These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 763 fasta sequence [TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACAACACGAGACAGAAAATGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC-AGCGCGCGGCGCGGGGA-C-GGCGTC-GG--CCCG-GTG-AGC-TGGGACCCCAAGG-TCG--CCA-GCTTCGCGC-AGAGCTACGC-GGCCAAG-CGCG-CCGGCGA-CTGCC-GGCTG-C-A-GCACTCCGGCGGGCCGTACGGCGA-GAACATCTTCTGGGGCTCGGCGGGGCGCGCCT-GGAGCGCCG-CCGAC-GCGGT-GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCC-GGGCAAGGTGTGCGGCCAC-TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC-A-TCGGCTGCGCCCGCGTCGTGTGCGCGGCGAACCGC-GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCCTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTCGCTGCCGCAGTACATTTCATCGATGTTTGTGACTCTGGGATCGACG-TCCGTGAACAATAAAGCATGTAATGATCTTAATAATAAATAATTTCTTGGTNAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA] [+] EMBL CA755277 [TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACAACACGAGACAGAAAATGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC AGCGCGCGGCGCGCGGA C GGCGTC GG CCCG GTG AGC TGGGACCCCAAGG TCG CCA GCTTCGCGC AGAGCTACGC GGCCAAG CGCG CCGGCGA CTGCC GGCTG C A GCACTCCGGCGGGCCGTACGGCGA GAACATCTTCTGGGGCTCGGCGGGGCGCGCCT GGAGCGCCG CCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCC GGGCAAGGTGTGCGGCCAC TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC A TCGGCTGCGCCCGCGTCGTGTGCGCGGCGAACCGC GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCCTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTCGCTGCCGCAGTACATTTCATCGATGTTTGTGACTCTGGGATCGACG TCCGTGAACAATAAAGCATGTAATGATCTTAATAATAAATAATTTCTTGGTNAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA] [+] EMBL OSR23324A [ ACAGAAAATGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTNGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC AGCGCGCGGCG GGGNAGCTGGCGTC GG CCCG GTG AGC TGGGACCCCAAGG TCG CCA GCTTCGCGC AGAGCTACGN GGCCAAG CGCG CCGGCGA CTGCC GCTTG C ANGCACTCCGGCGGGCCGTACGGCGATGAACATC ] [+] EMBL AU070895 [ GAAAATGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC AGCGCGCGGCG GGGNA C GGCGTC GG CCCG GTG AGC TGGGACCCCAAGG TCG CCA GCTTCGCGC AGAGCTACGC GGCCAAG CGCG CCGGCGA CTGCC GGCTGNC A GCACTCCGGCGGGCCGTACGGCGA GAACATCTTCTGGGGCTCGGCGGGGCGCGCCT GGAGCGCCG CCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGGCAAGGTGTGCGGCCACTTACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC A TCGGCTGCGCCCGCGTCGTGTGCGCGGCGAACCGC GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCNTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTCGCTGCCGCAGTACATTTCATCGATGTTTGTGANTCTGGGATCGACGTTCCGTGAACAATAAAGNATGTAATGAT ] [+] EMBL AU184870 [ GAAAATGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC AGCGCGCGGCGCGCGGA C GGCGTC GG CCCG GTG AGC TGGGACCCCAAGG TCG CCA GCTTCGCGC AGAGCTACGC GGCCAAG CGCG CCGGCGA CTGCC GGCTG C A GCACTCCGGCGGGCCGTACGGCGA GAACATCTTCTGGGGCTCGGCGGGGCGCGCCT GGAGCGCCG CCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCC GGGCAAGGTGTGCGGCCAC TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC A TCGGCTGCGCCCGCGTCGTGTGCGCGGC ] [+] EMBL AU070684 [ ACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC AGCGCGCGGCGGGGTAA C GGCGTCGGG CCCG GTG AGC TGGGACCCCAAGG TCG CCA GCTTCGCGC AGAGCTACGCGGGNCAAG CGCG CCGGCGA CTGCC GGCTG C A GCACTCCGGCGGGCCGTACGGCGA GAACATCTTCTGGGGCTCGGNGGGGCGCGCCT NGAGCGCCG CCGACGGCGGTGGGCGTCG ] [+] EMBL AU070767 [ CCNTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC AGCGCGCGGCG GGGNA C GGCGTC GG CCCG GTG AGC TGGGACCCCAAGG TCG CCA GCNTCGCGC AGAGCTACGC GGCCAAG CGCG CCGGCGA CNGCC GGCTG C A GCACNCCGGCGGGCCGTACGGCGA GAACATCTTCTGGGGCTCGGCGGGGCGCGCCT GGAGCGCCG CCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACNACCACNACGACACCAACACGTGCGACCC GGGCAAGGTGTGCGGCCAC NACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC A TCGGCTGCGCCCGCGTCGTGTGCGCGGCGAACCGCGGGCGTGTTCA ] [+] EMBL AU101697 [ aAACCTGCACAACAAGC CGCGGCGCGCGGA C GGCGTC GG CCCG GTG AGC TGGGACCCCAAGG TCG CCA NTTCGCGC AGA NTACGC GGCCAAG CGCN CCGGCGA CTGCC GGCTG C A GCACTCCGGCGGGCCGTACGGCGA GAACATCTTCTGGGGCTCGGCGGGGCGCGCCT GGAGCGCCG CCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCC GGGCAAGGTGTGCGGCCAC TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGCAA TCG TGCGCCCGCGTCGTGTGCGCGGCGAACCGC GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCCTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTC NTGCCGCAGTACATTTCATCGATGTTTGTGACTCTGGGATCGACG TCCGTGAACAATAAAGCATGTAATGATCTTAATAATAAAa ] [+] EMBL AU091989 [ ntTC GGCCCCCGTTTGAAGCTTGGGACCCCAAGGTTCGGCCCANGTTTCGCGCAAGAAGTACGC GCCCAAGCCGCGCCCGGCGANTTNCCGGGTTG CAA GCACTCCGGCGGCCCTTACGGCGA GAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGGAGCGCCC GCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCC GGGCAAGGTGTGCGGCCAC TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC A TCG TGCGCCCGCGTCGTGTGCGCGGCGAACCGC GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCCTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTCG TGCCGCAGTACATTTCATCGATGTTTGTGACTCTGGGATCGACG TCCGTGAACAATAAAGCATGTAATGATCTTAATAATAAATAATTTCTTGGTATATATGCAAAAAAAA ] [+] EMBL AU162565 [ gcCCGNCCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCC GGGCAAGGTGTGCGGCCAN TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC ANTCG TGCGCCCGCGTCGTGTGCGCGGCGAACCGC GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCCTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTCG TGCCGCAGTACATTTCATCGATGTTTGTGACTCTGGGATCGACG TCCGTGAACAATAAAGCATGTAATGATCTTAATAATAAATAATTTCTTGGTATAAAAAA ] [+] EMBL BE040617 [ gCCC GGGCAAGGTGTGCGGCCAC TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC A TCGGCTGCGCCCGCGTCGTGTGCGCGGCGAACCGC GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCCTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTCGCTGCCGCAGTACATTTCATCGATGTTTGTGACTCTGGGATCGACG TCCGTGAACAATAAAGCATGTAATGATCTTAATAATAAATAATTTCTTGGTNAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA] consensusID : consensus_15206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 760 fasta sequence [GTAAGAAAGCAGCTACGTTTACAAGCAGAGATGGAGGCATCCAAGCTAGCAATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGTGGGTCCGATGAGCTGGAGCACGAAGCTGCAGGGGTTCGCGGAGGACTACGCGAGGCAGCGGAAGGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGCGTCTTGCTCTTTTCTAAAAAAAAAAAAA] [+] EMBL AK121108 [GTAAGAAAGCAGCTACGTTTACAAGCAGAGATGGAGGCATCCAAGCTAGCAATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGTGGGTCCGATGAGCTGGAGCACGAAGCTGCAGGGGTTCGCGGAGGACTACGCGAGGCAGCGGAAGGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGC ] [+] EMBL CB662448 [ AGATGGAGGCATCCAAGCTAGCAATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGTGGGTCCGATGAGCTGGAGCACGAAGCTGCAGGGGTTCGCGGAGGACTACGCGAGGCAGCGGAAGGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAGATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGCGTCTTGCTCTTTTC ] [+] EMBL CB662446 [ AGATGGAGGCATCCAAGCTAGCAATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGTGGGTCCGATGAGCTGGAGCACGAAGCTGCAGGGGTTCGCGGAGGACTACGCGAGGCAGCGGAAGGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGCGTCTT ] [+] EMBL CB662447 [ AGACGGAGGCATCCAAGCTAGCAATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGTGGGTCCGATGAGCTGGAGCACGAAGCTGCAGGGGTTCGCGGAGGACTACGCGAGGCAGCGGAAGGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGCGTCTT ] [+] EMBL CF309578 [ gagtagaaaACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGCGTCTTGCTCTTTTCTAAAAAAAAAAAAA] consensusID : consensus_15206#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [TCTGCAGCTTGTTCGTGCTCGCCCGTGGTACCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAACCCCGATCGATGCGTCTTGCTCTTTTCTAAAAAAAA] [+] EMBL BI799765 [TCTGCAGCTTGTTCGTGCTCGCCCGTGGTACCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAACCCCGATCGATGCGTCTTGCTCTTTTCTAAAAAAAA] consensusID : consensus_15206#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [GGATTCCGCATTATACAAGCAGAGATGGAGCATCCAAGCTAGCATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGANNTCGCCGCAGGACTACCTGTCCCCGNGGAACGCGGCCCGGTCCCCCATCNGCGTGGGTCCGATGANCTGGANCACNAAACTGCNCGGGTTCGCGGAAGACTACCCCANGCAGCGGAANGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCNCCGGCGCCNACTGGACGGCCGCGGACCCNGTGCGGTCNTGGGTGGACCAAAAAAAATTTTNTNCTNCNCCAGCAACANCTGCCCCCCGGGAAAGTGTNCGGCCACTACACCCANGTGGTGTNGCGCGACTCCACCAACGTCCGCTGCNCCCCCCNTGCGGTGCNACACCAACNCGGGATCTTCNTCNTCTGCAACTACNAACCCCCGTGGCNACATCCTTGGGCCCANGCCCTACTGATCATACCANCTTGTTGCCACNAANCTATATATATTTTTTCTANCACGCATGCATCNTCCTCCCTCCTTANATGCACCCC] [+] EMBL BE228379 [GGATTCCGCATTATACAAGCAGAGATGGAGCATCCAAGCTAGCATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGANNTCGCCGCAGGACTACCTGTCCCCGNGGAACGCGGCCCGGTCCCCCATCNGCGTGGGTCCGATGANCTGGANCACNAAACTGCNCGGGTTCGCGGAAGACTACCCCANGCAGCGGAANGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCNCCGGCGCCNACTGGACGGCCGCGGACCCNGTGCGGTCNTGGGTGGACCAAAAAAAATTTTNTNCTNCNCCAGCAACANCTGCCCCCCGGGAAAGTGTNCGGCCACTACACCCANGTGGTGTNGCGCGACTCCACCAACGTCCGCTGCNCCCCCCNTGCGGTGCNACACCAACNCGGGATCTTCNTCNTCTGCAACTACNAACCCCCGTGGCNACATCCTTGGGCCCANGCCCTACTGATCATACCANCTTGTTGCCACNAANCTATATATATTTTTTCTANCACGCATGCATCNTCCTCCCTCCTTANATGCACCCC] consensusID : consensus_15206#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CAGGAATTCGGGAGCGAGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGGGTCGGGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCGCGGCGCGCGGACGGCGTCGGCCCGGTGAGCTGGGACCCCAAGGTCGCCAGCTTCGCGCAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTACGGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCCGCCGACGCGGTGGCGTTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCAAGGTGTGCGGGCACTACACCCAGGTGGTGGTGGCGCAAGTCGGTGCGCATCGGCTGCGCCCCGCGTCGTGTGCGCCGGGAAACCGGGGGGTGTTAATCACCTGGTAACTTACGACCCCNCCGGGGCAACTTTAACGGGGGAGCGCCCGGGTTCTTAACCCTTTACCGCCGTGGGCAAGTTAGAACACACCTCACTTCTTTCACAGTCGTG] [+] EMBL BE039211 [CAGGAATTCGGGAGCGAGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGGGTCGGGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCGCGGCGCGCGGACGGCGTCGGCCCGGTGAGCTGGGACCCCAAGGTCGCCAGCTTCGCGCAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTACGGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCCGCCGACGCGGTGGCGTTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCAAGGTGTGCGGGCACTACACCCAGGTGGTGGTGGCGCAAGTCGGTGCGCATCGGCTGCGCCCCGCGTCGTGTGCGCCGGGAAACCGGGGGGTGTTAATCACCTGGTAACTTACGACCCCNCCGGGGCAACTTTAACGGGGGAGCGCCCGGGTTCTTAACCCTTTACCGCCGTGGGCAAGTTAGAACACACCTCACTTCTTTCACAGTCGTG] consensusID : consensus_15206#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [TTTTTTTTTTTAGAAAAGAGCAAGACGCATCGATCGTGGTTTTGTCTTTATTTCAATCCAAGCTGAAGTACATCATTTACTCACTTATTTGATTTGACTAATGTTATTATTACTCCCTCTAATTAAGACATAACACAAACACACAGCGCGTGCATGTAACGAGCGAGGGACGATGCATGCGTGCTAGACACATATATATAGCTTGTTGCAACAACGTCGTATGATCAGTAGGGCCTGCGGCCAACGATGTTGCCACGGGGCTCGTANTTGCAGATGATGAAAAATGCCGCGGTTGGCGTCCACCGCACGCGGGCGCAGCCGAAGTTTGGTGGANTCGCGCCACACCACCTGGCNTTTANTGGCCGCACACCTTCCCCGGGGGGCAACTGTTGCTGGGGTTATTGTTATAATCCTCNCGTCCACCAANAACGCACCGNTCCGCGGCGTCANTCGGGGCCGGGGAACCCAAANAATTCTCCCTTCGGCCCCCAATNGTGAACGGGATCCCCTCCNTGCCCCNTTTCNCCGAACCTGNTTCTNNCANNCNGAACNCCAAGGAAGGCNTTTTGGAAGTTCCCGGAATNG] [+] EMBL AA753311 [TTTTTTTTTTTAGAAAAGAGCAAGACGCATCGATCGTGGTTTTGTCTTTATTTCAATCCAAGCTGAAGTACATCATTTACTCACTTATTTGATTTGACTAATGTTATTATTACTCCCTCTAATTAAGACATAACACAAACACACAGCGCGTGCATGTAACGAGCGAGGGACGATGCATGCGTGCTAGACACATATATATAGCTTGTTGCAACAACGTCGTATGATCAGTAGGGCCTGCGGCCAACGATGTTGCCACGGGGCTCGTANTTGCAGATGATGAAAAATGCCGCGGTTGGCGTCCACCGCACGCGGGCGCAGCCGAAGTTTGGTGGANTCGCGCCACACCACCTGGCNTTTANTGGCCGCACACCTTCCCCGGGGGGCAACTGTTGCTGGGGTTATTGTTATAATCCTCNCGTCCACCAANAACGCACCGNTCCGCGGCGTCANTCGGGGCCGGGGAACCCAAANAATTCTCCCTTCGGCCCCCAATNGTGAACGGGATCCCCTCCNTGCCCCNTTTCNCCGAACCTGNTTCTNNCANNCNGAACNCCAAGGAAGGCNTTTTGGAAGTTCCCGGAATNG] consensusID : consensus_15206#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [GCAGGAATTGGGCAGGAGCAGAAAATGGCACCTTCCAGGTCAGCCTCGCCGCCGTGCTGGCCGGGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCGCGGCGCGCGGACGGCGTCGGCCCGGTGAGCTGGGACCCCAAGGTCGCCAGCTTCGCGCAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTACGGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCCGCCGACGCGGTGGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCAAGGTGTGCGGCCACTACACCCAGGTGGTGTGGCGCAAGTCGGTGCGCATCGGGTGGCGCCCGCGTCGTGTGCGCGGCGAACCGCGGCGTGTTCATTAACTGGAACTAACGACCCCCCGGGGCAACTTAAACGGGGAGGCGCCCGTTCCTTACCCTTGACGCCGCGGGCAAGTAGACGACCACTCACTTCTCC] [+] EMBL BE039223 [GCAGGAATTGGGCAGGAGCAGAAAATGGCACCTTCCAGGTCAGCCTCGCCGCCGTGCTGGCCGGGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCGCGGCGCGCGGACGGCGTCGGCCCGGTGAGCTGGGACCCCAAGGTCGCCAGCTTCGCGCAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTACGGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCCGCCGACGCGGTGGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCAAGGTGTGCGGCCACTACACCCAGGTGGTGTGGCGCAAGTCGGTGCGCATCGGGTGGCGCCCGCGTCGTGTGCGCGGCGAACCGCGGCGTGTTCATTAACTGGAACTAACGACCCCCCGGGGCAACTTAAACGGGGAGGCGCCCGTTCCTTACCCTTGACGCCGCGGGCAAGTAGACGACCACTCACTTCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15206#1 -----------------------GTAAGAAAGCAGCTACGTTTACAAGCAGAGATGGAGG 37 consensus_15206#2 ------------------------------------------------------------ consensus_15206#3 -----------------------------GGATTCCGCATTATACAAGCAGAGATGGAG- 30 consensus_15206#0 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACAACACGAGACAGAAAATG--GCAC 58 consensus_15206#6 --------------------------GCAGGAATTGGGCAGGAG-CAGAAAATG--GCAC 31 consensus_15206#4 --------------------------------------CAGGAATTCGGGAGCGAGGCAC 22 consensus_15206#5 ------------------------------TTTTTTTTTTTAGAAAAGAGCAAGACGCAT 30 consensus_15206#1 CATCCAAGCTAGCAATCTGCAGCTTGTTCGTGCTCGCC-GTGGTAGCCGCTACAATGTTT 96 consensus_15206#2 ---------------TCTGCAGCTTGTTCGTGCTCGCCCGTGGTACCCGCTACAATGTTT 45 consensus_15206#3 CATCCAAGCTAGCA-TCTGCAGCTTGTTCGTGCTCGCC-GTGGTAGCCGCTACAATGTTT 88 consensus_15206#0 CTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCC-ATCTCGCTGGCCATGGCGGCC 117 consensus_15206#6 CTTCCA-GGTCAGCCTCGCCGCCGTGCTGGCCGGGGCC-ATCTCGCTGGCCATGGCGGCC 89 consensus_15206#4 CTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGG--GTCGGGCTGGCCATGGCGGCC 80 consensus_15206#5 CGATCGTGGTTTTGTCTTTATTTCAATCCAAGCTGAAGTACATCATTTACTCACTTATTT 90 * consensus_15206#1 --CACTGCT-CCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCC 153 consensus_15206#2 --CACTGCT-CCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCC 102 consensus_15206#3 --CACTGCT-CCGATGCCCAGANNTCGCCGCAGGACTACCTGTCCCCGNGGAACGCGGCC 145 consensus_15206#0 ACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCG 177 consensus_15206#6 ACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCG 149 consensus_15206#4 ACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCG 140 consensus_15206#5 GATTTGACTAATGTTATTATTACTCCCTCTAATTAAGACATAACACAAACACACAGCGCG 150 * * * * * * ** * * ** ** consensus_15206#1 CGGTCCGCCGTCGGCGTGGGTCCGATGAGC---TGGAGCACGAAGCTGCAGGGGTTCGCG 210 consensus_15206#2 CGGTCCGCCGTCGGCG-------------------------------------------- 118 consensus_15206#3 CGGTCCCCCATCNGCGTGGGTCCGATGANC---TGGANCACNAAACTGCNCGGGTTCGCG 202 consensus_15206#0 CGGCGCGGGGACGGCGTCGGCCCGGTGAGC---TGGGACCCCAAGGTCGCCAGCTTCGCG 234 consensus_15206#6 CGGCGCGCGGACGGCGTCGGCCCGGTGAGC---TGGGACCCCAAGGTCGCCAGCTTCGCG 206 consensus_15206#4 CGGCGCGCGGACGGCGTCGGCCCGGTGAGC---TGGGACCCCAAGGTCGCCAGCTTCGCG 197 consensus_15206#5 TG-CATGTAACGAGCGAGGGAC-GATGCATGCGTGCTAGACACATATATATAGCTTGTTG 208 * *** consensus_15206#1 GAGGACTACGCGAGGCAGCGGAAGGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTAC 270 consensus_15206#2 ----------------------------------------------------GGCCGTAC 126 consensus_15206#3 GAAGACTACCCCANGCAGCGGAANGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTAC 262 consensus_15206#0 CAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTAC 294 consensus_15206#6 CAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTAC 266 consensus_15206#4 CAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTAC 257 consensus_15206#5 CA--ACAACGTCGTATGATCAGTAGG-GCCTGCGGCCAACGATGTTGCCACGGGGCTCGT 265 ** * consensus_15206#1 GGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCC-GCGGACGCGGTGCG 329 consensus_15206#2 GGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCCGCGGACGCGGTGCG 186 consensus_15206#3 GGTGAGAACATCTTCTGGGGCTCCNCCGGCGCCNACTGGACGGCC-GCGGACCCNGTGCG 321 consensus_15206#0 GGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCC-GCCGACGCGGTGGC 353 consensus_15206#6 GGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCC-GCCGACGCGGTGGC 325 consensus_15206#4 GGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCC-GCCGACGCGGTGGC 316 consensus_15206#5 ANTT-GCAGATGATGAAAAATGCCGCGGTTGGCGTCC--ACCGCACGCGGGCGCAGC--- 319 * * ** * * * * * * * ** ** * * * * consensus_15206#1 GT-CGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGA 388 consensus_15206#2 GT-CGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGA 245 consensus_15206#3 GT-CNTGGGTGGACCAAAAAAAATTTTNTN-CTNCNCCAGCAACANCTGC-CCCCCGGGA 378 consensus_15206#0 GT-CGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCA 412 consensus_15206#6 GT-CGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCA 384 consensus_15206#4 GTTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCA 376 consensus_15206#5 ---CGAAGTTTGGTGGANTCGCGCCACACCACCTGGCNTTTANTGGCCGCACACCTTCCC 376 * * * * * * ** * consensus_15206#1 AGGTGTGCGGCCACTACACGCAGGTGGTG-TGGCGCGACTCCACCAACGTCGGCTGCGCC 447 consensus_15206#2 AGGTGTGCGGCCACTACACGCAGGTGGTG-TGGCGCGACTCCACCAACGTCGGCTGCGCC 304 consensus_15206#3 AAGTGTNCGGCCACTACACCCANGTGGTG-TNGCGCGACTCCACCAACGTCCGCTGCNCC 437 consensus_15206#0 AGGTGTGCGGCCACTACACCCAGGTGGTG-TGGCGCAAGTCGGTGCGCATCGGCTG-CGC 470 consensus_15206#6 AGGTGTGCGGCCACTACACCCAGGTGGTG-TGGCGCAAGTCGGTGCGCATCGGGTGGCGC 443 consensus_15206#4 AGGTGTGCGGGCACTACACCCAGGTGGTGGTGGCGCAAGTCGGTGCGCATCGGCTGCGCC 436 consensus_15206#5 CGGGGGGCAACTGTTGC-TGGGGTTATTGTTATAATCCTCNCGTCCACCAANAACGCA-C 434 * * * * * * ** * * * * consensus_15206#1 CGC-GTGCGGTGCGA-CGCCAACCGCGGCATCTTCATCATCTGC-AACTA-CGAGCCCC- 502 consensus_15206#2 CGC-GTGCGGTGCGA-CGCCAACCGCGGCATCTTCATCATCTGC-AACTA-CGAGCCCC- 359 consensus_15206#3 CCCCNTGCGGTGCNA-CACCAACN-CGGGATCTTCNTCNTCTGC-AACTA-CNAACCCCC 493 consensus_15206#0 CCGCGTCGTGTGCGC-GGCGAACCGCGGCGTGTTCATCACCTGC-AACTA-CGACCCCCC 527 consensus_15206#6 CCGCGTCGTGTGCGC-GGCGAACCGCGGCGTGTTCATTAACTGG-AACTAACGACCCCCC 501 consensus_15206#4 CCGCGTCGTGTGCGCCGGGAAACCGGGGGGTGTTAATCACCTGGTAACTTACGACCCCNC 496 consensus_15206#5 CGNTCCGCGGCGTCANTCGGGGCCGGGGAACCCAAANAATTCTC---CCTTCGGCCCCCA 491 * * * * ** * * *** consensus_15206#1 -GTGGCAACATCGTTGGCCGCAGGCCCTA-CTGATCATACGACGTTGTTGCAACAA-GCT 559 consensus_15206#2 -GTGGCAACATCGTTGGCCGCAGGCCCTA-CTGATCATACGACGTTGTTGCAACAA-GCT 416 consensus_15206#3 -GTGGCNACATCCTTGGGCCCANGCCCTA-CTGATCATACCANCTTGTTGCCACNAANCT 551 consensus_15206#0 -GGG-CAACTTCAACGGCGAG-CGCCCG--TTCCTCACCCTCGAC-GCCGCGGCCAAGT- 580 consensus_15206#6 -GGGGCAACTTAAACGGGGAGGCGCCCG--TTCCTTACCCTTGAC-GCCGCGGGCAAGT- 556 consensus_15206#4 CGGGGCAACTTTAACGGGGGAGCGCCCGGGTTCTTAACCCTTTACCGCCGTGGGCAAGTT 556 consensus_15206#5 ATNGTGAACGGGATCCCCTCCNTGCCCCNTTTCNCCGAACCTGNTTCTNNCANNCNGAAC 551 * ** **** * * consensus_15206#1 ATATATATGTGT-CTAGCA-CGCATGCATCGTCCCTCGCTCGTTACAT-GCACGCGCTGT 616 consensus_15206#2 ATATATATGTGT-CTAGCA-CGCATGCATCGTCCCTCGCTCGTTACAT-GCACGCGCTGT 473 consensus_15206#3 ATATATATTTTTTCTANCA-CGCATGCATCNTCC-TCCCTCCTTANAT-GCACCCC---- 604 consensus_15206#0 AGACGACCACTCACTCGTA-CACAGTCGTGTTGAACTGCATGCTATGTCGCTGCCGCAGT 639 consensus_15206#6 AGACGACCACTCACTTCTC-C--------------------------------------- 576 consensus_15206#4 AGAACACACCTCACTTCTTTCACAGTCGTG------------------------------ 586 consensus_15206#5 NCCAAGGAAGGCNTTTTGGAAGTTCCCGGAATNG-------------------------- 585 * consensus_15206#1 GTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGT 676 consensus_15206#2 GTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGT 533 consensus_15206#3 ------------------------------------------------------------ consensus_15206#0 ACATTTCATCGATGTTTGTGACTCTGGGATCGACGTCCGTGAACAATAAAGCATGTAATG 699 consensus_15206#6 ------------------------------------------------------------ consensus_15206#4 ------------------------------------------------------------ consensus_15206#5 ------------------------------------------------------------ consensus_15206#1 GAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGCGTCT 736 consensus_15206#2 GAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAACCC-CGATCGATGCGTCT 592 consensus_15206#3 ------------------------------------------------------------ consensus_15206#0 ATCTTAATAATAAATAATTTCTTGGTNAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA 759 consensus_15206#6 ------------------------------------------------------------ consensus_15206#4 ------------------------------------------------------------ consensus_15206#5 ------------------------------------------------------------ consensus_15206#1 TGCTCTTTTCTAAAAAAAAAAAAA 760 consensus_15206#2 TGCTCTTTTCTAAAAAAAA----- 611 consensus_15206#3 ------------------------ consensus_15206#0 AAAA-------------------- 763 consensus_15206#6 ------------------------ consensus_15206#4 ------------------------ consensus_15206#5 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||