These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1026 fasta sequence [TCAAAATCCCATTGCTCACCCGCGTTATATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGCAAGGTGTGCACCAAGACGGTGTACCCGA-TGGACCAGCTCTCCACCGACGGCGTCGTCTTCCACCGCTCCTGC-TTCAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGCCATACTGC-AAGCCCCA-TTTCGAGCAAC-TGTTCAAGGAGACCGGGAGCTACAACAAGAGC-TTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGACAAGATCACC-TAGC-AAAGCCGCACG-CATGTTTT-CA-GGGACACAGGAGAAGTGT-GCCACTTGCAGTAAAA--CAGCGTATCC-TCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGT-CCTGCTTCAAATGTTCTCA-CGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAGCTACAACCATCTGATCAAATGCGCA-TCAGTCAAGCGCGCCGAAGCACAGCCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGC-TTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGATATACCGTACTCTATTTTGTTGATTGCTTTTTGAGCGTGTGTTTAAAAAAAAAAAAAGAAA] [+] EMBL OSS4178A [TCAAAATCCCATTGCTCACCCGCGTTATATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGNCGNCGNAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGNGACGAAGNAGAAGTGCAAGGTGTNCACCAAGACGGTGTACCCGA TGGACCAGCTCTCCANCGACGNCGTCG ] [+] EMBL OSS3306A [TCAAAATCCCATTGCTCACCCGCGTTATATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGCAAGGTGTGCACCAAGACGGTGTACCCGATTGGACCAGCTCTCCACCGACGGCGTCGTCTTCCACCGATCCTGCTTTCAAGTGNCAACACTGCAAGTCCACCCTNTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGNCATACTGCAAAGNCCCATTTTCGAGCAACTTGTTCAA ] [+] EMBL AU065317 [ CAAAATCCCATTGCTCACCCGCGTTATATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGCAAGGTGTGCACCAAGACGGTGTACCCGA TGGACCAGCTCTCCACCGACGGCGTCGTCTTCCACCGCTCCTGC TTCAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGCCATACTGC AAGCCCCA TTTCGAGCAAC TGTTCAAGGAGACCGGGAGCTACAACAAGAGCTTTCCAATNACCCGNGAAACCCGCATCGGAGAAGTTGACNCCTGAGCTGANAAGATCACCTTAGC AA ] [+] EMBL AK058507 [ TTGCTCACCCGCGTTATATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGCAAGGTGTGCACCAAGACGGTGTACCCGA TGGACCAGCTCTCCACCGACGGCGTCGTCTTCCACCGCTCCTGC TTCAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGCCATACTGC AAGCCCCA TTTCGAGCAAC TGTTCAAGGAGACCGGGAGCTACAACAAGAGC TTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGACAAGATCACC TAGC AAAGCCGCACG CATGTTTT CA GGGACACAGGAGAAGTGT GCCACTTGCAGTAAAA CAGCGTATCC TCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGT CCTGCTTCAAATGTTCTCA CGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAGCTACAACCATCTGATCAAATGCGCA TCAGTCAAGCGCGCCGAAGCACAGCCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGC TTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGT ] [+] EMBL CF323532 [ ATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGCAAGGTGTGCACCAAGACGGTGTACCCGA TGGACCAGCTCTCCACCGACGGCGTCGTCTTCCACCGCTCCTGC TTCAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGCCATACTGC AAGCCCCA TTTCGAGCAAC TGTTCAAGGAGACCGGGAGCTACAACAAGAGC TTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGACAAGATCACC TAGC AAAGCCGCACG CATGTTTT CA GGGACACAGGAGAAGTGT GCCACTTGCAGTAAAA CAG ] [+] EMBL AU030413 [ GCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGCAAGGTGTGCACCAAGACGGTGTACCCGA TGGACCAGCTCTCCACCGACGGCGT GTCTTCCACCGCTCCTGC TTCAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTANTCCTCGATTGAAGGAGTGCCATACTGC AAGCCCCA TTTCGAGCAAC TGTTCAAGGAGACCGGGAGCTACAACAAGAG TTCC ATCACCCGCG AANCCGCATCGGAGAAGTTG CT CTGAG TGACAAGATCACC TAGCna ] [+] EMBL AU030414 [ CACN TAGCAAAACCCGCACGCCATGTTTTNCAGGGGACACAGGAGAAGTGTCCCCACTTGCAGTAAAAACCAGCGTATCCTTCTAGAGAAGTTGACAGTTGAAGGACAGGCCTNCCACAAGTCCCTGCTTCAAATGTTCTCACCGGTGGCTGTGCCATTTCGCCNTCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAGCTACAACCATCTGATCAAATGCGCATTCAGTCAAGCGCGCCGAAGCANAGCCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGC TTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAaaa ] [+] EMBL CA757302 [ ACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGC TTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGATATACCGTACTCTATTTTGTTGATTGCTTTTTGAGCGTGTGTTTAAAAAAAAAAA ] [+] EMBL CA757153 [ ACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGC TTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGATATACCGTACTCTATTTTGTTGATTGCTTTTTGAGCGTGTGTTTAAAAAAAAAAA ] [+] EMBL CA757218 [ CCATATTTTCAGTGAGGCTTGAGGGCGAAAACTCGGAAGCCCTCTGTTTTACAACCTGCGTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGATATACCGTACTCTATTTTGTTGATTGCTCTTTGAGCGCGCGTTTAACAAGCAAGCAAGAAA] consensusID : consensus_15214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1024 fasta sequence [ATTGCGAACATTGACAACCTGTTTATTTTGTTGATAAAATGTGTTATGAATTCTGATGCTCTGGCCCTGCTTATTTGTTCAATTTTATGCAGCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGGTGAGTGCCATTGGCTGCATGCATTGCTTGTCTGTTTTCATTCCAAAGTACTTCTATGTTTGTATGTGATGCTACCTCGCTTTTCAACTAATTTTGTCTGAAACATTCATTTCAGACAAGATCACCTAGCAAAGCCGCACGCATGTTTTCAGGGACACAGGAGAAGTGTGCCACTTGCAGTAAAACAGCGTATCCTCTAGAGAAGGTAATGCCCCATAATTTGTGCT-CTTTTCATCTTAGTTTCATACTGTAGTGTTGTTAGGTCATTTCTTCCAAAATTGCATTGTTAGATGTTGAAATAGGGATGAATGATCAGAGGGATCTTTTAGGTACATTATTCCGCCTAATTGTATTGTTCTCCTGTAACAAGTTGTAAGGTTCTGCCTTGATTGTACTTATTTGCCAAGAATTTATTTCAATTATGCTCCTCAAGTTTTTGGAACATGCAGTGGTTGTGATGATAAGCTTTTATTTGCAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAATGTTCTCACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATTGTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAGCTACAACCATCTGATCAAATGCGCATCAGTCAAGCGCGCGGAAGCACAGCCGGCACCACCACCGGCCGGTGCAGATTCCTCCTGAATGTACCATATTTCCAGTGAGGATTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCAGGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCCCTTTGGAGGGCCATGAATATCATGTCCCTTTCGGGAGAAAAAATAA] [-] EMBL CB640081 [ATTGCGAACATTGACAACCTGTTTATTTTGTTGATAAAATGTGTTATGAATTCTGATGCTCTGGCCCTGCTTATTTGTTCAATTTTATGCAGCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGGTGAGTGCCATTGGCTGCATGCATTGCTTGTCTGTTTTCATTCCAAAGTACTTCTATGTTTGTATGTGATGCTACCTCGCTTTTCAACTAATTTTGTCTGAAACATTCATTTCAGACAAGATCACCTAGCAAAGCCGCACGCATGTTTTCAGGGACACAGGAGAAGTGTGCCACTTGCAGTAAAACAGCGTATCCTCTAGAGAAGGTAATGCCCCATAATTAGTG T TTTTTAATTTTA ] [-] EMBL CB637788 [ CAAAGTACTTGTATGTTTATATGTGATGCTACCTCGCTTTTCAAGTAATTTTGTTTGGAACATTCATTTCAGACAAGATCACCTAGCAAAGCCGCACGCATGTTTTCAGGGACACAGGAGAAGTGTGCCACTTGCAGTAAAACAGCGTATCCTCTAGAGAAGGTAATGCCCCATAATTTCTGCT CTTTTCATCTTAGTTTCATACTGTAGTGTTGTTAGGTCATTTCTTCCAAAATTGCATTGTTAGATGTTGAAATAGGGATGAATGATCAGAGGGA ] [-] EMBL CB661166 [ CCATAATTTGTGGTCCTTTTCATCCTAGTTTCATACTGTAGGGTGGTTAGGTCATTTCTTCCAAAATTGCATTGTTAGATGTTGAAATAGGGATGAATGATCAGAGGGATCTTTTAGGTACATTATTCCGCCTAATTGTATTGTTCTCCTGTAACAAGTTGTAAGGTTCTGCCTTGATTGTACTTATTTGCCAAGAATTTATTTCAATTATGCTCCTCAAGTTTTTGGAACATGCAGTGGTTGTGATGATAAGCTTTTATTTGCAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAATGTTCTCACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATTGTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAGCTACAACCATCTGATCAAATGCGCATCAGTCAAGCGCGCGGAAGCACAGCCGGCACCACCACCGGCCGGTGCAGATTCCTCCTGAATGTACCATATTTCCAGTGAGGATTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCAGGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCCCTTTGGAGGGCCATGAATATCATGTCCCTTTCGGGAGAAAAAATAA] consensusID : consensus_15214#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 735 fasta sequence [GACGAGACAAGGGGGCTTAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGCCATACTGCAAGCCCCATTTCGAGCAACTGTT--CAAGGAGACCGGGA-GCTACAACAAGAGCTTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGACAAGATCACCTAGCAAAGCCGCACACATGTTTTCAGGGACACAGGAGAAGTGTGCCACTTGCAGTAAAACA-GCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAAT-GTTCT-CACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTC-AAGGAG--AAAGGGAGCTAC--AACC-ATC--TGA-TCAAATGCG-CATCAGTCAAGCGCGCCGAAGCACAG-CCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAAAAGTTGTGCNAGTACTGATATACCGTACTCTATTTTGCTTAAAAAAAAAA] [+] EMBL CA764742 [GACGAGACAAGGGGGCTTAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGCCATACTGCAAGCCCCATTTCGAGCAACTGTT CAAGGAGACCGGGA GCTACAACAAGAGCTTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGACAAGATCACCTAGCAAAGCCGCACACATGTTTTCAGGGACACAGGAGAAGTGTGCCACTTGCAGTAAAACA GCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAAT GTTCT CACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTC AAGGAG AAAGGGAGCTAC AACC ATC TGA TCAAATGCG CATCAGTCAAGCGCGCCGAAGCACAG CCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAACATCATGT ] [+] EMBL BI806615 [ CTGTTTCCAGGGAGACCGGGATGCTACCACCAGAGCTTCCAATCACCCGCG AACCCGCATCGGAGAAGTTGACTCCTGAGCTGACAAGATCACCTAGCAAA CCGCACGCATGTTTTCAGGGACACAGGAGAAGTGTGCCACCTTCAGTAAAACA GCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAAT GTTCT CACGGTGGCTGTGCCATTTCGCCATCC ATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTC AAGGAG AAAGGGAGCTAC AACC ATC TGA TCAAATGCG CATCAGTCAAGCGCGCCGAAGCACAG CCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCNAGTACTGATATACCGTACTCTATTTTGCTTAAAAAAAAAA] [+] EMBL BE229561 [ GACACAGGAGAAGTGTGCCACTTGCAGTAAAACA GCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAAT GTTCT CACGGTGGCTGTG CATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTC AAGGAG AAAGGGAGCTAC AACC ATC TGA TCAAATGCG CATCAGTCAAGCGCGCCGAAGCACAGVCCGGCACCACCACCGGCCGCTGCAGATTCCYCCYGAATGTACCATATCTCCAGTGAGGSTTGAGGGCGAAAATTCGGGAGCCCTCTGTTTTACAACCYGCTTGTATGCCATGT ] [+] EMBL AU097356 [ CCACTTGCAGTAAAACANGCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAAT GTTCT CACGGT GCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTC AAGGAG AAAGGGAGCTAC AACC ATC TGA TCAAATGCG CATCAGTCAAGCGCGCCGAAGCACAG CCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAAAA ] [+] EMBL AU095380 [ AAAACA GCGTATCCTCTAGAGAAGNTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAATGGTTCTCCACGGTGGCTGTNCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTC AAGGAG AAAGGGAGCTAC AACC ATC TGA TCAAATGCG CATCAGTCAAGCGCGCCGAAGCACAG CCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAAAAaaaa ] [+] EMBL AU097257 [ gTTCCNCCAAACTTTNCAAAGGAGGAAAAGGGAGCTACCAAACCAATCNTTGATTCAAATGCGCCATCAGTCAAGCGCGCCGAAGCACAG CCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAA ] consensusID : consensus_15214#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 125 fasta sequence [ATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAANANA] [+] EMBL AU094518 [ATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAANANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15214#0 ------------------------------------------------------------ consensus_15214#2 ------------------------------------------------------------ consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 ATTGCGAACATTGACAACCTGTTTATTTTGTTGATAAAATGTGTTATGAATTCTGATGCT 60 consensus_15214#0 -----------------------------------TCAAAATCCCATTGCTCACCCGCGT 25 consensus_15214#2 ------------------------------------------------------------ consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 CTGGCCCTGCTTATTTGTTCAATTTTATGCAGCCGCGAAACCCGCATCGGAGAAGTTGAC 120 consensus_15214#0 TATATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGG 85 consensus_15214#2 ------------------------------------------------------------ consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 TCCTGAGCTGGTGAGTGCCATTGGCTGC-ATGCATTGCTTGTCTGTTTTCATTCCAAAGT 179 consensus_15214#0 AGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAG 145 consensus_15214#2 ------------------------------------------------------------ consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 ACTTCTATGTTTGTATGTGATGCTACCTCGCTTTTCAACTAATTTTGTCTGAAACATTCA 239 consensus_15214#0 GAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGC 205 consensus_15214#2 ------------------------------------------------------------ consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 TTTCAGACAAGATCACCTAGCAAAGCCGCACGCATGTTTTCAGGGACACAGGAGAAGTGT 299 consensus_15214#0 AAGGTGTGCACCAAGACGGTGTACCCGATGGACCAGCTCTCCACCGACGGCGTCGTCTTC 265 consensus_15214#2 ---------------------------------------------------------GAC 3 consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 GCCACTTGCAGTAAAACAGCGTATCCTCTAGAGAAGGTAATGCCCCATAATTTGTGCTCT 359 consensus_15214#0 CACCGCTCCTGCTTCAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCC 325 consensus_15214#2 GAGACAAGGGGGCTTAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCC 63 consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 TTTCATCTTAGTTTCATACTGTAGTGTTGTTAGGTCATTTCTTCC----AAAATTGC--- 412 consensus_15214#0 TCGATTGAAGGAGTGCCATACTGCAAGCCCCATTTCGAGCAACTGTTCAAGGAGACCGGG 385 consensus_15214#2 TCGATTGAAGGAGTGCCATACTGCAAGCCCCATTTCGAGCAACTGTTCAAGGAGACCGGG 123 consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 ---ATTGTTAGATGTTGAAATAGGGATGAATGATCAGAGGGATCTTTTAGGTACATTA-- 467 consensus_15214#0 AGCTACAACAAGAGCTTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAG 445 consensus_15214#2 AGCTACAACAAGAGCTTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAG 183 consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 --TTCCGCCTAATTGTATTGTTCTCCTGTAACA-----AGTTGTAAGGTTCTGCCTTGAT 520 consensus_15214#0 CTGACAAGATCACCTAGCAAA-GCCGCACGCATGTTTTCAGGGACACAGGAGAAGTGTGC 504 consensus_15214#2 CTGACAAGATCACCTAGCAAA-GCCGCACACATGTTTTCAGGGACACAGGAGAAGTGTGC 242 consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 TGTACTTATTTGCCAAGAATTTATTTCAATTATGCTCCTCAAGTTTTTGGA-ACATGCAG 579 consensus_15214#0 CACTTGCAGTAAAACAGCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCA 564 consensus_15214#2 CACTTGCAGTAAAACAGCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCA 302 consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 TGGTTGTGATGATA-AGCTTTTATTT----GCAGGTGACAGTTGAAGGACAGGCCTACCA 634 consensus_15214#0 CAAGTCCTGCTTCAAATGTTCTCACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGC 624 consensus_15214#2 CAAGTCCTGCTTCAAATGTTCTCACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGC 362 consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 CAAGTCCTGCTTCAAATGTTCTCACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGC 694 consensus_15214#0 TTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAG 684 consensus_15214#2 TTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAG 422 consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 TTTGGAAGGTATCCTATTGTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAG 754 consensus_15214#0 CTACAACCATCTGATCAAATGCGCATCAGTCAAGCGCGCCGAAGCACAGCCGGCACCACC 744 consensus_15214#2 CTACAACCATCTGATCAAATGCGCATCAGTCAAGCGCGCCGAAGCACAGCCGGCACCACC 482 consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 CTACAACCATCTGATCAAATGCGCATCAGTCAAGCGCGCGGAAGCACAGCCGGCACCACC 814 consensus_15214#0 ACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAA 804 consensus_15214#2 ACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAA 542 consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 ACCGGCCGGTGCAGATTCCTCCTGAATGTACCATATTTCCAGTGAGGATTGAGGGCGAAA 874 consensus_15214#0 ATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACC 864 consensus_15214#2 ATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACC 602 consensus_15214#3 ------------------------------------------------------------ consensus_15214#1 ATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCAGGTTCCAGTTCTGAGGATACC 934 consensus_15214#0 GGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGA 924 consensus_15214#2 GGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGA 662 consensus_15214#3 -------ATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGA 53 consensus_15214#1 GGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCCCTTTGGAGGGCCATGA 994 ************************************ * **** * ****** consensus_15214#0 ATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGATATACCGTACTCTATTTTG 984 consensus_15214#2 ATATCATGTCCCTTTCAAAGAAAAAGTTGTGCNAGTACTGATATACCGTACTCTATTTTG 722 consensus_15214#3 ATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGAAAAAAAAAAAAAAA----- 108 consensus_15214#1 ATATCATGTCCCTTTCGGGAGAAAAAATAA------------------------------ 1024 **************** ** * consensus_15214#0 TTGATTGCTTTTTGAGCGTGTGTTTAAAAAAAAAAAAAGAAA 1026 consensus_15214#2 CT----------------------TAAAAAAAAAA------- 735 consensus_15214#3 -------------------------AAAAAAAAAAAAANANA 125 consensus_15214#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||