGGACTGAAGGAGTAGAAA-----TAG-AAATCAAAGAACACAAAGCATCCAAAACAACACCAGGAAACTTCTTTTCAATCGATCACTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGCTCAGGAAGCATGGCCTCGCCGGCGCCGGCGCCGGCGCCGCCGCCAGCGTCGGCAAGAAGGACAAGTCGTCGCCGTCGTCGTCACCCAAGGACAAGGAGAAGACCAAGAGCAAGTTCCTCTCCTTCGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTGCTGATCAGTCGGATCCCTGAAGATAGTTTTTTAGTGTGTGTACTGTTCCATTTGTGTTTGTCCCTCTTCCTCTCCTTCAGAAGAGGCAGCTAGCTAGCTTCATGTTTGGCTGGTCTTTTTGGCCATCTGTGCATG-TCTGTAAACTTTATTGGAGTGAGGGGAAAAAAGAGCATAATTAGTTGCTCCATGTTGAGTTGTTAGAGTGGTTTCTTGTAAATGTAATTCAGGATCTCAGATGAGCAGACAATAAAAACACACTGTTCCAGGAGTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAACAC]
[+] EMBL CF307618 [GACACTGACATGGACTG AGGAGTAGAAA AAATCATAGAACACAAAGCATCCAAAACAACACCAGGAAACTTCTTTTCAATCGATCACTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGC ]
[+] EMBL CF308901 [ ATGGACTGAAGG G AG TAG AAA AAAGAACACAAAGCATCCAAAACAACACCAGGAAACTTCTTTTCAATCGATCACTCCACTGGTGAGTAGTGAGTGGCTAATGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAG ]
[+] EMBL CF309434 [ CTGAAGGAGTAGAAATTCCCTAGTAAATCAAAGAACACAAAGCATCCAAAACAACACCAGGAAACTTCTTTTCAATCGATCGCTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGCTCAGGAAGCATGGCCTCGCCGGCGCCGGCGCCGGCGCCGCCGCCAGCGTCGGCAAGAAGGACAAGTCGTCGCCGTCGTCGTCACCCAAGGACAAGGAGAAGACCAAGAGCAAGTTCCTCTCCTTCGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTGCTGATCAGTC ]
[+] EMBL CF316871 [ AATCAAAGAACACAAAGCATCCAAAACAACACCAGGAAACTTCTTTTCAATCGATCACTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGCT ]
[+] EMBL CF299589 [ AAAGCATCCAAAACAACACCAGGAAACTTCTTTTCAATCGATCACTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACCTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGCTCAGGAAGCATGGCCTTGCCGGCGCCGGCGCCGGCGCCGCCGCCAGCGTCGGCAAGAAGGACAAGTCGTCGCCGTCGTCGTCACCCAAGGACAAGGAGAAGACCAAGAGCAAGTTCCTCTCCTTCGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTGCTGATCAGTC ]
[+] EMBL CF303107 [ acgaggCAGGAAACTTCTTTTCAATCGATCACTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGCTCAGGAAGCAAGGCCTCGCCGGCGCCGG ]
[+] EMBL AK071051 [ ACTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGCTCAGGAAGCATGGCCTCGCCGGCGCCGGCGCCGGCGCCGCCGCCAGCGTCGGCAAGAAGGACAAGTCGTCGCCGTCGTCGTCACCCAAGGACAAGGAGAAGACCAAGAGCAAGTTCCTCTCCTTCGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTGCTGATCAGTCGGATCCCTGAAGATAGTTTTTTAGTGTGTGTACTGTTCCATTTGTGTTTGTCCCTCTTCCTCTCCTTCAGAAGAGGCAGCTAGCTAGCTTCATGTTTGGCTGGTCTTTTTGGCCATCTGTGCATG TCTGTAAACTTTATTGGAGTGAGGGGAAAAAAGAGCATAATTAGTTGCTCCATGTTGAGTTGTTAGAGTGGTTTCTTGTAAATGTAATTCAGGATCTCAGATGAGCAGACAATAAAAAC ]
[-] EMBL CF309435 [ CTCAGGAAGCATGGCTTCGCCGGCGCCGGCGCCGGCGCCGCCGCCAGCGTCGGCAAGAAGGACAAGTCGTCCCCGTCGTCGTCACCCAAGGACAAGGAGAAGACCAAGAGCAAGTTCCTCTCCTTCGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTGCTGATCAGTCGGATCCCTGAAGATAGTTTTTTAGTGTGTGTACTGTTCCATTTGTGTTTGTCCCTCTTCCTCTCCTTCAGAAGAGGCAGCTAGCTAGCTTCATGTTTGGCTGGTCTTTTTGGCCATCTGTGCAAGATAAATAAACTTTATTGGAGTGAGGGGAAAAAAGAGCATAATTAGTTGCTCCATGTTGAGTTGTTAGAGTGGTTTCTTGTAAATGTAATTCAGGATCTCAGATGAGCAGCCAATAAAAACACACTGTTCCAGGAGTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAACAC]
[-] EMBL CF308900 [ CAAGTTGTCGCCGTTGTTGTCCCCCAAGGACAAGGAGAAGACCAAGAGCAAGTTCCTTTCCTTTGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTGCTGATCAGTCGGATCCCTGAAGATAGTTTTTTAGTGTGTGGACTGTTCCATTTGGGTTTGTCCCTCTTCCTCTCCTTCAGAAAAGGCAGCTAGCTAGCTTCATGTTTGGCTGGTTTTTTTGGCCATCTGTGCATG TCTGTAAACTTTATTGGAGTGAGGGGAAAAAAGAGCATAATTAGTTGCTCCATGTTGAGTTGTTAGAGTGGTTTTTTGTAAATGTAATTCAGGATTTCAGATGAGCAGACAATAAAAACCCCCTGTTTCAGGA AAAAAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_15184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 853 fasta sequence
[GAATTAATCTGCACTTTCAGTTTCATTTTTGTGATTTGCTTTACACCGTTAGTTCGTTCTTCATCTTTAGGCTTGAGCTGTTGAGCAAGTGAGATGTCTGACTGGTTTATATGATCTCTCCCTGTTTGCAGGCCAAGCATCACGCTTCTCTATCCGCTGTAAGTACAGCCACGATTTTATCTACGGATATCTCATCGTTAGTAATTATAGTTTGGTTCATGTGCACTGTTCTTGTGCGTACTGGTAATCGACTGAGTGCAGGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCG-CCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAATTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAGTGTTCCCTGCAAAAAAAAGAAAAAAAA]
[+] EMBL AK100937 [GAATTAATCTGCACTTTCAGTTTCATTTTTGTGATTTGCTTTACACCGTTAGTTCGTTCTTCATCTTTAGGCTTGAGCTGTTGAGCAAGTGAGATGTCTGACTGGTTTATATGATCTCTCCCTGTTTGCAGGCCAAGCATCACGCTTCTCTATCCGCTGTAAGTACAGCCACGATTTTATCTACGGATATCTCATCGTTAGTAATTATAGTTTGGTTCATGTGCACTGTTCTTGTGCGTACTGGTAATCGACTGAGTGCAGGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCG CCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAATTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAG ]
[-] EMBL CF315909 [ CTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGGGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAGTGTTCCCTGCAAAAAAAAGAAAAAAAA]
consensusID : consensus_15184#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 841 fasta sequence
[GAGTAGAAAGTAGCTCTTTGCTTCTCCCTGAGGTCTCGTCTTCTTTTCAGCTCAGAAACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCGGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCTCAACTCCATTGCTGGGCCAAGCATCACGCTTCTCTATCCGCTGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCC-TTCATCTACAAGAAGCTC-GTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACTGCGTTACAGTGCTGAGTGTTCACTGCATTGATAATCCTGATCAACCGATAATCGATTTCGAAGAAATAATATTTAAAAAAAAAAAAAAAAA]
[+] EMBL CF315910 [GAGTAGAAAGTAGCTCTTTGCTTCTCCCTGAGGTCTCGTCTTCTTTTCAGCTCAGAAACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCGGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCTCAACTCCATTGCTGGGCCAAGCATCACGCTTCTCTATCCGCTGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCC TTCATCTACAAGAAGCTC GTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGGGCGAACCGGAAGCT ]
[+] EMBL CF305811 [ TTTCAGCTCAGAAACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCTGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCNCATCNCCTTTGCTGGGCCAAGCATCACGCTTCTCTATCCGCTGTACGCTTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCC TTCATCTACAAGAAGCTC GTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCG ]
[-] EMBL CA759580 [ TCTCTATCCGCTGTACGCGTCCATNTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCC TTCATTTACAAGAAGCTC GTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGGGGGGCCGCCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACTGCGTTACAGTGCTGAGTGTTCACTGCATTGATAATCCTGATCAACCGATAATCGATTTCGAAGAAATAATATTTAAAAAAAAAAAAAAAAA]
[+] EMBL BI796540 [ TACTGGATTCCGGT T GTATCC GTGAAGGT CTGTTCGTGGCGT GCT GTGCTCCC CAGTTCAAGGGCGCCTCCGTTCATCTACAAGAAGCTCTGTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGTCGGCACC CCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACAGCGTTACAGTGCTGAGTGTTCACTGCATTGATAATCCTGATCAACCGATAATCGATTTCGAAGAAATAATATTTTAAAAA ]
consensusID : consensus_15184#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence
[TCGGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCTCAACTCCATTGGTGGGCCAAGCATCACGCTTCTCTATCCGCTGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAG-CTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACC-GTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACAGCGTTACAGTGCTGAGTGTTCCCTGCATTGATAAAAAAAAAAAA]
[-] EMBL CA759581 [TCGGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCTCAACTCCATTGGTGGGCCAAGCATCACGCTTCTCTATCCGCTGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAG CTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACC GTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACAGCGTTACAGTGCTGAGTGTTCCCTGCATTGATAAAAAAAAAAAA]
[+] EMBL BI795009 [ TGTACGCGTCCATCTGC CGATGGAGAGCCCGACCAAGGTTGACGACGA CA TTGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGAT GTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAGTCTCAGGAAGTACCGCGCCA GGGCGGC CC CCGCCACC GTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACAGCGTTACAaaaaaaa ]
[+] EMBL AU069752 [ CGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAG CTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCC CAGCCGGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAaaaa ]
consensusID : consensus_15184#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[GGATCCAGAGAGTAGCACTTTGCTTCTCCCTGAGGTCTCGTCTTCTTTTCAGCTCAGAAACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCGGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAG]
[+] EMBL AK064041 [GGATCCAGAGAGTAGCACTTTGCTTCTCCCTGAGGTCTCGTCTTCTTTTCAGCTCAGAAACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCGGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAG]
consensusID : consensus_15184#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence
[GACACTGATATGGACTGAAGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAGTGTTCACTGCATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGCCTTGCCGTTCCTTACCAAAGGGAAAATTCACGGCCG]
[+] EMBL CF315963 [GACACTGATATGGACTGAAGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAGTGTTCACTGCATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGCCTTGCCGTTCCTTACCAAAGGGAAAATTCACGGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15184#2 ------------------------------------------------------------
consensus_15184#4 ------------------------------------------------------------
consensus_15184#3 ------------------------------------------------------------
consensus_15184#1 GAATTAATCTGCACTTTCAGTTTCATTTTTGTGATTTGCTTTACACCGTTAGTTCGTTCT 60
consensus_15184#5 ------------------------------------------------------------
consensus_15184#0 -----------GACACTGACATGGACTGAAGGAGTAGAAATAGAAATCAAAGAACACAAA 49
consensus_15184#2 ---GAGTAGAAAGTAGCTCTTTGCTTCTCCCTGAGGTCTCGTCTTCTTTTCAGCTCAGAA 57
consensus_15184#4 -GGATCCAGAGAGTAGCACTTTGCTTCTCCCTGAGGTCTCGTCTTCTTTTCAGCTCAGAA 59
consensus_15184#3 ------------------------------------------------------------
consensus_15184#1 TCATCTTTAGGCTTGAGCTGTTGAGCAAGTGAGATGTCTGACTGGTTTATATGATCTCTC 120
consensus_15184#5 ------------------------------------------------------------
consensus_15184#0 GCATCCAAAACAACACCAGGAAACTTCTTTTCAA----TCGATCACTCCACTGGTGAGTA 105
consensus_15184#2 ACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCGGGA 117
consensus_15184#4 ACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCGGGA 119
consensus_15184#3 ------------------------------------------------------TCGGGA 6
consensus_15184#1 CCTGTTTGCAGGCCAAGCATCACGCTTCTCTATCCGCTGTAAGTACAGCCACGATTTTAT 180
consensus_15184#5 ------------------------------------------------------------
consensus_15184#0 GTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTT 165
consensus_15184#2 GAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCTCAACTCCATTGCTGGGCC 177
consensus_15184#4 GAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCC---------------------- 157
consensus_15184#3 GAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCTCAACTCCATTGGTGGGCC 66
consensus_15184#1 CTACGGATATCTCATCGTTAGTAATTATAGTTTGGTTCATGTGCACTGTTCTTGTGCGTA 240
consensus_15184#5 ------------------------------------------------------------
consensus_15184#0 CAGAAGAT-CATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCC 224
consensus_15184#2 AAGCATCACGCTTCTCTATCCGCTGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAA 237
consensus_15184#4 ------------------------------------------------------------
consensus_15184#3 AAGCATCACGCTTCTCTATCCGCTGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAA 126
consensus_15184#1 CTGGTAATCGACTGAGTGCAG---GTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAA 297
consensus_15184#5 ------------------------------------------------------------
consensus_15184#0 TACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAA 284
consensus_15184#2 GGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGA 297
consensus_15184#4 -----------------------------------------------------TCCTGGA 164
consensus_15184#3 GGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGA 186
consensus_15184#1 GGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGA 357
consensus_15184#5 ------------------------------------------------------------
consensus_15184#0 GCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGA 344
consensus_15184#2 GATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTT 357
consensus_15184#4 GATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTT 224
consensus_15184#3 GATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTT 246
consensus_15184#1 GATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTT 417
consensus_15184#5 ------------------------------------------------------------
consensus_15184#0 GATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTT 404
consensus_15184#2 CGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGT 417
consensus_15184#4 CGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGT 284
consensus_15184#3 CGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGT 306
consensus_15184#1 CGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGT 477
consensus_15184#5 ------------------------------------------------------------
consensus_15184#0 CATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGT 464
consensus_15184#2 CAGGGAGCAGCTCAGGAAGTA---CCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGC 474
consensus_15184#4 CAGGGAGCAGCTCAGGAAGTA---CCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGC 341
consensus_15184#3 CAGGGAGCAGCTCAGGAAGTA---CCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGC 363
consensus_15184#1 CAGGGAGCAGCTCAGGAAGTA---CCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGC 534
consensus_15184#5 ------------------------------------------------------------
consensus_15184#0 CAGGGAGCAGCTCAGGAAGCATGGCCTCGCCGGCGCCGGCGCCGGCGCCGCCGCCAGCGT 524
consensus_15184#2 CGGCGAAGATCACAAGGTGCA-----CATTGCCAAGGCTGAGCACGATCATGGGCACTGA 529
consensus_15184#4 CGGCGAAGATCACAAGGTGCA-----CATTGCCAAGGCTGAGCACGATCATGGGCACTGA 396
consensus_15184#3 CGGCGAAGATCACAAGGTGCA-----CATTGCCAAGGCTGAGCACGATCATGGGCACTGA 418
consensus_15184#1 CGGCGAAGATCACAAGGTGCA-----CATTGCCAAGGCTGAGCACGATCATGGGCACTGA 589
consensus_15184#5 ------------------------------------------------------------
consensus_15184#0 CGGCAAGAAGGACAAGTCGTCGCCGTCGTCGTCACCCAAGGACAAGGAGAAGACCAAGAG 584
consensus_15184#2 TGGGGACATCAGGGGAGATGATCT---GAGCGAACCGGAAGCTTGGCTGCTCTAGATTAA 586
consensus_15184#4 TGGGGACATCAGGGGAGATGATCT---GAGCGAACCGGAAGCTTGGCTGCTCTAGATTAA 453
consensus_15184#3 TGGGGACATCAGGGGAGATGATCT---GAGCGAACCGGAAGCTTGGCTGCTCTAGATTAA 475
consensus_15184#1 TGGGGACATCAGGGGAGATGATCT---GAGCGAACCGGAAGCTTGGCTGCTCTAGATTAA 646
consensus_15184#5 ------------------------------------------------------------
consensus_15184#0 CAAGTTCCTCTCCTTCGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTG 644
consensus_15184#2 TTGCT------GATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGT 640
consensus_15184#4 TTGCT------GATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGT 507
consensus_15184#3 TTGCT------GATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGT 529
consensus_15184#1 TTGCT------GATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGT 700
consensus_15184#5 ----------------------------------GACACTGATATGGACTGA--AGGAGT 24
consensus_15184#0 CTGATCAGTCGGATCCCTGAAGATAGTTTTTTAGTGTG-TGTACTGTTCCATTTGTGTTT 703
** * * *
consensus_15184#2 ACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTC 700
consensus_15184#4 ACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTC 567
consensus_15184#3 ACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTC 589
consensus_15184#1 ACCCCATATGTACTATATCTGAAATCTGAATTGTGAAAGATTAGCTACTACTGTAGTTTC 760
consensus_15184#5 ACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTC 84
consensus_15184#0 GTCCCTCTTCCTCTCCTTCAGAAGAGGCAGCTAGCTAGCTTCATGTTTGGCTGGTCTTTT 763
*** * ** ** *** * * * * * * *** ***
consensus_15184#2 TGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACTGCGTTACAG- 759
consensus_15184#4 TGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAG- 626
consensus_15184#3 TGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACAGCGTTACAG- 648
consensus_15184#1 TGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAG- 819
consensus_15184#5 TGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAG- 143
consensus_15184#0 TGGCCATCTGTGCATGTCTGTAAACTTTATTGGAGTGAGGGGAAAAAAGAGCATAATTAG 823
** * * **** * * ** **** ** * ** ** * *
consensus_15184#2 -TGCTGAGTGTTCACTGCATTGATAATCCTGATCAACCGATAATCGATTTCGAAGAAATA 818
consensus_15184#4 -TGCTGAG---------------------------------------------------- 633
consensus_15184#3 -TGCTGAGTGTTCCCTGCATTGATAAAAAAAAAAAA------------------------ 683
consensus_15184#1 -TGCTGAGTGTTCCCTGCA-----AAAAAAAGAAAAAAAA-------------------- 853
consensus_15184#5 -TGCTGAGTGTTCACTGCATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 202
consensus_15184#0 TTGCTCCATGTTGAGTTGTTAGAGTGGTTTCTTGTAAATGTAATTCAGGATCTCAGATGA 883
****
consensus_15184#2 ATATTTAAAAAAAAAAAAAAAAA------------------------------------- 841
consensus_15184#4 ------------------------------------------------------------
consensus_15184#3 ------------------------------------------------------------
consensus_15184#1 ------------------------------------------------------------
consensus_15184#5 AAAAAAAAAAAAAAAACCACTGCCTTGCCGTTCCTTACCAAAGGGAAAATTCACGGCCG- 261
consensus_15184#0 GCAGACAATAAAAACACACTGTTCCAGGAGTGCCCAAAAAAAAAAAAAAAAAAAAAAAAA 943
consensus_15184#2 -----
consensus_15184#4 -----
consensus_15184#3 -----
consensus_15184#1 -----
consensus_15184#5 -----
consensus_15184#0 AACAC 948
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||