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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1322 fasta sequence
[CTGACCTAAACCCTAGCTCGCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTCGCCGTCGAGCACCACCCGAGCAGCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGTAACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATG-AAGAGGCAGATGCAG-ATGGTGCAAATTATCAGC-TTGA-GATGATGAGGTGC-TTGAGGG-AGGTTAATG-TTG-ACAAT-AACACTG-TTGGAT-GGTATCAATCTT-GCTTGCTTGGATCTTTTCAGACTGTGGAACTGATTGAAACGTTTATGAACTATCAGGAGAATATCCGGAGATGTGTGTGCATCGTTTATGACCCATCTAGGTCAAATCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTACCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATATTTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT-ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCGCTTGGTTGGGTCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU067891 [CTGACCTAAACCCTAGCTCGCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTCGCCGTCGAGCACCACCCGAGCAGCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGTAACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATG AAGAGGCAGATGCAG ATGGTGCAAATTATCAGC TTGA GATGATGAGGTGC TTGAGGG AGGTTAATG TTG ACAAT AACACTG TTGGAT GGTATCAATCTT GCTTGC ]
[+] EMBL AK103713 [ CCCTAGCTCGCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTCGCCGTCGAGCACCACCCGAGCAGCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGTAACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATG AAGAGGCAGATGCAG ATGGTGCAAATTATCAGC TTGA GATGATGAGGTGC TTGAGGG AGGTTAATG TTG ACAAT AACACTG TTGGAT GGTATCAATCTT GCTTGCTTGGATCTTTTCAGACTGTGGAACTGATTGAAACGTTTATGAACTATCAGGAGAATATCCGGAGATGTGTGTGCATCGTTTATGACCCATCTAGGTCAAATCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTACCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATATTTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATT ]
[+] EMBL AU075644 [ GCTCGCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTCGCCGTCGAGCACCACCCGAGCAGCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGTAACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATG AAGAGGCAGATGCAG ATGGTGCAAATTATCAGC TTGA GATGATGAGG ]
[+] EMBL OSR22791A [ GCTCGCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTCGCCGTCGAGCACCACCCGAGCATCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGG ]
[+] EMBL AU069996 [ TCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTCGCCGTCGAGCACNACCCGAGCAGCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGTAACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATGAAAGAGGCAGATGCAGAATGGTGCAAATTATCAGCTTTGANAATGATGAAGTGCNTTAAGGGAAGGTTAATGTTTGAACAATAAANACTGTTTGGATGGGTATCAAACTTNGCTT ]
[+] EMBL AK061349 [ CCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGTAACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATG AAGAGGCAGATGCAG ATGGTGCAAATTATCAGC TTGA GATGATGAGGTGC TTGAGGG AGGTTAATG TTG ACAAT AACACTG TTGGAT GGTATCAATCTT GCTTGCTTGGATCTTTTCAGACTGTGGAACTGATTGAAACGTTTATGAACTATCAGGAGAATATCCGGAGATGTGTGTGCATCGTTTATGACCCATCTAGGTCAAATCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTACCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATATTTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGA ]
[+] EMBL CB630744 [ AGATGCCG ATGGTGCAAATTATCAGC TTGA GATGATGAGGTGC TTGAGGG AGGTTAATG TTG ACAAT AACACTG TTGGAT GGTATCAATCTT GCTTGCTTGGATCTTTTCAGACTGTGGAACTGATTGAAACGTTTATGAACTATCAGGAGAATATCCGGACATGTGTGTGCATCGTTTATGACCCATCTAGGTCAAACCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTACCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATATTTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGANGACTAGATG ]
[+] EMBL CA998508 [ T GCTTGCTTGGATCTTTTCAGACTGTGGAACTGATTGAAACGTTTATGAACTATCAGGAGAATATCCGGAGATGTGTGTGCATCGTTTATGACCCATCTAGGTCAAATCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTACCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATATTTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTAC ]
[+] EMBL CA999996 [ AACTATCAGGAGAATATCCGGAGATGTGTGTGCCTTGTTTATGACCCATCTAGGTCAAATCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTACCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATATTTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATG ]
[-] EMBL CB630745 [ GGTTTATCTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGGGGATATTTTTGAGGGGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGAGGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTTTGATTGGGTGCATGGATGATTTTTCATCAGAGCAGAACAAGTTCCAATATTTTTATCGCAATGTTTCAAGACAGCAGTCTCAGCAGCAGGCATGGGTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGTTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCTTGAGCCGTCACGTTTGGGGGGTTATTTTGTAACCAATCAGATTTCCAGTTTTTGCAACCATATTAATGGGGTTGGTGGTCAGAATTTCAACAGGCTTTATTTAATGAAGGCCTTGCAGGAGGACTAGATGGGTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAACCAGAGCCTATTGTACCAATTTTTCGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCGC ]
[+] EMBL CA757415 [ CCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTNTGCCTTGTGCTTTATGCCTATTATAACCTTTTGC ]
[+] EMBL AU075643 [ CACAGTGTGATTTTGNCCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGG CTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCGCTTGGTTGGGTCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA999917 [ GCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACC ]
[+] EMBL CA999584 [ GCCTTAAATTGTCTACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCACAGCAGAACAAGTTCCCATATTACTATCGCCATGCCTCCAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAATGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAG ]
[+] EMBL CB000596 [ TTAAATTGTCAACTGCTCCATTCATGGAAAGGATCCCGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACCGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCG ]
[+] EMBL CB660434 [ TCAGAGCAGAACAAGTTCCAATATTACTATCCCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCGCT ]
consensusID : consensus_15208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[TGGCATAAGCTGCTGGAGAGTGAGCCATTTGCCAAGAAGAAGACCCATTCCAATCCCATTTTCAAGCCCGATTCCTGAGCCGTCCACGTTTNGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTATACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCGCTAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU096998 [TGGCATAAGCTGCTGGAGAGTGAGCCATTTGCCAAGAAGAAGACCCATTCCAATCCCATTTTCAAGCCCGATTCCTGAGCCGTCCACGTTTNGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTATACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCGCTAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15208#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence
[GNTCNTGTTTCCGTCGTAAAGCTTCAGATGNNTTTTGNTNTTCATTCCATGGCGCTTATNCACCAGCCNTATTGANANTTGCGTTACNACTGCAGGGTTGCTGGNCAGAATTTCNACAGGCGCTACTTAATNAAGGCCTTNCAGGAGGACTAGATGGCTAGGTNATGAGTGGCAACTGTTATGATATNTGACTTGCTAGATGNCAATTTTGCCNTGTGCTTTATGCCTATTATACCNTTTGCCNANAAAAGCCAGAGCCTATTGTNCCAACCTTACGGATANNAAGTCCNCAGTATGATAAANTGATTTTATCGCTTGGTTGGGTCTNAA]
[-] EMBL OSS10781A [GNTCNTGTTTCCGTCGTAAAGCTTCAGATGNNTTTTGNTNTTCATTCCATGGCGCTTATNCACCAGCCNTATTGANANTTGCGTTACNACTGCAGGGTTGCTGGNCAGAATTTCNACAGGCGCTACTTAATNAAGGCCTTNCAGGAGGACTAGATGGCTAGGTNATGAGTGGCAACTGTTATGATATNTGACTTGCTAGATGNCAATTTTGCCNTGTGCTTTATGCCTATTATACCNTTTGCCNANAAAAGCCAGAGCCTATTGTNCCAACCTTACGGATANNAAGTCCNCAGTATGATAAANTGATTTTATCGCTTGGTTGGGTCTNAA]
consensusID : consensus_15208#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence
[GCCGCCGNCGCCGTCGCCGTCGAGCACCACCCGAGCAGNCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGNCGCTCCGNGTCGTGCAGATGGAGGGCCTGGNTGTCCTGAAGATCATTAAGCACTGTGAGGGAGTTTGCACCTGGNTCTAAGTTACAGGGCAACTGGCTTTGGGTTTGNATTGTTTGGCAGTTGTTTCTGTGAAGTTAACGNNACTGNTTTTTCCTTTTCCCAAATGNGGAAGTANG]
[+] EMBL OSC20911 [GCCGCCGNCGCCGTCGCCGTCGAGCACCACCCGAGCAGNCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGNCGCTCCGNGTCGTGCAGATGGAGGGCCTGGNTGTCCTGAAGATCATTAAGCACTGTGAGGGAGTTTGCACCTGGNTCTAAGTTACAGGGCAACTGGCTTTGGGTTTGNATTGTTTGGCAGTTGTTTCTGTGAAGTTAACGNNACTGNTTTTTCCTTTTCCCAAATGNGGAAGTANG]
consensusID : consensus_15208#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence
[ATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATATGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTATACCTTTTGCCTAGATAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCTTTTTATGATAAATTGATTTTATCGCTTGGTTGGGTCTCTTATGGTGTTTAAATCTTTCAGTTAACTCAAATTGCTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF329289 [ATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATATGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTATACCTTTTGCCTAGATAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCTTTTTATGATAAATTGATTTTATCGCTTGGTTGGGTCTCTTATGGTGTTTAAATCTTTCAGTTAACTCAAATTGCTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 CTGACCTAAACCCTAGCTCGCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTC 60
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 GCCGTCGAGCACCACCCGAGCAGCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGG 120
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 GGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCT 180
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 CCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTT 240
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 TGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGT 300
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 AACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATGAAGAGGCAGATGCAGATGGTGC 360
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 AAATTATCAGCTTGAGATGATGAGGTGCTTGAGGGAGGTTAATGTTGACAATAACACTGT 420
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 TGGATGGTATCAATCTTGCTTGCTTGGATCTTTTCAGACTGTGGAACTGATTGAAACGTT 480
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 TATGAACTATCAGGAGAATATCCGGAGATGTGTGTGCATCGTTTATGACCCATCTAGGTC 540
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 AAATCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTA 600
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 CCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATAT 660
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 TTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGA 720
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 GCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGC 780
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 TCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGA 840
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 ------------------------------------------------------------
consensus_15208#0 GCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGC 900
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 -----------------------------TGGCATAAGCTGCTGGAGAGTGAGCCATTTG 31
consensus_15208#0 ATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATT 960
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 --------------------GNTCNTGTTTCCGTCGTAAAGCTTCAGATGNNTTTTGNTN 40
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 CCAAGAAGAAGACCCATTCCAATCCCATTTTCAAGCCCGATTCCTGAGCCGTCCACGTTT 91
consensus_15208#0 GCCAGAAGAAGACCCAT-CCAATCCCATTTTCAA-GCCGATTCCTGAGCCGTCAC--GTT 1016
consensus_15208#3 ------------------------------------------------GCCGCCGNCGCC 12
consensus_15208#2 TTCATTCCATGGCGCTTATNCACCAGCCNTATTGANANTTGCGTTACNACTGCAGGGTTG 100
consensus_15208#4 ------------------------------------------------------------
consensus_15208#1 NGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTG 151
consensus_15208#0 TGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTG 1076
consensus_15208#3 GTCGCCGTCGAGCACCACCCGAGCAGNCATG--GCGAATCCGGCAGCAGCAGCAGGGCCG 70
consensus_15208#2 CTGGNCAGAATTTCNACAGGCGC-TACTTAATNAAGGCCTTNCAGGAGGACTAGATGGCT 159
consensus_15208#4 ------------------------------ATGAAGGCCTTGCAGGAGGACTAGATGGCT 30
consensus_15208#1 CTGGTCAGAATTTCAACAGGCTC-TACTTAATGAAGGC-TTGCAGGAGGACTAGATGGCT 209
consensus_15208#0 CTGGTCAGAATTTCAACAGGCTC-TACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCT 1135
consensus_15208#3 TCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCG 130
* * * * ***** * * *
consensus_15208#2 AGGTNATGAGTGGCAACTGTTATGATATNTGACTTGCTAGATGNCAATTTTGCCNTGTGC 219
consensus_15208#4 AGGTGATGAGTGGCAACTGTTATGATATATGACTTGCTAGATGTCAATTTTGCCTTGTGC 90
consensus_15208#1 AGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGC 269
consensus_15208#0 AGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGC 1195
consensus_15208#3 NCGCTCCGNGTCGTG-CAGATGGAGGGCCTGGNTGTCCTGAAGATCATTAAGCACTGTGA 189
* * ** * * * * ** * * ** * *** ** ****
consensus_15208#2 TTTATGCCTATTATACCNTTTGCCNANAAAAGCCAGAGCCTATTGTNCCAACCTTACGGA 279
consensus_15208#4 TTTATGCCTATTATACCTTTTGCCTAGATAAGCCAGAGCCTATTGTACCAATCTTACGGA 150
consensus_15208#1 TTTATGCCTATTATACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGA 329
consensus_15208#0 TTTATGCCTATTATACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGA 1255
consensus_15208#3 GGGAGTTTGCACCTGGNTCTAAGTTACAGGGCAACTGGCTTTGGGTTTGNATTGTTTGGC 249
* * * * * ** * ** * * **
consensus_15208#2 TANNAAGTCCNCAGTAT-GATAAANTGATTTTATCGCTTGGTTGGGTCTNAA-------- 330
consensus_15208#4 TACAAAGTCCTTTTTAT-GATAAATTGATTTTATCGCTTGGTTGGGTCTCTTATGGTGTT 209
consensus_15208#1 TACAAAGTCCGCAGTAT-GATAAATTGATTTTATCGCTAAAAAAAAAAAAAAAAAAAAAA 388
consensus_15208#0 TACAAAGTCCGCAGTAT-GATAAATTGATTTTATCGCTTGGTTGGGTCAAAAAAAAAAAA 1314
consensus_15208#3 AGTTGTTTCTGTGAAGTTAACGNNACTGNTTTTTCCTTTTCCCAAATGNGGAAGTANG-- 307
** * * *** ** *
consensus_15208#2 ------------------------------------------------------------
consensus_15208#4 TAAATCTTTCAGTTAACTCAAATTGCTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 269
consensus_15208#1 AAA--------------------------------------------------------- 391
consensus_15208#0 AAAAAAAA---------------------------------------------------- 1322
consensus_15208#3 ------------------------------------------------------------
consensus_15208#2 --
consensus_15208#4 AA 271
consensus_15208#1 --
consensus_15208#0 --
consensus_15208#3 --
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||