These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 2618 fasta sequence [TTTNTTTTTNTTTANGNCAACCGTTTTATGGAAATTGATGCTTAGCTATTTAGCTAATACTCGGATGTAATTACAAAATTGTTGTTCAGAGGAACATTTCGGGAGGATATGCACAAACCTACTAGGCTGCTATACAAGCCATTAGAATGAACAAACAACAGATTCTGCGTATGTACAATTGCGGCGTTTTGTTTCACTACTTGCCCGCTGGTACAGATAGGATACATGATTAAAGCTATGTGATGAAACATTCGGTATAAACCTGTACATGACTCTTCCAATTCCAAGCAAGTTGTTTT-GAAGGTCTGTCCAGTCGACCGGGTATGCTTCTGTGTTAGTAAATGTTTCCTGTTCACACTTTTTTCAGCTCACGACT-GGCT-ATCTCTATTTATCCCGCG-CATAGGCT-CCCTGAATGAGGTTGTTACCTGGCAAGTCAAGTTGCCAGGCCCAC-TGTTATCTCGTGTGAGTTTTCCTTTGAGGATGATTTTGACTAGAATACCTCC-GTGTGCCTTCACAAGAGGTGGTA-TGC-TGTGCACCA-GTTAAAACACGAGATAGGCGTCGGAGAAATACTTGAATGTGGTTGTAAATGCTAAGCCGATGCCTGTTGCATGTTGAAAAGAAGGCAACAAAACCATACAGAATGCTTCGAATCGCACGGAAAATCTGGTACAGAAGATCTTTCCATAGTGACCCCCAGATGGTAGTTTCAGATGCAAGTCCGGTCGATCCGGATGCAGAACCAACTTGATATAAGGAACTCAATGTAGACCAGGTCTCCCTCAGAACTCCAACAATGTCCACAAAAGAGTCTGCCACAAAACTTGCTATCGCAACAAC-AAGCCGGAAAGGTGCAGCTAGAATTTCTCCAAGAAGCCAAACGAAAGGGTACAGGACTGAATTTGCAACATTAAGCACAACACT-GAAGACCAGCCAAAAAGGCCATATAATCATCTGCATTGTACTGATAACTACACTGCATGAAGTCTCCATCGCCAACATGATAACTGAGCTCAGATGTCCTACTGTTTCAGCACAAAGGTTCCATAGCGGCAGGGTAAATTCAAGAACCTCCAAAATTGGGTCCCATGATTGGCTTTGTCAAAACACCTAGAGCAGATTTAGTAGCAGTTACAATCTTAAGAGACCATGTAAAAGCCTGCTGGAAGTTATGTAGAAAAAGCATGGTTCCAAGATACTTCAGTCGTGAAATCATTTCCCACGTCTCTATCCAGTCAAAGAAAGGGCCAAACAATC-TGATGC-AGTTGCCTTCAACATGGGGACATTCTTGTAGAGGTCATAAAATCCTATGAGAACAGTAACTATTGACATCAAGACATACAATGCCCTGGCAAGAGGACACATCCATGGGCGATATGTCTTGCAGAACACTGGATATGACTGGAGAAAAATGACCCATGAAGGAAGGCCATACTCTAGCAATGTTAACAGCCTCACATCAGAAAGTATTAATTCTTTTAGTCTGAAAGGGAGATCGTGGTCATCGAACCGGAATAAGATCAACACATCCTTATATGTGCTAGGCTCGAGCAGAGTCTTGCCACAATCATCATCACTGCAGCACGAGGAAGATGGAGATGATGAATGTGTTGGTGAGGTCACAACTTCAGAATATGATTCTTCAGACATATTATTTCCAGCATCAGATCTTATTATCTTTCTTCTCTTGTAAGGTCCAGAGCAAGGAGGTGGTGTGTATGAGGAGCTTGTAAAACTTGACGACTCTCTCATGCATTGACTAGGTCCAGAATCGTCATCATCACTCTGTACATTCTCACTGTCCCCTTCAGGTGTTGAGAAATAATTCTGAGCGTCATAAAACACATTTCCTTTAGGAGAGATGCTGTTCAAATAATCCTGTAGGAGCTGGCATTCAGAGTAATTTCCAGAAAACCATGAAGTGATTAATGATGAAGCTTGGTTGACACTCTCAAATTCCCATCTCTTCATTGTTTTAGCTTCCACTGCCATAGAAGTATCAGTCTGAAGTTCATTGAAATAGTTCATGCCGCGCACATCAGCCCAGTCTACCTCAAAAATTATAAAGCCATATAAGGTTCGGTGCAGTTCCTTGTTCAGCAGGCGAGAATCCTTCAGCCTATTCACATGAAGCTTTTTATTCCGCATGGCATCATCAATTAAGGTATACCATCTGGATGATGGATTCCACAAATGAGAACCATGTCTAGGATCTTTAGAGAATACAAGTTTCTTCCCAGTTTCATCTCCCTTTCTCCTAGTTCT-AGTGTTTGC-AAAAGGTGAAAGTCTTGACTTTGTGACCATCAA-TTGCCACAGGTGAGC-AGGTTTTGTGTCCTGGTCTTGCAGCCATGGCCGGTTATCAAGCAATATGAGAAACTTCTTCGTATGAGGGCACAAAAATATAGTAAGTTCAGCAAGATATGATTGTAAATCCCCGATTTGCAAGCTCGTAAGGGGGAAGAAATGCCGCTTCCCGCCGCTCTCCATCACGCCGACTCCACCACCTCCCTGCGCAGAGGTCAGAGGCATCCCATGGTGATGCCTATCCGCATGCCAAGGTGGCCAGAGTTAATGGCCACCCCCGGTGGGGTAAATACGCCGCCTACCTCCCCCTGCTCCAC] [-] EMBL C97392 [TTTNTTTTTNTTTANGNCAACCGTGTTATGGAAATTGATGCTTAGCTATTTAGCTAATACTCGGATGTAATTACAAAATTGTTGTTCAGAGGAACATTTCGGGAGGATATGCACAAACCTACTAGGCTGCTATACAAGCCATTAGAATGAACAAACAACAGATTCTGCGTATGTACAATTGCGGCGTTTTGTTTCACTACTTGCCCGCTGGTACAGATAGGATACATGATTAAAGCTATGTGATGAAACATTCGGTATAAACCTGTACATGACTCTTCCAATTCCAAGCAAGTTGTTTTGGAAGGTCTGTCCAGTCGANCGGGTATGACTCTGTGTTAGTAAATGTTTCC GTTCACACTTTTTTCAGCTCACGACTGGGCTNATCTCTATTTATCCCGCGNCATAGGCTACCCTGn ] [+] EMBL CF321190 [ TTTTTTTTGGACAACCGTGTTATGGAAATTGATGCTTAGCTATTTAGCTAATACTCGGATGTAATTACAAAATTGTTGTTCAGAGGAACATTTCGGGAGGATATGCACAAACCTACCAGGCTGCTATACAAGCCATTAGAATGAACAAACAACAGATTCTGCGTATGTACAATTGCGGCGTTTTGTTTCACTACTTGCCCGCTGGTACAGATAGGATACATGATTAAAGCTATGTGATGAAACATTCGGTATAAACCTGTACATGACTCTTCCAATTCCAAGCAAGTTGTTTT GAAGGTCTGTCCAGTCGACCGGGTATGCTTCTGTGTTAGTAAATGTTTCCTGTTCACACTTTTTTCAGCTCACGACT GGCT ATCTCTATTTATCCCGCG CATAGGCT CCCTGAATGAGGTTGTTACCTGGCAAGTCAAGTTGCCAGGCCCAC TGTTATCTCGTGTGAGTTTTCCTTTGAGGA ] [+] EMBL CF312150 [ ttTTTTATGGAAATTGATGCTTAGCTATTTAGCTAATACTCGGATGTAATTACAAAATTGTTGTTCAGAGGAACATTTCGGGAGGATATGCACAAACCTACTAGGCTGCTATACAAGCCATTAGAATGAACAAACAACAGATTCTGCGTATGTACAATTGCGGCGTTTTGTTTCACTACTTGCCCGCTGGTACAGATAGGATACATGATTAAAGCTATGTGATGAAACATTCGGTATAAACCTGTACATGACTCTTCCAATTCCAAGCAAGTTGTTTT GAAGGTCTGTCCAGTCGACCGGGTATGCTTCTGTGTTAGTAAATGTTTCCTGTTCACACTTTTTTCAGCTCACGACT GGCT ATCTCTATTTATCCCGCG CATAGG ] [-] EMBL BQ908221 [ TTTTTTTGAAATTGATGCTTAGCTATTTAGCTAATACTCGGATGTAATTACAAAATTGTTGTTCAGAGGAACATTTCGGGAGGATATGCACAAACCTACTAGGCTGCTATACAAGCCATTAGAATGAACAAACAACAGATTCTGCGTATGTACAATTGCGGCGTTTGGTTTCACTACTTGCCCGCTGGTACAGATAGGATACATGATTAAAGCTATGTGATGAAACATTCGGTATAAACCTGTACATGACTCTTCCAATTCCAAGCAAGTTGTTTT GAAGGTCTGTCCAGTCGACCGGGTATGCTTCTGTGTTAGTAAATGTTTCCTGTTCACACTTTTTTCAGCTCACGACT GGCT ATCTCTATTTATCCCGCG CATAGGCT CTCTGAATGAGGTTGTTACCTGGCAAGTCAAGTTGCCAGGCCCACGTGTTATCTCGTGTGAGTTTTCCTTTGAGGATGATTTTGACTAGAATACCTCCGGTGTG ] [-] EMBL BI806012 [ tTTTTATGGAAA TGATGCTTAGCTATTTAGCTAATACTCGGATGTAATTACNAAA TG TGTTCAGAGGAACATTTCGGGAGGATATGCACAAACCTACTAGGCTGCTATACAAGCCATTAGAATGAACAAACAACAGATTCTGCGTATGTACAATTGCGGCG TTTGTTTCACTACTTGCCCGCTGGTACAGATAGGATACATGATTAAAGCTATGTGATGAAACATTCGGTATAAACCTGTACATGACTCTTCCAATTCCAAGCAAGTTGTTTT GAAGGTCTGTCCAGTCGACCGGGTATGCTTCTGTGTTAGTAAATGTTTCCTGTTCACACTTTTTTCAGCTCACGACT GGCT ATCTCTATTTATCCCGCG CATAGGCT CCCTGAATGAGGTTGTTACCTGGCAAGTCAAGTTGCCAGG CCAC TGTTATCTCGTGTGAGTTTTCCTTTGAGGATGATTTTGACTAGAATACCTCC G GTG CTTCACAAGAGGTGGTATTGCTTGTGCACCANGTTAAAACcc ] [+] EMBL CB636139 [ GATGCTTAGCTATTTAGCTAATACTCGGATGTAATTACAAAATTGTTGTTCAGAGGAACATTTCGGGAGGATATGCACAAACCTACTAGGCTGCTATACAAGCCATTAGAATGAACAAACAACAGATTCTGCGTATGTACAATTGCGGCGTTTTGTTTCACTACTTGCCCGCTGGTACAGATAGGATACATGATTAAAGCTATGTGATGAAACATTCGGTATAAACCTGTACATGACTCTTCCAATTCCAAGCAAGTTGTTTT GAAGGTCTGTCCAGTCGACCGGGTATGCTTCTGTGTTAGTAAATGTTTCCTGTTCACACTTTTTTCAGCTCACGACT GGCT ATCTCTATTTATCCCGCG CATAGGCT CCCTGAATGAGGTTGTTACCTGGCAAGTCAAGTTGCCAGGCCCAC TGTTATCTCGTGTGAGTTTTCCTTTGAGGATGATTTTGACTAGAATACCTCC GTGTGCCTTCACAAGAGGTGGTA TGC TGTGCACCA NTTAAAACACGA ] [+] EMBL CB671217 [ GATGCTTAGCTATTTAGCTAATACTCGGATGTAATTACAAAATTGTTGTTCAGAGGAACATTTCGGGAGGATATGCACAAACCTACTAGGCTGCTATACAAGCCATTAGAATGAACAAACAACAGATTCTGCGTATGTACAATTGCGGCGTTTTGTTTCACTACTTGCCCGCTGGTACAGATAGGATACATGATTAAAGCTATGTGATGAAACATTCGGTATAAACCTGTACATGACTCTTCCAATTCCAAGCAAGTTGTTTT GAAGGTCTGTCCAGTCGACCGGGTATGCTTCTGTGTTAGTAAATGTTTCCTGTTCACACTTTTTTCAGCTCACGACT GGCT ATCTCTATTTATCCCGCG CATAGGCT CCCTGAATGAGGTTGTTACCTGGCAAGTCAAGTTGCCAGGCCCAC TGTTATCTCGTGTGAGTTTTCCTTTGAGGATGATTTTGACTAGAATACCTCC GTGTGCCTTCACAAGAGGTGGTA TGC TGTGCACCA GTTAAAACACGAGATAGGCGTCGGAGAAATACTTGAATGTGGTTGTAAATGCTAAGCCGATGCCTGTTGCATGTTGAAAAGAAGGCAACAAAACCATACAGAATGCTTCGAATCGCACGGAAAATCTGGTACAGAAGATCTTTCCATAGTGACCCCCAGATGGTAGTTTCAGATGCAAGTCCGGTCGATCCGGATGCAGAACCAACTTGATATAAGGAACTCAATGTAGACCAGGTCTCCCTCAGAACTCCAACAATGTCCACAAAAGAGTCTGCCACAAAA ] [-] EMBL CF321189 [ TTGACTAGAATACCTCC GTGTGCCTTCACAAGAGGTGGTA TGC TGTGCACCA GTTAAAACACGAGATAGGCGTCGGAGAAATACTTGAATGTGGTTGTAAATGCTAAGCCGATGCCTGTTGCATGTTGAAAAGAAGGCAACAAAACCATACAGAATGCTTCGAATCGCACGGAAAATCTGGTACAGAAGATCTTTCCATAGTGACCCCCAGATGGTAGTTTCAGATGCAAGTCCGGTCGATCCGGATGCAGAACCAACTTGATATAAGGAACTCAATGTAGACCAGGTCTCCCTCAGAACTCCAACAATGTCCACAAAAGAGTCTGCCACAAAACTTGCTATCGCAACAAC AAGCCGGAAAGGTGCAGCTAGAATTTCTCCAAGAAGCCAAACGAAAGGGTACAGGACTGAATTTGCAACATTAAGCACAACACT GAAGACCAGCCAAAAAGGCCATATAATCATCTGCATTGTACTGAT ] [-] EMBL CF312149 [ AGTCTGCCACAAAACTTGCTATCGCAACAACAAAGCCGGAAAGGTGCAGCTAGAATTTCTCCAAGAAGCCAAACGANAGGGTACAGGACTGAATTTGCAACATTAAGCACAACACTNGAAGACCAGCCAAAAAGGCCATATAATCATCTGCATTGTACTGATAACTACACTGCATGAAGTCTCCATCGCCAACATGATAACTGAGCTCAGATGTCCTACTGTTTCAGCACAAAGGTTCCATAGCGGCAGGGTAAATTCAAGAACCTCCAAAATTGGGTCCCATGATTGGCTTTGTCAAAACACCTAGAGCAGATTTAGTAGCAGTTACAATCTTAAGAGACCATGTAAAAGCCTGCTGGAAGTTATGTAGAAAAAGCATGGTTCCAAGATACTTCAGTCGTGAAATCATTTCCCACGTCTCTATCCAGTCAAAGAAAGGGCCAAACAATCTTGATGC AGTTGCCTTCAACATGGGGACATTCTTGTAGAGGTCATAAAATCCTATGAGAACAGTAACTATTGACATCAAGACATACAATGCCCTGGCAAGAGGACACATCCATGGGCGATATGTC ] [-] EMBL CF305770 [ CCATATAATCATCTGCATTGTACTGATAACTACACTGCATGAAGTCTCCATCGCCAACATGATAACTGAGCTCAGATGTCCTACTGTTTCAGCACAAAGGTTCCATAGCGGCAGGGTAAATTCAAGAACCTCCAAAATT GGTCCCATGATTGGCTTTGTCAAAACACTTAGAGCAGATTTAGTAGCAGTTACAATCTTAAGAGACCATGTAAAAGCCTGCTGGAAGTTATGTAGAAAAAGCATGGTTCCAAGATACTTCAGTCGTGAAATCATTTCCCACGTCTCTATCCAGTCAAAGAAAGGGCCAAACAATCTTGATGC AGTTGCCTTCAACATGGGGACATTCTTGTAGAGGTCATAAAATCCTATGAGAACAGTAACTATTGACATCAAGACATACAATGCCCTGGCAAGAGGACACATCCATGGGCGATATGTCTTGCAGAACACTGGATATGACTGGAGAAAAATGACCCATGAAGGAAGGCCATACTCTAGCAATGTTAACAGCCTCACATCAGAAAGTATTAAATAATTTAGTCTGAAAGGGAGATCGTGGTCATCGAACCGGAATAAGATCAACACATCCTTATATGTGCTAGGCTCGAGCAGAGTCTTGCCACAATCATCATCACTGCAGCACGAGGAAGATGGAGATGATGAATGTGTTGGTG ] [-] EMBL CF305808 [ AAAAGCCTGCTGGAAGTTATGTAGAAAAAGCATGGTTCCAAGATACTTCAGTCGTGAAATCATTTCCCACGTCTCTATCCAGTCAAAGAAAGGGCCAAACAATCTTGATGC AGTTGCCTTCAACATGGGGACATTCTTGTAGAGGTCATAAAATCCTATGAGAACAGTAACTATTGACATCAAGACATACAATGCCCTGGCAAGAGGACACATCCATGGGCGATATGTCTTGCAGAACACTGGATATGACTGGAGAAAAATGACCCATGAAGGAAGGCCATACTCTAGCAATGTTAACAGCCTCACATCAGAAAGTAAAAATTCTTTTAGTCTGAAAGGGAGATCGTGGTCATCGAACCGGAATAAGATCAACACATCCTTATATGTGCTAGGCTCGAGCAGAGTCTTGCCACAATCATCATCACTGCAGCACGAGGAAGATGGAGATGATGAATGTGTTGG ] [-] EMBL CB661653 [ AGAAAGGGCCAAACAATC TGATGCNAGTTGCCTTCAACATGGGGACATTCTTGTAGAGGTCATAAAATCCTATGAGAACAGTAACTATTGACATCAAGACATACAATGCCCTGGCAAGAGGACACATCCATGGGCGATATGTCTTGCAGAACACTGGATATGACTGGAGAAAAATGACCCATGAAGGAAGGCCATACTCTAGCAATGTTAACAGCCTCACATCAGAAAGTATTACTTCTTTTAGTCTGAAAGGGAGATCGTGGTCATCGAACCGGAATAAGATCAACACATCCTTATATGTGCTAGGCTCGAGCAGAGTCTTGCCACAATCATCATCACTGCAGCACGAGGAAGATGGAGATGATGAATGTGTTGGTGAGGTCACAACTTCAGAATATGATTCTTCAGACATATTATTTCCAGCATCAGATCTTATTATCTTTCTTCTCTTGTAAGGTCCAGAGCAAGGAGGTGGTGTGTATGAGGAGCTTGTAAAACTTGACGACTCTCTCATGCATTGACTAGGTCCAGAATCGTCATCATCACTCTGTACATTCTCACTGTCCCCTTCAGGTGTTGAGAAATAATTCTGAGCGTCATAAAACACATTTCCTTTAGGAGAGATGCTGTTCAAATAATCCTGTAGGAGCTGGCATTCAGAGTAATTTCCAGAAAACCATGAAGTGATTAATGATGAAGCTTGGTTGACACTCTCAAATTCCCATCTCTTCATTGTTTTAGCTTCCACTGCCATAGAAGTATCAGTCTGAAGTTCATTGAAATAGT ] [-] EMBL CB636138 [ CCCATGAAGGAAGGCCATACTCTAGCAATGTTAACAGCCTCACATCAGAAAGTATTACTTCTTTTAGTCTGAAAGGGAGATCGTGGTCATCGAACCGGAATAAGATCAACACATCCTTATATGTGCTAGGCTCGAGCAGAGTCTTGCCACAATCATCATCACTGCAGCACGAGGAAGATGGAGATGATGAATGTGTTGGTGAGGTCACAACTTCAGAATATGATTCTTCAGACATATTATTTCCAGCATCAGATCTTATTATCTTTCTTCTCTTGTAAGGTCCAGAGCAAGGAGGTGGTGTGTATGAGGAGCTTGTAAAACTTGACGACTCTCTCATGCATTGACTAGGTCCAGAATCGTCATCATCACTCTGTACATTCTCACTGTCCCCTTCAGGTGTTGAGAAATAATTCTGAGCGTCATAAAACACATTTCCTTTAGGAGAGATGCTGTTCAAATAATCCTGTAGGAGCTGGCATTCAGAGTAATTTCCAGAAAACCATGAAGTGATTAATGATGAAGCTTGGTTGACA ] [-] EMBL CF306474 [ GTCATCGAACCGGAATAAGATCAACACATCCTTATATGTGCTAGGCTCGAGCAGAGTCTTGCCACAATCATCATCACTGCAGCACGAGGAAGATGGAGATGATGAATGTGTTGGTGAGGTCACAACTTCAGAATATGATTCTTCAGACATATTATTTCCAGCATCAGATCTTATTATCTTTCTTCTCTTGTAAGGTCCAGAGCAAGGAGGTGGTGTGTATGAGGAGCTTGTAAAACTTGACGACTCTCTCATGCATTGACTAGGTCCAGAATCGTCATCATCACTCTGTACATTCTCACTGTCCCCTTCAGGTGTTGAGAAATAATTCTGAGCGTCATAAAACACATTTCCTTTAGGAGAGATGCTGTTCAAATAATCCTGTAGGAGCTGGCATTCAGAGTAATTTCCAGAAAACCATGAAGTGATTAATGATGAAGCTTGGTTGACACTCTCAAATTCCCATCTCTTCATTGTTTTAGCTTCCACTGCCATAGAAGTATCAGTCTGAAGTTCATTGAAATAGTTCATGCCGCGCACATCAGCCCAGTCTACCTCAAAAATTATAAAGCCATATAAGGTTCGGTGCAGTTCCcct ] [+] EMBL CB626696 [ TGCCACTATCATCATCACTGCAGCACGAGGAAGATGGAGATGACGAATGTGTTGGTGAGGTCACAACTTCAGAATATGATTCTTCAGACATATTATTTCCAGCAGCAGATCTTATTATCTTTCTTCTCTTGTAAGGTCCAGAGCAAGGAGGTGGTGTGTATGAGGAGCTTGTAAAACTTGACGACTCTCTCATGCATTGACTAGGTCCAGAATCGTCATCTTCACTCTGTACATTCTCACTGTCCCCTTCAGGTGTTGAGAAATAATTCTGAGCGTCATAAAACACATTTCCTTTAGGAGAGATGCTGTTCAAATAATCCTGTAGGAGCTGGCATTCAGAGTAATTTCCAGAAAACCATGAAGTGATTAATGATGAAGCTTGGTTGACACTCTCAAATTCCCATCTCTTCATTGTTTTAGCTTCCACTGCCATAGAAGTATCAGTCTGAAGTTCATTGAAATAGTTCATGCCGCGCACATCAGCCCAGTCTACCTCAAAAATTATAAAGCCATATAAGGTTCGGTGCAGTTCCTTGTTCAGCAGGCGAGAATCCTTCAGCCTATTCACATGAAGCTTTTTATTCCGCATGGCATCATCAATTAAGGTATACCATCTGGATGATGGATTCCACAAATGAGAACCATGTCTAGGATCTTTAGAGAATACAAGTTTCTTCCCAGTTTCATCTCCCTTTCTCCTAGTTCT AGTGTTTGC AAAAGGTGAAAGTCTTGACTTTGTGACCATCAA TTGCCACAGGTGAGC AGGTTTTGTGTCCTGGTCTTGCAGCCATGGCCGGTTATCAAGCAATATGAGAAAC ] [-] EMBL CB671216 [ AGGAGGTGGTGTGTATGAGGAGCTTGTAAAACTNGACGACTCTCTCATGCATTGACTAGGTCCAGAATCGTCATCATCACTCTGTACATTCTCACTGTCCCCTTCAGGTGTTGAGAAATAATTCTGAGCGTCATAAAACACATTTCCTTTAGGAGAGATGCTGTTCAAATAATCCTGTAGGAGCTGGCATTCAGAGTAATTTCCAGAAAACCATGAAGTGATTAATGATGAAGCTTGGTTGACACTCTCAAATTCCCATCTCTTCATTGTTTTAGCTTCCACTGCCATAGAAGTATCAGTCTGAAGTTCATTGAAATAGTTCATGCCGCGCACATCAGCCCAGTCTACCTCAAAAATTATAAAGCCATATAAGGTTCGGTGCAGTTCCTTGTTCAGCAGGCGAGAATCCTTCAGCCTATTCACATGAAGCTTTTTATTCCGCATGGCATCATCAATTAAGGTATACCATCTGGATGATGGATTCCACAAATGAGAACCATGTCTAGGATCTTTAGAGAATACAAGTTTCTTCCCAGTTTCATCTCCCTTTCTCCTAGTTCT AGTGTTTGC AAAAGGTGAAAGTCTTGACTTTGTGACCATCAA TTGCCACAGGTGAGC AGGTTTTGTGTCCTGGTCTTGCAGCCATGGCCGGTTATCAAGCAATATGAGAAACTTCTTCGTATGAGGGCACAAAAATATAGTAAGTTCAGCAAGATATGATTGTAAATCCCCGATTTGCAAGCTCGTAAGGGGGAAGAAATGCCGCTTCCCGCCGCTCTCCATCACGCCGACTCCACCACC ] [-] EMBL CB626695 [ ATCCTGTAGGAGCTGGCATTCAGAGTAATTTCCAGAAAACCATGAAGTGATTAATGATGAAGCTTGGTTGACACTCTCAAATTCCCATCTGTTCATTGTTTTAGCTTCCACTGCCATAGAAGTATCAGTCTGAAGTTCATTGAAATAGTTCATGCCGCGCACATCAGCCCAGTATACCTCAAAAATTATAAAGCCATATAAGGTTCGGTGCAGTTCCTTGTTCAGCAGGCGAGAATCCTTCAGCCTATTCACATGAAGCTTTTTATTCCGCATGGCATCATCAATTAAGGTATACCATCTGGATGATGGATTCCACAAATGAGAACCATGTCTAGGATCTTTAGAGAATACAAGTTTCTTCCCAGTTTCATCTCCCTTTCTCCTAGTTAT AGTGTTTGC AAAAGGTGAAAGTCTTGACTTTGTGACCATCAA TTGCCACAGGTGAGC AGGTTTTGTGTCCTGGTCTTGCAGCCATGGCCGGTTATCAAGCAATATGAGAAACTTCTTCGTATGAGGGCACAAAAATATAGTAAGTTCAGCAAGATATGATTGTAAATCCCCGATTTGCAAGCTCGTAAGGGGGAAGAAATGCCGCTTCACGCCGCTCTCCATCACGCCGACTCCACCACCTCCCTGCGCAGAGGTCAGAGGCATCCCATGGTGATGCCTATCCGCATGCCAAGGTGGCCAGAGTTAATGGCCACCCCCGGTGGGGTAAATACGCCGCCTACCTCCCCCTGCTCCAC] [-] EMBL C74569 [ CTTCCCAGTTNAATC NCCTTTCTCCTAAGTCTAAGTGTTTGCAAAAAGGTGAAAGTCTTGACTTTGTGACCATCAATTTGCCACAGGTGAGCAAGGTTTTGTGTCCTGGTCTTGCAGCCATGGCCGGTTATCAAGCAATATGAGAAACTTC TCGTATGAGGGCACAAAAATATAGTAAGTTCAGCAAGATATGATTGTAAATCCCCGATTTGCAAGCTCGTAAGGGGGAAGAAATGCCGCTTCCCGCCGCTCTCCATCACGCCGACTCCACCACCTCCCTGCGCAGAGGTCAGAGGNATCCCATGGTGATGCCTATCCGCATGCCAAGGTGGCCAGAGTTAATGGCCACCACCGGTGGGGTAAA ] consensusID : consensus_15215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [ATCGATACTATACTGGAACGGTTCAATAATTCAGGGTTTGTCATTTCTCCCTACATATTCATGCAGAGATGATAAAACAAACTTACTATACCATCACGTTGTTGTTTGCAAAACAATCTAGGTTTTATTCCTAGGTTTAGTTGCCTATCGTAGGTTGATAATTTTGTGTTTTGTGCACATTCATCATACCTTATCGACTGGAAATCTGGAATTGTGGCTTTACTTTACTTCTAGGTTCAGTAGGCTGCAATACATGACTCCGTCCGTACACTGGAGGAAAGAAAATGTTAAATACTGTGTTCCTGATTAATTTTATTTTGATCTGCTATTGTCCACCTGGATCATATGATATCAAACAGTGAACAATGTGGCGGTTATTTTATCCTTTTTCTGTACATCCATTGGACTGCATTTGTTGTGCAAAGTCGTATGACCTTAAGTTGTATTGCAATTATCTTAATTTCTGAGGTGGGCAATTGTGTTAAGAATTCTTGCAAACTGCAAGTTTTGTTTTACTCCTCACAGTTTTGCTTGCATTTACTAACCTCATGATCTTAAAGTGCAATGTAAATTTGGATTTTCATCTATATTACAGTTAGTTAGTCTGATATAATTATTATATGCAGGGATTTACAATCATATCTTGCTGAACTACTATATTTTTGTGCCCTCATACGAAGAAGTTTCTCATATTGCTTGATAACCGG] [+] EMBL CF306341 [ATCGATACTATACTGGAACGGTTCAATAATTCAGGGTTTGTCATTTCTCCCTACATATTCATGCAGAGATGATAAAACAAACTTACTATACCATCACGTTGTTGTTTGCAAAACAATCTAGGTTTTATTCCTAGGTTTAGTTGCCTATCGTAGGTTGATAATTTTGTGTTTTGTGCACATTCATCATACCTTATCGACTGGAAATCTGGAATTGTGGCTTTACTTTACTTCTAGGTTCAGTAGGCTGCAATACATGACTCCGTCCGTACACTGGAGGAAAGAAAATGTTAAATACTGTGTTCCTGATTAATTTTATTTTGATCTGCTATTGTCCACCTGGATCATATGATATCAAACAGTGAACAATGTGGCGGTTATTTTATCCTTTTTCTGTACATCCATTGGACTGCATTTGTTGTGCAAAGTCGTATGACCTTAAGTTGTATTGCAATTATCTTAATTTCTGAGGTGGGCAATTGTGTTAAGAATTCTTGCAAACTGCAAGTTTTGTTTTACTCCTCACAGTTTTGCTTGCATTTACTAACCTCATGATCTTAAAGTGCAATGTAAATTTGGATTTTCATCTATATTACAGTTAGTTAGTCTGATATAATTATTATATGCAGGGATTTACAATCATATCTTGCTGAACTACTATATTTTTGTGCCCTCATACGAAGAAGTTTCTCATATTGCTTGATAACCGG] consensusID : consensus_15215#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [CAATGAAGCATAACTCAGATTGTCATAACAGACTGTTATATGAACTAGTGATTTCAATTCCAAGGGTCATTTTTACCCCTAAACTTCATGAAAAAAAATCATGATAGACTGTAACTTTTTTAAAAAAGTAAGGACTTACAGGATGATTTTGACTAGAATACCTCCGTGTGCCTTCACAAGAGGTGGTATGCTGTGCACCAGTTAAAACACGAGATAGGCGTCGGAGAAATACTTGAATGTGGTTGTAAATGCTAAGCCGATGCCTGTTGCATGTTGAAAAGAAGGCAACAAAACCATACAG] [-] EMBL C28131 [CAATGAAGCATAACTCAGATTGTCATAACAGACTGTTATATGAACTAGTGATTTCAATTCCAAGGGTCATTTTTACCCCTAAACTTCATGAAAAAAAATCATGATAGACTGTAACTTTTTTAAAAAAGTAAGGACTTACAGGATGATTTTGACTAGAATACCTCCGTGTGCCTTCACAAGAGGTGGTATGCTGTGCACCAGTTAAAACACGAGATAGGCGTCGGAGAAATACTTGAATGTGGTTGTAAATGCTAAGCCGATGCCTGTTGCATGTTGAAAAGAAGGCAACAAAACCATACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15215#0 TTTNTTTTTNTTTANGNCAACCGTTTTATGGAAATTGATGCTTAGCTATTTAGCTAATAC 60 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ----ATCGATACTATACTGGAACGGTTCAATAATTCAGGGTTTGTCATTTCTCCCTACAT 56 consensus_15215#0 TCGGATGTAATTACAAAATTGTTGTTCAGAGGAACATTTCGGGAGGATATGCACAAACCT 120 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ATTCATGCAGAGATGATAAAACAAACTTACTATACCATCACGTTGTTGTTTGCAAAACAA 116 consensus_15215#0 ACTAGGCTGCTATACAAGCCATTAGAATGAACAAACAACAGATTCTGCGTATGTACAATT 180 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 TCTAGGTTTTATTCCTAGGTTT---AGTTGCCTATCGTAGGTTGATAATTTTGTGTTTTG 173 consensus_15215#0 GCGGCGTTTTGTTTCACTACTTGCCCGCTGGTACAGATAGGATACATGATTAAAGCTATG 240 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 TGCACATTCATCATACCTTATCGACTGGAAATCTGGAATTGTGGCTTTACTTTACTTCTA 233 consensus_15215#0 TGATGAAACATTCGGTATAAACCTGTACATGACTCTTCCAATTCCAAGCAAGTTGTTTTG 300 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 GGTTCAGTAGGCTGCAATACATGACTCCGTCCGTACACTGGAGGAAAGAAAATGTTAAAT 293 consensus_15215#0 AAGGTCTGTCCAGTCGACCGGGTATGCTTCTGTGTTAGTAAA-T---GTTTCCTGTTCAC 356 consensus_15215#2 ----------CAATGAAGCATAACTCAGATTGTCATAACAGACT---GTTATATGAAC-T 46 consensus_15215#1 ACTGTGTTCCTGATTAATTTTATTTTGATCTGCTATTGTCCACCTGGATCATATGATATC 353 * * * ** * * * ** consensus_15215#0 ACTTTTTTCAGCTCACGACTGGCTATCTCTATTTATCCCGCGCATAGGC-TCCCTGAATG 415 consensus_15215#2 AGTGATTTCAATTC--CAAGGGTCATT----TTTACCCC-----TAAAC-TTCATGAAAA 94 consensus_15215#1 AAACAGTG-AACAATGTGGCGGTTATT-----TTATCCTTTTTCTGTACATCCATTGGAC 407 * * * ** ** *** ** * * * * * consensus_15215#0 AGGTTGTTACCTGGCAAGTCAAGTTGCCAGGCCCACTGTTATCTCGTGTGAGT-----TT 470 consensus_15215#2 AAAAT---------CATGATAGACTGTAA---CTTTTTTAAAAAAGTAAGGAC-----TT 137 consensus_15215#1 TGCAT-----TTGTTGTGCAAAGTCGTATGACCTTAAGTTGTATTGCAATTATCTTAATT 462 * * * * * * * ** consensus_15215#0 TCCTTTGAGGATGATTTTGACTAGAATACCTCC---------GTGTGCCTTCACAAGAGG 521 consensus_15215#2 AC-----AGGATGATTTTGACTAGAATACCTCC---------GTGTGCCTTCACAAGAGG 183 consensus_15215#1 TCTGAGGTGGGCAATTGTGTTAAGAATTCTTGCAAACTGCAAGTTTTGTTTTACTCCTCA 522 * ** *** ** ***** * * * ** * ** ** consensus_15215#0 TGGTATGCTGTGCACCAGTTAAAA-CACGAGATAGGCGTCGGAGAAATACTTGAATGTGG 580 consensus_15215#2 TGGTATGCTGTGCACCAGTTAAAA-CACGAGATAGGCGTCGGAGAAATACTTGAATGTGG 242 consensus_15215#1 CAGTTTTGCTTGCATTTACTAACCTCATGATCTTAAAGTGCAATGTAAATTTGGATTTTC 582 ** * **** *** ** ** * ** * * * *** ** * consensus_15215#0 TTGTAAATGCTAAGCCGAT-GCCTGTTGCA--TGTTGAAAAGAAGGCAACAAAACCATA- 636 consensus_15215#2 TTGTAAATGCTAAGCCGAT-GCCTGTTGCA--TGTTGAAAAGAAGGCAACAAAACCATA- 298 consensus_15215#1 ATCTATATTACAGTTAGTTAGTCTGATATAATTATTATATGCAGGGATTTACAATCATAT 642 * ** ** * * * * *** * * * ** * * ** * ** **** consensus_15215#0 CAGAATGCTTCGAATCGCACGGAAAATCTGGTACAGAAGATCTTTCCATAGTGACCCCCA 696 consensus_15215#2 CAG--------------------------------------------------------- 301 consensus_15215#1 CTTGCTGAACTACTATATTTTTGTGCCCTCATACGAAGAAGTTTCTCATATTGCTTGATA 702 * consensus_15215#0 GATGGTAGTTTCAGATGCAAGTCCGGTCGATCCGGATGCAGAACCAACTTGATATAAGGA 756 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ACCGG------------------------------------------------------- 707 consensus_15215#0 ACTCAATGTAGACCAGGTCTCCCTCAGAACTCCAACAATGTCCACAAAAGAGTCTGCCAC 816 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 AAAACTTGCTATCGCAACAACAAGCCGGAAAGGTGCAGCTAGAATTTCTCCAAGAAGCCA 876 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 AACGAAAGGGTACAGGACTGAATTTGCAACATTAAGCACAACACTGAAGACCAGCCAAAA 936 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 AGGCCATATAATCATCTGCATTGTACTGATAACTACACTGCATGAAGTCTCCATCGCCAA 996 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 CATGATAACTGAGCTCAGATGTCCTACTGTTTCAGCACAAAGGTTCCATAGCGGCAGGGT 1056 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 AAATTCAAGAACCTCCAAAATTGGGTCCCATGATTGGCTTTGTCAAAACACCTAGAGCAG 1116 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 ATTTAGTAGCAGTTACAATCTTAAGAGACCATGTAAAAGCCTGCTGGAAGTTATGTAGAA 1176 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 AAAGCATGGTTCCAAGATACTTCAGTCGTGAAATCATTTCCCACGTCTCTATCCAGTCAA 1236 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 AGAAAGGGCCAAACAATCTGATGCAGTTGCCTTCAACATGGGGACATTCTTGTAGAGGTC 1296 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 ATAAAATCCTATGAGAACAGTAACTATTGACATCAAGACATACAATGCCCTGGCAAGAGG 1356 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 ACACATCCATGGGCGATATGTCTTGCAGAACACTGGATATGACTGGAGAAAAATGACCCA 1416 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 TGAAGGAAGGCCATACTCTAGCAATGTTAACAGCCTCACATCAGAAAGTATTAATTCTTT 1476 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 TAGTCTGAAAGGGAGATCGTGGTCATCGAACCGGAATAAGATCAACACATCCTTATATGT 1536 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 GCTAGGCTCGAGCAGAGTCTTGCCACAATCATCATCACTGCAGCACGAGGAAGATGGAGA 1596 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 TGATGAATGTGTTGGTGAGGTCACAACTTCAGAATATGATTCTTCAGACATATTATTTCC 1656 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 AGCATCAGATCTTATTATCTTTCTTCTCTTGTAAGGTCCAGAGCAAGGAGGTGGTGTGTA 1716 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 TGAGGAGCTTGTAAAACTTGACGACTCTCTCATGCATTGACTAGGTCCAGAATCGTCATC 1776 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 ATCACTCTGTACATTCTCACTGTCCCCTTCAGGTGTTGAGAAATAATTCTGAGCGTCATA 1836 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 AAACACATTTCCTTTAGGAGAGATGCTGTTCAAATAATCCTGTAGGAGCTGGCATTCAGA 1896 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 GTAATTTCCAGAAAACCATGAAGTGATTAATGATGAAGCTTGGTTGACACTCTCAAATTC 1956 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 CCATCTCTTCATTGTTTTAGCTTCCACTGCCATAGAAGTATCAGTCTGAAGTTCATTGAA 2016 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 ATAGTTCATGCCGCGCACATCAGCCCAGTCTACCTCAAAAATTATAAAGCCATATAAGGT 2076 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 TCGGTGCAGTTCCTTGTTCAGCAGGCGAGAATCCTTCAGCCTATTCACATGAAGCTTTTT 2136 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 ATTCCGCATGGCATCATCAATTAAGGTATACCATCTGGATGATGGATTCCACAAATGAGA 2196 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 ACCATGTCTAGGATCTTTAGAGAATACAAGTTTCTTCCCAGTTTCATCTCCCTTTCTCCT 2256 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 AGTTCTAGTGTTTGCAAAAGGTGAAAGTCTTGACTTTGTGACCATCAATTGCCACAGGTG 2316 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 AGCAGGTTTTGTGTCCTGGTCTTGCAGCCATGGCCGGTTATCAAGCAATATGAGAAACTT 2376 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 CTTCGTATGAGGGCACAAAAATATAGTAAGTTCAGCAAGATATGATTGTAAATCCCCGAT 2436 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 TTGCAAGCTCGTAAGGGGGAAGAAATGCCGCTTCCCGCCGCTCTCCATCACGCCGACTCC 2496 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 ACCACCTCCCTGCGCAGAGGTCAGAGGCATCCCATGGTGATGCCTATCCGCATGCCAAGG 2556 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 TGGCCAGAGTTAATGGCCACCCCCGGTGGGGTAAATACGCCGCCTACCTCCCCCTGCTCC 2616 consensus_15215#2 ------------------------------------------------------------ consensus_15215#1 ------------------------------------------------------------ consensus_15215#0 AC 2618 consensus_15215#2 -- consensus_15215#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||