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Oryza sativa
cluster # 15194 cluster # 15194       Sequences # 20       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15194#0 length = 1166 sequences # 17  
consensus_15194#1 length = 235 sequences # 2  
consensus_15194#2 length = 84 sequences # 1  

consensusID : consensus_15194#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 1166
fasta sequence
                              [ATCAAGTCAACAACAACTTTTTGCAACCCT-AGCTAGCTTGCATACTTAGTTAGCTATACTATACTACTCTTCTTCTTCTTCTTCTCTTCTTCTTCATTGGATCAAGCAAGGAGAGAGTAATTAATTAAGTAGGCAATCATGTGTGAGGGCGAGAAGAAGAAGGACTCGTCAAGCGGCGCGCTCTACTGCGTCAACCTCGCCCTCCGCATCGTCGTCCTC-GGGCTCGCCGTCGCCGCGGCGGCGC-TCATGGCGACGGCGAGCCAGTGCACCATCTTCCTCTACTACGGCGGCCCTCTCCACACCATCACCTACAAGGACTTTGGCCCCTTCGTGTATTTGGTGGTGGCGAGCTCGATCGGGGCGTTCATGGAGGCGATCGCCATCTTCCTGACCATCTGCAAGAAGAAGGACGGCACGCCGGCGAAGGTGCTCCTGCCGCTGCTGGACGCCGCCGTGCCGGTGCTGCTCTACTCGGCGACGGCCGCCGCGTTCGCCGCCGGCGACATGTCGTACTGCGCCGTGGGGAAGCGCGTCGGCGTCTGCACCACCGCC-GCCGCCGGCAACTTCTGCAACCAGGTGCACATTGCCATGTACGTCTCCCTCGCCGCCGGCGTCGCCCTGC-TCGTCGCCGAGATCGTC-AAGCACTGGCCGGAC-TCCGGGAA-GAAGAAGGAAGGCGGCGGCGGCGGATGCGGGTCGGACTCCGACTCCGACAAGTCAACCCCTTGCCACCATGGCTGCCATAGCAAGCATTAGTCGAGCTCTCTAGCTAGGGTACATTTAATTCTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTCTCAAACAAAAGAAAACC-AAA-AAAAAAAAAACAAGCCATGCATGCATGCATTTCTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATGGAAAACTTGTTGTAATTAATTAATGTTTGTGTGTGTCACTGTGTTTTATTTTGTTTGGTTTTTGCTTGATTAATTACCATGCATGGATCATGGATGCAGATCGACTTGCAATGAAATTTTCCATATTACATTAGCATGTGATATATATAATTAATACTGATGTAATGTAATTAAGTGTGTGATGGAATCTGTAATATGTGAAAAAAAAA]

[+] EMBL AK060103             [ATCAAGTCAACAACAACTTTTTGCAACCCT AGCTAGCTTGCATACTTAGTTAGCTATACTATACTACTCTTCTTCTTCTTCTTCTCTTCTTCTTCATTGGATCAAGCAAGGAGAGAGTAATTAATTAAGTAGGCAATCATGTGTGAGGGCGAGAAGAAGAAGGACTCGTCAAGCGGCGCGCTCTACTGTGTCAACCTCGCCCTCCGCATCGTCGTCCTC GGGCTCGCCGTCGCCGCGGCGGCGC TCATGGCGACGGCGAGCCAGTGCACCATCTTCCTCTACTACGGCGGCCCTCTCCACACCATCACCTACAAGGACTTTGGCCCCTTCGTGTATTTGGTGGTGGCGAGCTCGATCGGGGCGTTCATGGAGGCGATCGCCATCTTCCTGACCATCTGCAAGAAGAAGGACGGCACGCCGGCGAAGGTGCTCCTGCCGCTGCTGGACGCCGCCGTGCCGGTGCTGCTCTACTCGGCGACGGCCGCCGCGTTCGCCGCCGGCGACATGTCGTACTGCGCCGTGGGGAAGCGCGTCGGCGTCTGCACCACCGCC GCCGCCGGCAACTTCTGCAACCAGGTGCACATTGCCATGTACGTCTCCCTCGCCGCCGGCGTCGCCCTGC TCATCGCCGAGATCGTC AAGCACTGGCCGGAC TCCGGGAA GAAGAAGGAAGGCGGCGGCGGCGGATGCGGGTCGGACTCCGACTCCGACAAGTCAACCCCTTGCCACCATGGCTGCCATAGCAAGCATTAGTCGAGCTCTCTAGCTAGGGTACATTTAATTCTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTCTCAAACAAAAGAAAACC AAA AAAAAAAAAACAAGCCATGCATGCATGCATTTCTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATGGAAAACTTGTTGTAATTAATTAATGTT                                                                                                                                                                                      ]
[+] EMBL AU065409             [      TCAACAACAACTTTTTGCAACCCT AGCTAGCTTGCATACTTAGTTAGCTATACTATACTACTCTTCTTCTTCTTCTTCTCTTCTTCTTCATTGGATCAAGCAAGGAGAGAGTAATTAATTAAGTAGGCAATCATGTGTGAGGGCGAGAAGAAGAAGGACTCGTCAAGCGGCGCGCTCTACTGCGTCAACCTCGCCCTCCGCATCGTCGTCCTC GGGCTCGCCGTCGCCGCGG GGCGC TCATGGCGACGGCGAG CAGTGCACCATCTTCCTCTACTACGGCGGCCCTCTCCACANCATCANCTACANGGACTTTGGCCCCTTCGTGTATTTGGTGGTGGCGAGCTCGATCGGGGCGTTCATGGAGGCGATCG CATCTTCCTGACCATNT CAAGAAGAAGGACGGCACGCCGGCGAAGGTGCTCCTGCCG TNCTTGACGCCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSR2379A             [      TCAACAACAACTTTTTGCAACCCT AGCTAGCTTGCATACTTAGTTAGCTATACTATACTACTCTTCTTCTTCTTCTTCTCTTCTTCTTCATTGGATCAAGCAAGGAGAGAGTAATTAATTAAGTAGGCAATCATGTGTGAGGGCGAGAAGAAGAAGGACTCGTCAAGCGGCGCGCTCTACTGCGTCAACCTCGCCCTCCGCATCGTCGTCCTC GNGNTCGCCGTCGCCGCGGCGGCGCTTCATGGCGACGGCGAG CAGTGCACCATCTTCCTCTACTACGGCGGCCCTCTCCACACCATCACCTACAAGGNCTTTGGCCCCTTCGTGTATTTGGTGGTGGCGAGCTCGATCGGGGCGTTCATGGAGGCGATCG CATCTTCCTGACCATCTGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSR0736A             [              AACTTTTTGCAACCCT AGCTAGCTTGCATACTTAGTTAGCTATACTATACTACTCTTCTTCTTCTTCTTCTCTTCTTCTTCATTGGATCAAGCAAGGAGAGAGTAATTAATTAAGTAGGCAATCATGTGTGAGGGCGAGAAGAAGAAGGACTCGTCAAGCGGCGCGCTCTACTGCGTCAACCTCGCCCTCCGCATCGTCGTCCTC NNGNTCGCCGTCGCCGCGGCGGCGC TCATGGCGNCGGCGAGCCAGTNCACCATCTTCCTCTACTACGGCGGCCCTCTCCACACCATCACCTACAAGGNCTTTGGCCCCTTCGTGTATTTGGTGGTGGCGAGCTCGATCGGGGCGTTCATGGAGGCGATCCGCATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB649084             [                CTTTTTGCAACCCT AGCTAGCTTGCATACTTAGTTAGCTATACTATACTACTCTTCTTCTTCTTCTTCTCTTCTTCTTCATTGGATCAAGCAAGGAGAGAGTAATTAATTAAGTAGGCAATCATGTGTGAGGGCGAGAAGAAGAAGGACTCGTCAAGCGGCGCGCTCTACTGCGTCAACCTCGCCCTCCGCATCGTCGTCCTC GGGCTCGCCGACNACGCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB644889             [                CTTTTTGCAACCCT AGCTAGCTTGCATACTTAGTTAGCTATACTATACTACTCTTCTTCTTCTTCTTCTCTTCTTCTTCATTGGATCAAGCAAGGAGAGAGTAATTAATTAAGTAGGCAATCATGTGTGAGGGCGAGAAGAAGAAGGACTCGTCAAGCGGCGCGCTCTACTGCGTCAACCTCGCCCTCCGCATCGTCGTCCTC GGGCTCGCCGTCGCCGCGGCGGCGC TCATGGCGACGGCGAGCCAGTGCAGCATCTTCGTCTACTACTGCGGGCCTCTCCACACCATCACCTATAAGGACTTTGGCCCCTTCTTGTATTTGGCGGAGGCCAGCTCGATCTGGGCGATCATGGAGGCGATCGCGGTCTTCCTGACCATCTGGGAGAAGAACGACGGCACGCCGGCCAAGGTGCTCCTGCCGCTGCTGGACGCCGCCGTGCCGATGCTGATCTACTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSS1116A             [                    tnGCAACTTTNAGCTAGCTTGCATANTTAGTTAGCTATACTATACTACTCTTCTNCTNCTTCTTCTCTTCTTCTTCATTGGATCAAGCAAGGAGAGAGTAATTAATTAAGTAGGCAATCATGTGTGAGGGCGAGAAGANGNAGGTCTCGNCAAGCGGCGCGCTCTACTNCGTCAACCTCGn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA755529             [                        AACCCT AGCTAGCTTGCATACTTAGTTAGCTATACTATACTACTCTTCTTCTTCTTCTTCTCTTCTTCTTCATTGGATCAAGCAAGGAGAGAGTAATTAATTAAGTAGGCAATCATGTGTGAGGGCGAGAAGAAGAAGGACTCGTCAAGCGGCGCGCTCTACTGCGTCAACCTCGCCCTCCGCATCGTCGTCCTCGGGGCTCGCCGTCGCCGCGGCGGCGC TCATGGCGACGGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OS1321945            [                                                                                                                                                                                                                                                                                                                                      CCCCTTCGTGTATTTGGTGGTGGCGAGCTCGATCGGGGCGTTCATGGAGGCGATCGCCATCTTCCTGACCATCTGCAAGAAGAAGGACGGCACGCCGGCGAAGGTGCTCCTGCCGCTGCTGGACGCCGCCGTGCCGGTGCTGCTCTACTCGGCGACGGCCGCCGCGTTCGCCGCTGG GACATGTCGTACTGCGCCGTGGGGAAGCGCGTCGGCGTCTGCACCACCGCC GCCGCCGGAAACTTCTGCAACCAGGTGCACATTGCCATGTACGTCTCCCTCGNCGCCGGGTTCGCCCTGCTTCGTCGCNGAGATCGTCAAAGAACTGGCCGGACTTCNGGGAAGGAAGAAGGAAGGCGGCGGCGGNGGATTCGGGgt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB644890             [                                                                                                                                                                                                                                                                                                                                                                                                                     AAGAAGGACGGCACGCCGGCGAAGGTGCTCCTGCCGCTGCTGGACGCCGCCGTGCCGGTGCTGCTCTACTCGGCGACGGCCGCCGCGTTCGCCGCCGGCGACATGTCGTACTGCGCCGTGGGGAAGCGCGTCGGCGTTTGCACCACCGCC GCCGCCGGCAACTTTTGCAACCAGGTGCACATTGCCATGTACGTTTCCCTCGCCGCCGGGGTCGCCCTGT TCGTCGCCGAGATCGTC AAGCACTGGCCGGAC TCCGGGAA GAAGAAGGAAGGCGGCGGCGGCGGATGCGGGTCGGACTCCGACTCCGACAAGTCAACCCCTTGCCACCATGGCTGCCATAGCAAGCATTAGTGGAGCTCTCTAGCTAGGGTACATTTAATTCTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTTTCAAACAAAAGAAACCC AAA AAAAAAAAAACAAGCCATGCATGCATGCATTTTTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATGGAAAACTTGTTGTAATTAAGGAATGTTTGTGTGTGTCACT                                                                                                                                                                         ]
[+] EMBL AU101635             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GCGACATGTCGTACTGCCCCGTGGGAAAGCGCGTCGGCGTNTGCACCACCGCCNGCCGCCGGCAACTTCTGCAACCAGGTGCACATTGCCATGTACGTCTCCCTCGCCGCCGGCGTCGCCCTGC TCGTCGCCGAGATCGTC AAGCACTGGCCGGAC TCCGGGAA GAAGAAGGAAGGCGGCGGCGGCGGATGCGGGTCGGACTCCGACTCCGACAAGTCAACCCCTTGCCACCATGGCTGCCATAGCAAGCATTAGTCGAGCTCTCTAGCTAGGGTACATTTAATTCTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTCTCAAACAAAAGAAAACC AAA AAAAAAAAAACAAGCCATGCATGCATGCATTTCTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATGGAAAACTTGTTGTAATTAATTAATGTTTGTGTGTGTCACTGTGTTTTATTTTGTTTGGTTTTTGCTTGATTAATTACCATGCATGGATCATGGATGCAGATCGACTTGCAATGAAATTTTCCATATTACATTAGCATGTGATATATATAATTAATACTGATGTAATGTAATTAAGTGTGTGATGGAATCTGTAATATGTGAAAAAAAAA]
[+] EMBL AU161596             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AA GAAGAAGGAAGGCGGCGGCGGCGGATGCGGGTCGGACTCCGACTCCGACAAGTCAACCCCTTGCCACCATGGCTGCCATAGCAAGCATTAGTCGAGCTCTCTAGCTAGGGTACATTTAATTCTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTCTCAAACAAAAGAAAACCAAAA AAAAAAAAAACAAGCCATGCATGCATGCATTTCTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATGGAAAACTTGTTGTAATTAATTAATGTTTGTGTGTGTCACTGTGTTTTATTTTGTTTGGTTTTTGCTTGATTAATTACCATGCATGGATCATGGATGCAGATCGACTTGCAATGAAATTTTCCATATTACATTAGCATGTGATATAaaaa                                                            ]
[+] EMBL AU066310             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     tcgtcaaGCGGCGGCGGATGCGGGTCGGACTCCGACTCCGACAAGTCAACCCCTTGCCACCATGGCTGCCATAGCAAGCATTAGTCGAGCTCTCTAGCTAGGGTACATTTAATTCTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTCTCAAACAAAAGAAAACC AAA AAAAAAAAAACAAGCCATGCATGCATGCATTTCTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATGGAAAACTTGTTGTAATTAATTAATGTTTGTGTGTG                                                                                                                                                                              ]
[+] EMBL AU066305             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     tcgtcaaGCGGCGGCGGATGCGGGTCGGACTCCGACTCCGACAAGTCAACCCCTTGCCACCATGGCTGCCATAGCAAGCATTAGTCGAGCTCTCTAGCTAGGGTACATTTAATTCTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTCTCAAACATAAGAAANCC AAAGGTNGNNNAAACAAGCCATGCATGCATGCATTTCTCATGAGAGGCCAGTAATATAATCAAGNGGC                                                                                                                                                                                                                                     ]
[+] EMBL AU197530             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     tcgtcaaGCGGCGGCGGATGCGGGTCGGACTCCGACTCCGACAAGTCAACCCCTTGCCACCATGGCTGCCATAGCAAGCATTAGTCGAGCTCTCTAGCTAGGGTACATTTAATTCTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTCTCAAACAAAAGAAAACC AAA AAAAAAAAAACAAGCCATGCATGCATGCATTTCTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATGGAAAACTTGTTGTAATTAATTAATGTTTGTGTGTGTCAaaaaa                                                                                                                                                                      ]
[+] EMBL AU058137             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     tcgtcaaGCGGCGGCGGATGCGGGTCGGACTCCGACTCCGACAAGTCAACCCCTTGCCACCATGGCTGCCATAGCAAGCATTAGTCGAGCTCTCTAGCTAGGGTACATTTAATTCTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTCTCAAACAAAAGAAAACC AAA AAAAAAAAAACAAGCCATGCATGCATGCATTTCTCATGAGAGGCCAGNAATATAATCANGTGGCCTAGCTATATTTGTATCATGGAAAACTTGTTGTAATTAATTAATGTTTGTGTGTGTCAaaaaa                                                                                                                                                                      ]
[+] EMBL AU184062             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTTAATTNTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTNTCAAACAAAAGAAAACC AAA AAAAAAAAAACAAGCCATGCATGCATGCATTTTTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATGGAAAACTTGTTGTAATTAATTAATGTTTGTGTGTGTCNCTGTGTTTTATTTTGTTTGGTTTTTGCTTGATTAATTACCATGCATGGATCATGGATGCAGATCGACTTGCAATGAAATTTTCCATATTACATTAGCATGTGATATATATAATTAATACTGATGTAATGTAATTAAGTGTGTGATGGAATNTGTAATATGTGAAAAAAAAA]


>consensus_15194#0 ATCAAGTCAACAACAACTTTTTGCAACCCTAGCTAGCTTGCATACTTAGTTAGCTATACT ATACTACTCTTCTTCTTCTTCTTCTCTTCTTCTTCATTGGATCAAGCAAGGAGAGAGTAA TTAATTAAGTAGGCAATCATGTGTGAGGGCGAGAAGAAGAAGGACTCGTCAAGCGGCGCG CTCTACTGCGTCAACCTCGCCCTCCGCATCGTCGTCCTCGGGCTCGCCGTCGCCGCGGCG GCGCTCATGGCGACGGCGAGCCAGTGCACCATCTTCCTCTACTACGGCGGCCCTCTCCAC ACCATCACCTACAAGGACTTTGGCCCCTTCGTGTATTTGGTGGTGGCGAGCTCGATCGGG GCGTTCATGGAGGCGATCGCCATCTTCCTGACCATCTGCAAGAAGAAGGACGGCACGCCG GCGAAGGTGCTCCTGCCGCTGCTGGACGCCGCCGTGCCGGTGCTGCTCTACTCGGCGACG GCCGCCGCGTTCGCCGCCGGCGACATGTCGTACTGCGCCGTGGGGAAGCGCGTCGGCGTC TGCACCACCGCCGCCGCCGGCAACTTCTGCAACCAGGTGCACATTGCCATGTACGTCTCC CTCGCCGCCGGCGTCGCCCTGCTCGTCGCCGAGATCGTCAAGCACTGGCCGGACTCCGGG AAGAAGAAGGAAGGCGGCGGCGGCGGATGCGGGTCGGACTCCGACTCCGACAAGTCAACC CCTTGCCACCATGGCTGCCATAGCAAGCATTAGTCGAGCTCTCTAGCTAGGGTACATTTA ATTCTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAAT TTTCCATATATTCTCAAACAAAAGAAAACCAAAAAAAAAAAAACAAGCCATGCATGCATG CATTTCTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATGGAA AACTTGTTGTAATTAATTAATGTTTGTGTGTGTCACTGTGTTTTATTTTGTTTGGTTTTT GCTTGATTAATTACCATGCATGGATCATGGATGCAGATCGACTTGCAATGAAATTTTCCA TATTACATTAGCATGTGATATATATAATTAATACTGATGTAATGTAATTAAGTGTGTGAT GGAATCTGTAATATGTGAAAAAAAAA



consensusID : consensus_15194#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 235
fasta sequence
                              [TTTAATTNTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTTTCNAACAAAAGAAAACCNAAAAAAAAAAAACAAGCCATGCATGCATGCATTTTTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATGGAAAACTTGTTGTAATTAATTAATGTTTGTGTGTGTCCAAAAAAAAAAAAAAAA]

[+] EMBL AU184472             [TTTAATTNTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTTTCNAACAAAAGAAAACCNAAAAAAAAAAAACAAGCCATGCATGCATGCATTTTTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATGGAAAACTTGTTGTAATTAATTAATGTTTGTGTGTGTCCAAAAAAAAAAAAAAAA]
[+] EMBL AU184709             [      TNTATAATCGAGAAATTTATNCGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTNTCNAACAAAAGAAAACCNAAAAAAAAAAAACAAGCCATGCATGCATGCATTTTTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATGGAAAACTTGTTGTAATTAATTAATGTTTGTGTGTGTCNAAAAAAAAAAAAAAAA]


>consensus_15194#1 TTTAATTNTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGAT TAATTTTCCATATATTTTCNAACAAAAGAAAACCNAAAAAAAAAAAACAAGCCATGCATG CATGCATTTTTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCAT GGAAAACTTGTTGTAATTAATTAATGTTTGTGTGTGTCCAAAAAAAAAAAAAAAA



consensusID : consensus_15194#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 84
fasta sequence
                              [CGCGCTCTACTGCGTCAACCTCGTCCTCCGCATCATCGTCCTCGGGCTCGCCGCCGCCGCGCGAATCATGGCGACGCGAGCCAG]

[+] EMBL D43527               [CGCGCTCTACTGCGTCAACCTCGTCCTCCGCATCATCGTCCTCGGGCTCGCCGCCGCCGCGCGAATCATGGCGACGCGAGCCAG]


>consensus_15194#2 CGCGCTCTACTGCGTCAACCTCGTCCTCCGCATCATCGTCCTCGGGCTCGCCGCCGCCGC GCGAATCATGGCGACGCGAGCCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15194#0      ATCAAGTCAACAACAACTTTTTGCAACCCTAGCTAGCTTGCATACTTAGTTAGCTATACT 60
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      ATACTACTCTTCTTCTTCTTCTTCTCTTCTTCTTCATTGGATCAAGCAAGGAGAGAGTAA 120
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      TTAATTAAGTAGGCAATCATGTGTGAGGGCGAGAAGAAGAAGGACTCGTCAAGCGGCGCG 180
consensus_15194#2      --------------------------------------------------------CGCG 4
consensus_15194#1      -----------------------------TTTAATTNTATAATCGAGAAATTTATACGAG 31
                                                                               ** *

consensus_15194#0      CTCTACTGCGTCAACC--TCGCCCTCCGCATCGTCGTCCTCGGGCTCGCCGTCGCCGCGG 238
consensus_15194#2      CTCTACTGCGTCAACC--TCGTCCTCCGCATCATCGTCCTCGGGCTCGCCGCCGCCGCGC 62
consensus_15194#1      ATTT-TTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTTTCNAACAA-AAGA 89
                        * *  *   * **    *** *    *  *  *  ***      *  *   *     * 

consensus_15194#0      CGGCGCTCATGGCGACGGCGAGCCAGTGCACCATCTTCCTCTACTACGGCGGCCCTCTCC 298
consensus_15194#2      GAA---TCATGGCGACG-CGAGCCAG---------------------------------- 84
consensus_15194#1      AAACCNAAAAAAAAAAAACAAGCCATGCATGCATGCATTTTTCATGAGAGGCCAGTAATA 149
                               *     *   * *****                                   

consensus_15194#0      ACACCATCACCTACAAGGACTTTGGCCCCTTCGTGTATTTGGTGGTGGCGAGCTCGATCG 358
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      TAATCAAGTGGCCTAGCTATATTTGTATCATGGAAAACTTGTTGTAATTAATTAATGTTT 209
                                                                                   

consensus_15194#0      GGGCGTTCATGGAGGCGATCGCCATCTTCCTGACCATCTGCAAGAAGAAGGACGGCACGC 418
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      GTGTGTGTCCAAAAAAAAAAAAAAAA---------------------------------- 235
                                                                                   

consensus_15194#0      CGGCGAAGGTGCTCCTGCCGCTGCTGGACGCCGCCGTGCCGGTGCTGCTCTACTCGGCGA 478
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      CGGCCGCCGCGTTCGCCGCCGGCGACATGTCGTACTGCGCCGTGGGGAAGCGCGTCGGCG 538
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      TCTGCACCACCGCCGCCGCCGGCAACTTCTGCAACCAGGTGCACATTGCCATGTACGTCT 598
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      CCCTCGCCGCCGGCGTCGCCCTGCTCGTCGCCGAGATCGTCAAGCACTGGCCGGACTCCG 658
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      GGAAGAAGAAGGAAGGCGGCGGCGGCGGATGCGGGTCGGACTCCGACTCCGACAAGTCAA 718
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      CCCCTTGCCACCATGGCTGCCATAGCAAGCATTAGTCGAGCTCTCTAGCTAGGGTACATT 778
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      TAATTCTATAATCGAGAAATTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTA 838
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      ATTTTCCATATATTCTCAAACAAAAGAAAACCAAAAAAAAAAAAACAAGCCATGCATGCA 898
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      TGCATTTCTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATGG 958
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      AAAACTTGTTGTAATTAATTAATGTTTGTGTGTGTCACTGTGTTTTATTTTGTTTGGTTT 1018
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      TTGCTTGATTAATTACCATGCATGGATCATGGATGCAGATCGACTTGCAATGAAATTTTC 1078
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      CATATTACATTAGCATGTGATATATATAATTAATACTGATGTAATGTAATTAAGTGTGTG 1138
consensus_15194#2      ------------------------------------------------------------
consensus_15194#1      ------------------------------------------------------------
                                                                                   

consensus_15194#0      ATGGAATCTGTAATATGTGAAAAAAAAA 1166
consensus_15194#2      ----------------------------
consensus_15194#1      ----------------------------
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)