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Oryza sativa
cluster # 1520 cluster # 1520       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1520#0 length = 3079 sequences # 2  

consensusID : consensus_1520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 3079
fasta sequence
                              [AGCATAATCCTTAGCAACGCAGTTACAGAGGAAACCAAGCACCAGCTCCCACAGGCAGGCCTGCCTACATCCAGTCCAGCCGCTCACAAGTTTCTGAACTCATGAAGGAATGTGTTCCAACAGCAAAAGGGACACCTAGTGAGCATTAATACCAACAAGAACAACTCGGTAAAGGAACTGTGGTCTTGAGTATTTTGGACTAGTACTTGACAAATGTTCATCACACAATAAGAATAAATACAGCGAGTTGGGCCTTCTGTCTGGTTGTCTGAGAAGGGTTGAAGTAATTTGAAAGCTGTCTAAAAATTCACCCAAACAGAGAACTTCGGACAAGCGGCTCTATAGTAGTCTAACCCTAACCTCTCTCACCAATGAATGGCAGCAACAGCCTCAGCCCAGTTCCTCATTGTGCGAGGCTCCCCTGGCTGCACTGCCCGACTGGTCTTTCTCCAGGCTGCTCTAGATCTGGACTGGCGCACAGTGAGGCACAGGATGATCGATTGTGGCTCCAGATCAGGTGGCCCAACCATGGGAGGCCAGCTAGCACATCGGTGGCTTGTGGTAGACCTGCCAGCGAGTTAGCTTCCACAATGGCTGTGGTGGGGAACCAGCACATGGGCTTCAAGGTGAAGGAAAAGATCGAAGACAGGGTTGAAAGTGAAAAGATTGGTTAAAGGAGACACCTACAAACCGCGTGTTGAAGTGATGAAATGATAATGCATAGCGGTCCATGATTGAAAACCAATCGGGGTTCATTGAATAGAGAAACCCTGCTCTGTCATATGAGGAAGTTGCTTCGACGCTTACATGATCAGTGTACAGTGATCGTGGCTTTCAAATTGTGACAGAATTGAGTGGTACAAAACAGATAAATCCCTGTGTACACATTAAGCTTGATTGCATAGGTGATGCAACAGCAGTAATCTTTGATGCCCAGACAGATGTGAGAGTGGAAACAGGAAGTCAGATGGCCATGTGATATCAAGAGGAAAGCTGGATACATATACACAGTGCCCTTTCTTTGGACTGGCTTGCTCTACTCAAAGGAGGTAATTTCGCACAAAAGGCAACAGCAGAGATGGTTCACATCAGAGCACTGATAACCAGCCAATCATGAAGTTGTACCTTGTGCTATTGAGCCCCGTCTGCCCATGAAGAACTCACGTGGATGGGATCCACCGCGCCACTGTTGGATCCAAAAGTACGCACTTGAGCAAGAAGTAAGTATCCTGGCGGCCGGGCCAGCTGGAGGACCGCCGGCGGCACCACAGCACCGAGGCCAGCCAGCCGGCGGCACAGTTGCTCCGGGCGCGGCGCGATTCCACTGCACGGCCAAGGCCGGGCAGCGCCGCGCCTCGGGCGCCATGTCGGAGGGTGGGATCATGTGGCTGTCACATGGGCAAGGCTAGCAGAGCTGGCAAACGGCGAGGCCCCCGTCGGCACCTTTGGGCTCTCCTTCGGGACAGCGACGGTAGCTGCTGGGGCCGGGATCCCCATTTATTCCTTCTGGCGTGGCCCCGCGGGCTGGGCGGGGCGGGCGCGTCGCCCTCTTGGGACGTCGCTCTCGCGGCCAGTGAGATCGCTGGAATGGGACACAGAGGCTGGAAAAAACAGGATGGAGGGAAGGATGGAAGGATCATTTCATTTTCTGTCATCCTGTTCTGGTGCCCGTAGCACCCCCGCCATGATTGCGCGTTGTTGGATACTCGGATTGGCTGCCTGTCCGTACGTGATTGGCACCACCCTACTGCGCCTCCATCTAGGAAGCTAATGTTGCGATGGTGGCTATGTATATCAAGACTCTCAAGTTCAACCCAAAACACGAAAATCTCACTAGAGTAAGCTATACCATCGCTGGACCTTAACCGAGTGGGCTGTTCGTCGTCGTGTGGATGACAGTTAAGATGACACAGCATGCCGCGTGCGTGTGTGCATGCACCAGCTTTGGGATGATCAGTGAGAAGGAATGTTTGAAAGCTGAAGTTGGGGACTAATCCTGTTGGAGCACCTGGCATGTTGCATCATCATTTGACAGTTACGGCCCTGCTGAATGAGGTTGATGCTTTCACCGATTTGGACCACATGGGAGAGCGAGCGAGCGTGTCTCCCGAAGCTTACACCGTGAAATTCTCCGATACAGCTCAGACCAGACCTGCTGATCCCCCTCCTACACCATAATGTCAAGACATACTCACATACATACGTACGTCCCACTTTGGCTGCATACATTCATACTACGTGGGCACCTGTCGTGTATAAGTATAAGCAGGCAATTAGAATGCTGCTGATCATTCATCATCTAATGAAGCTGGGCACTATAAGGCTGATATTGGAGGGCACCCGTCGTCCCTGTCACGTGTACGGACACGTGCACGTGGCACGTTGATTTTTGGGGTTCAAAGTACGATACAATGGGCATACTATAGCTTGTCCTAACAGTCGATGGGGGAACCTTGTGCAGTTGCTGACAGCGGACGGGGGCTGGCTGATGATAATCGTGTGCTGCAGTGTGCAAGTCGACAGAGGCTTCTGACGTATCCAGTTGCTGAATTGAAAAGGCCACGTACATCGATACAGATACAGCTAAGACATTATCGATGCTCTGCAAAATCAAATATATTCATTCCCCTTCCAGTGGCCACGCTCTTCTACACCTCTGGACAAGTTTAAGAAGCCGGCGAGGAAGAAGAAATATTGGAGGGCAATTGTTCTTTTGTGCTGGCCACAACGACCAGCTGCTAGTGAAAACTCAACTGTCTGCAGGGGATAAGAAGATGAAGCTCTGGACACATACAAGATAAAAAATGAAACTTAATGGTCTG-CAGGCGA-TCA-AACA-TA-TCA-TAGGAGCA-TGGAAGGAATGAGTGAAAACTCGGATGTAAGGTATTATCTCTTTAAACA-CA-GGGAAGGTTTCAAAGTTTTAATGAATAGCTTTATCTGATATTTGTATATAACTTGATTGATTTTTTTTCCTTTAAAGTTGCATCCCACTAGGTAGAGTATATGTCTGGTATTGTGATCAAAATGTTATATAATGCCAAAAGTAAAAAAAAAATGTTTATATTTCTTTCAGCAAAAAAAA]

[+] EMBL AK119377             [AGCATAATCCTTAGCAACGCAGTTACAGAGGAAACCAAGCACCAGCTCCCACAGGCAGGCCTGCCTACATCCAGTCCAGCCGCTCACAAGTTTCTGAACTCATGAAGGAATGTGTTCCAACAGCAAAAGGGACACCTAGTGAGCATTAATACCAACAAGAACAACTCGGTAAAGGAACTGTGGTCTTGAGTATTTTGGACTAGTACTTGACAAATGTTCATCACACAATAAGAATAAATACAGCGAGTTGGGCCTTCTGTCTGGTTGTCTGAGAAGGGTTGAAGTAATTTGAAAGCTGTCTAAAAATTCACCCAAACAGAGAACTTCGGACAAGCGGCTCTATAGTAGTCTAACCCTAACCTCTCTCACCAATGAATGGCAGCAACAGCCTCAGCCCAGTTCCTCATTGTGCGAGGCTCCCCTGGCTGCACTGCCCGACTGGTCTTTCTCCAGGCTGCTCTAGATCTGGACTGGCGCACAGTGAGGCACAGGATGATCGATTGTGGCTCCAGATCAGGTGGCCCAACCATGGGAGGCCAGCTAGCACATCGGTGGCTTGTGGTAGACCTGCCAGCGAGTTAGCTTCCACAATGGCTGTGGTGGGGAACCAGCACATGGGCTTCAAGGTGAAGGAAAAGATCGAAGACAGGGTTGAAAGTGAAAAGATTGGTTAAAGGAGACACCTACAAACCGCGTGTTGAAGTGATGAAATGATAATGCATAGCGGTCCATGATTGAAAACCAATCGGGGTTCATTGAATAGAGAAACCCTGCTCTGTCATATGAGGAAGTTGCTTCGACGCTTACATGATCAGTGTACAGTGATCGTGGCTTTCAAATTGTGACAGAATTGAGTGGTACAAAACAGATAAATCCCTGTGTACACATTAAGCTTGATTGCATAGGTGATGCAACAGCAGTAATCTTTGATGCCCAGACAGATGTGAGAGTGGAAACAGGAAGTCAGATGGCCATGTGATATCAAGAGGAAAGCTGGATACATATACACAGTGCCCTTTCTTTGGACTGGCTTGCTCTACTCAAAGGAGGTAATTTCGCACAAAAGGCAACAGCAGAGATGGTTCACATCAGAGCACTGATAACCAGCCAATCATGAAGTTGTACCTTGTGCTATTGAGCCCCGTCTGCCCATGAAGAACTCACGTGGATGGGATCCACCGCGCCACTGTTGGATCCAAAAGTACGCACTTGAGCAAGAAGTAAGTATCCTGGCGGCCGGGCCAGCTGGAGGACCGCCGGCGGCACCACAGCACCGAGGCCAGCCAGCCGGCGGCACAGTTGCTCCGGGCGCGGCGCGATTCCACTGCACGGCCAAGGCCGGGCAGCGCCGCGCCTCGGGCGCCATGTCGGAGGGTGGGATCATGTGGCTGTCACATGGGCAAGGCTAGCAGAGCTGGCAAACGGCGAGGCCCCCGTCGGCACCTTTGGGCTCTCCTTCGGGACAGCGACGGTAGCTGCTGGGGCCGGGATCCCCATTTATTCCTTCTGGCGTGGCCCCGCGGGCTGGGCGGGGCGGGCGCGTCGCCCTCTTGGGACGTCGCTCTCGCGGCCAGTGAGATCGCTGGAATGGGACACAGAGGCTGGAAAAAACAGGATGGAGGGAAGGATGGAAGGATCATTTCATTTTCTGTCATCCTGTTCTGGTGCCCGTAGCACCCCCGCCATGATTGCGCGTTGTTGGATACTCGGATTGGCTGCCTGTCCGTACGTGATTGGCACCACCCTACTGCGCCTCCATCTAGGAAGCTAATGTTGCGATGGTGGCTATGTATATCAAGACTCTCAAGTTCAACCCAAAACACGAAAATCTCACTAGAGTAAGCTATACCATCGCTGGACCTTAACCGAGTGGGCTGTTCGTCGTCGTGTGGATGACAGTTAAGATGACACAGCATGCCGCGTGCGTGTGTGCATGCACCAGCTTTGGGATGATCAGTGAGAAGGAATGTTTGAAAGCTGAAGTTGGGGACTAATCCTGTTGGAGCACCTGGCATGTTGCATCATCATTTGACAGTTACGGCCCTGCTGAATGAGGTTGATGCTTTCACCGATTTGGACCACATGGGAGAGCGAGCGAGCGTGTCTCCCGAAGCTTACACCGTGAAATTCTCCGATACAGCTCAGACCAGACCTGCTGATCCCCCTCCTACACCATAATGTCAAGACATACTCACATACATACGTACGTCCCACTTTGGCTGCATACATTCATACTACGTGGGCACCTGTCGTGTATAAGTATAAGCAGGCAATTAGAATGCTGCTGATCATTCATCATCTAATGAAGCTGGGCACTATAAGGCTGATATTGGAGGGCACCCGTCGTCCCTGTCACGTGTACGGACACGTGCACGTGGCACGTTGATTTTTGGGGTTCAAAGTACGATACAATGGGCATACTATAGCTTGTCCTAACAGTCGATGGGGGAACCTTGTGCAGTTGCTGACAGCGGACGGGGGCTGGCTGATGATAATCGTGTGCTGCAGTGTGCAAGTCGACAGAGGCTTCTGACGTATCCAGTTGCTGAATTGAAAAGGCCACGTACATCGATACAGATACAGCTAAGACATTATCGATGCTCTGCAAAATCAAATATATTCATTCCCCTTCCAGTGGCCACGCTCTTCTACACCTCTGGACAAGTTTAAGAAGCCGGCGAGGAAGAAGAAATATTGGAGGGCAATTGTTCTTTTGTGCTGGCCACAACGACCAGCTGCTAGTGAAAACTCAACTGTCTGCAGGGGATAAGAAGATGAAGCTCTGGACACATACAAGATAAAAAATGAAACTTAATGGTCTG CAGGCGA TCA AACA TA TCA TAGGAGCA TGGAAGGAATGAGTGAAAACTCGGATGTAAGGTATTATCTCTTTAAACA CA GGGAAGGTTTCAAAGTTTTAATGAATAGCTTTATCTGATATTTGTATATAACTTGATTGATTTTTTTTCCTTTAAAGTTGCATCCCACTAGGTAGAGTATATGTCTGGTATTGTGATCAAAATGTTATATAATGCCAAAAGTAAAAAAAAAATGTTTATAT                  ]
[+] EMBL BI805336             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tTGGTCTGCCCGGGGATTCACAACACTATTCACTAGGAGCACTGGAAGGAATGAGTGAAAACTCGGATGTAAGGTATTATCTCTTTAAACACCACGGGAAGGTTTCAAAGTTTTAATGAATAGCTTTATCTGATATTTGTATATAACTTGATTGATTTTTTTTCCTTTAAAGTTGCATCCCACTAGGTAGAGTATATGTCTGGTATTGTGATCAAAATGTTATATAATGCC AAAGTAAAAAAAAAATGTTTATATTTCTTTCAGCAAAAAAAA]


>consensus_1520#0 AGCATAATCCTTAGCAACGCAGTTACAGAGGAAACCAAGCACCAGCTCCCACAGGCAGGC CTGCCTACATCCAGTCCAGCCGCTCACAAGTTTCTGAACTCATGAAGGAATGTGTTCCAA CAGCAAAAGGGACACCTAGTGAGCATTAATACCAACAAGAACAACTCGGTAAAGGAACTG TGGTCTTGAGTATTTTGGACTAGTACTTGACAAATGTTCATCACACAATAAGAATAAATA CAGCGAGTTGGGCCTTCTGTCTGGTTGTCTGAGAAGGGTTGAAGTAATTTGAAAGCTGTC TAAAAATTCACCCAAACAGAGAACTTCGGACAAGCGGCTCTATAGTAGTCTAACCCTAAC CTCTCTCACCAATGAATGGCAGCAACAGCCTCAGCCCAGTTCCTCATTGTGCGAGGCTCC CCTGGCTGCACTGCCCGACTGGTCTTTCTCCAGGCTGCTCTAGATCTGGACTGGCGCACA GTGAGGCACAGGATGATCGATTGTGGCTCCAGATCAGGTGGCCCAACCATGGGAGGCCAG CTAGCACATCGGTGGCTTGTGGTAGACCTGCCAGCGAGTTAGCTTCCACAATGGCTGTGG TGGGGAACCAGCACATGGGCTTCAAGGTGAAGGAAAAGATCGAAGACAGGGTTGAAAGTG AAAAGATTGGTTAAAGGAGACACCTACAAACCGCGTGTTGAAGTGATGAAATGATAATGC ATAGCGGTCCATGATTGAAAACCAATCGGGGTTCATTGAATAGAGAAACCCTGCTCTGTC ATATGAGGAAGTTGCTTCGACGCTTACATGATCAGTGTACAGTGATCGTGGCTTTCAAAT TGTGACAGAATTGAGTGGTACAAAACAGATAAATCCCTGTGTACACATTAAGCTTGATTG CATAGGTGATGCAACAGCAGTAATCTTTGATGCCCAGACAGATGTGAGAGTGGAAACAGG AAGTCAGATGGCCATGTGATATCAAGAGGAAAGCTGGATACATATACACAGTGCCCTTTC TTTGGACTGGCTTGCTCTACTCAAAGGAGGTAATTTCGCACAAAAGGCAACAGCAGAGAT GGTTCACATCAGAGCACTGATAACCAGCCAATCATGAAGTTGTACCTTGTGCTATTGAGC CCCGTCTGCCCATGAAGAACTCACGTGGATGGGATCCACCGCGCCACTGTTGGATCCAAA AGTACGCACTTGAGCAAGAAGTAAGTATCCTGGCGGCCGGGCCAGCTGGAGGACCGCCGG CGGCACCACAGCACCGAGGCCAGCCAGCCGGCGGCACAGTTGCTCCGGGCGCGGCGCGAT TCCACTGCACGGCCAAGGCCGGGCAGCGCCGCGCCTCGGGCGCCATGTCGGAGGGTGGGA TCATGTGGCTGTCACATGGGCAAGGCTAGCAGAGCTGGCAAACGGCGAGGCCCCCGTCGG CACCTTTGGGCTCTCCTTCGGGACAGCGACGGTAGCTGCTGGGGCCGGGATCCCCATTTA TTCCTTCTGGCGTGGCCCCGCGGGCTGGGCGGGGCGGGCGCGTCGCCCTCTTGGGACGTC GCTCTCGCGGCCAGTGAGATCGCTGGAATGGGACACAGAGGCTGGAAAAAACAGGATGGA GGGAAGGATGGAAGGATCATTTCATTTTCTGTCATCCTGTTCTGGTGCCCGTAGCACCCC CGCCATGATTGCGCGTTGTTGGATACTCGGATTGGCTGCCTGTCCGTACGTGATTGGCAC CACCCTACTGCGCCTCCATCTAGGAAGCTAATGTTGCGATGGTGGCTATGTATATCAAGA CTCTCAAGTTCAACCCAAAACACGAAAATCTCACTAGAGTAAGCTATACCATCGCTGGAC CTTAACCGAGTGGGCTGTTCGTCGTCGTGTGGATGACAGTTAAGATGACACAGCATGCCG CGTGCGTGTGTGCATGCACCAGCTTTGGGATGATCAGTGAGAAGGAATGTTTGAAAGCTG AAGTTGGGGACTAATCCTGTTGGAGCACCTGGCATGTTGCATCATCATTTGACAGTTACG GCCCTGCTGAATGAGGTTGATGCTTTCACCGATTTGGACCACATGGGAGAGCGAGCGAGC GTGTCTCCCGAAGCTTACACCGTGAAATTCTCCGATACAGCTCAGACCAGACCTGCTGAT CCCCCTCCTACACCATAATGTCAAGACATACTCACATACATACGTACGTCCCACTTTGGC TGCATACATTCATACTACGTGGGCACCTGTCGTGTATAAGTATAAGCAGGCAATTAGAAT GCTGCTGATCATTCATCATCTAATGAAGCTGGGCACTATAAGGCTGATATTGGAGGGCAC CCGTCGTCCCTGTCACGTGTACGGACACGTGCACGTGGCACGTTGATTTTTGGGGTTCAA AGTACGATACAATGGGCATACTATAGCTTGTCCTAACAGTCGATGGGGGAACCTTGTGCA GTTGCTGACAGCGGACGGGGGCTGGCTGATGATAATCGTGTGCTGCAGTGTGCAAGTCGA CAGAGGCTTCTGACGTATCCAGTTGCTGAATTGAAAAGGCCACGTACATCGATACAGATA CAGCTAAGACATTATCGATGCTCTGCAAAATCAAATATATTCATTCCCCTTCCAGTGGCC ACGCTCTTCTACACCTCTGGACAAGTTTAAGAAGCCGGCGAGGAAGAAGAAATATTGGAG GGCAATTGTTCTTTTGTGCTGGCCACAACGACCAGCTGCTAGTGAAAACTCAACTGTCTG CAGGGGATAAGAAGATGAAGCTCTGGACACATACAAGATAAAAAATGAAACTTAATGGTC TGCAGGCGATCAAACATATCATAGGAGCATGGAAGGAATGAGTGAAAACTCGGATGTAAG GTATTATCTCTTTAAACACAGGGAAGGTTTCAAAGTTTTAATGAATAGCTTTATCTGATA TTTGTATATAACTTGATTGATTTTTTTTCCTTTAAAGTTGCATCCCACTAGGTAGAGTAT ATGTCTGGTATTGTGATCAAAATGTTATATAATGCCAAAAGTAAAAAAAAAATGTTTATA TTTCTTTCAGCAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)