These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 566 fasta sequence [CCGGAAATCAGAAAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG-CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC-TTCGA-TGCGAAGCGG-TTGA-TTGG-T-A-GGAGGTTCTCCGACCCGTCCGTGC-AGAGTGACATGAAGCTATGGCCGTTC-AAGGTGGTGCCT-GGCCCCGGCGACAAGCCGAT-GATCGTCGTCCAGTACAAGGGCGANGAGAAGCAGTTCGCCGCGGAGGAGATCTCGTCCATGGTGCTGATCAAGATGAGGGAGATCGCGGAGGCCTANCTCGGCTCGTCCATCAAGAACGCCGTGGGT] [+] EMBL OSS3070A [CCGGAAATCAGAAAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG NGTGGGCGTNTGGCA ] [+] EMBL OSS3013A [CCGGAAATCAGAAAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTn ] [+] EMBL OSS3167A [CCGGAAATCAGAAAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTGNNGTGGGCGTNTGGCA ] [+] EMBL AU070018 [ GAAAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGANGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC TTCGA TGCGAA CGG TTGA TTGG T A GGAGGTTCTCCGACCCGTCCGTGC AGAGTGACATGAAGCTATGGCCGTTC AAGGTGGTGCCT GGCCCCGGCGACAAGCCGAT GATCGTCGTCCAGTA ] [+] EMBL OSS3619A [ AAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCNATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTNTGGCAGCACGACCGCNTGGAGATCATCGCCAACNACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACG CGCCAAGAACCAGGTCGCCATGAACCCAACCAACANCGTC TTCGA TGCGAAGGGGTTTGA TTGG T A GGAGGTTCTCCG ] [+] EMBL OSS3305A [ AAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATNTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGNACCANGACGTCGTACGTCGNCTTCACCGACAACGAGCGcn ] [+] EMBL C28596 [ AGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGTCTTCACCGACACCGAGCGGNTCATCGNCGACG CGTCAAG ] [+] EMBL AU069458 [ AGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCAATTATNCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGNATCGACCTGGGGACGACCTACTCGTG NGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACNACCAGGGGAACCGGACCACGCCGTCNTACGTNGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCGNCAAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC T ] [+] EMBL C28342 [ aaatATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCNTTTGCAATTATNCGCTTTCNATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGNATCGACCTGGGGACGACCTACTCGTG CGTGGGCNTNTGGCAACACGACCGNTTGGAGATCATCGCCAACNACCAGGGGAACCc ] [+] EMBL C97625 [ tatatatTTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGNCGTCGTACGTCGGCTTCACCGACANCGAGCGGCTCATCGGCGACGCGNCAAAGAACCAGGTCGCCATGAACCCAACCAACANCGTC TTCGATTGCGAAGGGT TTGATTTNG TAA GGAGGTTNTCCGACCCGTCCGTGA AGAGTGACATGA ] [+] EMBL C97797 [ CCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTNCAATTATNCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGAATCGACCTGGGGACGACCTACTCGTG NGTGGGCGTGTGGCAGCACGACCGCNTGGAGATCATCGCC ACGACCAGGGGAA ] [+] EMBL AU161252 [ CCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCNATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG GGTGGGCGTNTGGCAGCACGACCGCNTGGAGATCATCGNCAACNACCAGGGGAACCGGACCACGCCGTCGTACGTNGCCTTCACCGACACCGAGCGGCTCATCGGCGACG CGCCAAGAACCAGGTCGCCATGAACCCAACCAACAACGTC TTCGA TNCG AGGGT TTGA TTTG T A GGAGGTTCTCCGACCCGTCCGTTCAAGAGTNACATGAAGCTATGGCCGTTN AA GTGGTGCCT ] [+] EMBL AU069368 [ CCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACG CGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTCTTTCGA TGCGAA CGG TTGA TTGG T A GGAGGTTCTCCGACCCGTCCGTGC AGAGTGACATGAAGCTATGGCCGTTC ] [+] EMBL AU069318 [ CACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCNATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTNTGGCAGCACGACCGCNTGGAGATCATCGCCAACNACCAGGGGAACCGGACCACGCCGTCGTACGTNGCCTTCACCGACACCGAGCGGCTCATCGGCGACG CGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC TTCGA TGCGAGGGGT TTGATTTGG T A GGAGGTTCTNCGACCCGTCCGTGC AGAGTTACAT ] [+] EMBL AU161185 [ CAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC TTCGA TGCGAACGGG TTGA TTGGTT A GGAGGTTCTCCGACCCGTCCGTGC AGAGTGACATGAAGCTATGGCCGTTCAAAGGTGGTGCCTGGGCCCCGGCGACAAGCCGATGGATCGTCGTCCAGTACAAGGGCGANGAGAAGCAGTTCGCCGCGGAGGAGATCTCGTCCATGGTGCTGATCAAGATGAGGGAGATCGCGGAGGCCTANCTCGGCTCGTCCATCAAGAACGCCGTGGGT] [+] EMBL AU161382 [ CAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC TTCGA TGCGAAGCGG TTGA TTGG T A GGAGGGTCTTCGACCCGTCCGTGC AGAGTGACATGAA CTATGGCCG TC AANGTGGTGCCT GG CCCGGCGACAAGCCGAT GATCGTCGTCCAGT CAAGGGCGANGAGAAGCAGNTCGCCGCGGANGAGATCTCGTCCATGGTGCTGATCAAGATGA GGAAATCGCGGAGGC ] [+] EMBL AU162019 [ AATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC TTCGA TGCGAA CGG TTGA TTGG T A GGAGGTTCTCCGACCCGTCCGTGC AGAGTGACATGAAGCTATGGCCGTTC AAGGTGGTGCCT GGCCCCGGCGACAAGCCGAT GATCGTCGTCCAGTACAAGGGCGAGGAGAAGCAn ] [+] EMBL AU163327 [ GCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTNACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTCTTTCGA TGCGAAGCGG TTGA TTGG T AGGGAGGTTCTCCGACCCGTCCGTGC ANAGTGAC ] [+] EMBL AU069451 [ CGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGANANGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTNGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACNCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACNCCGCCAAGAACCAGGTCGCCATNAACCCAACCAACACCGTC TTCGA TGCGAA CGG TTGA TTGG T A AGAGGTTCTCCGACCCGTCCGTGC AGAGTGACATNAAGCTAT ] consensusID : consensus_15222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [CAATCTCAAACGCAGATGCGAAGGGNTTGATTGGTAGGAGGTTCTCCGACCCGTCCGTGCAGAGTGACATGAAGCTATGGCCGTTCAAGGTGGTGCCTGGCCCCGGCGACAAGCGANTGATCGTCGTCCAGTACAAGGGCGAGGAGAAGCAGTTCGCCGCGGAGGAGATCTCGTCCATGGTGCTGATCAAGATGAGGGAGATCGCGGAGGCCTACCTCGGCTCGTCCATCAAGAAC] [+] EMBL C28731 [CAATCTCAAACGCAGATGCGAAGGGNTTGATTGGTAGGAGGTTCTCCGACCCGTCCGTGCAGAGTGACATGAAGCTATGGCCGTTCAAGGTGGTGCCTGGCCCCGGCGACAAGCGANTGATCGTCGTCCAGTACAAGGGCGAGGAGAAGCAGTTCGCCGCGGAGGAGATCTCGTCCATGGTGCTGATCAAGATGAGGGAGATCGCGGAGGCCTACCTCGGCTCGTCCATCAAGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15222#0 CCGGAAATCAGAAAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCG 60 consensus_15222#1 ------------------------------------------------------------ consensus_15222#0 CGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGG 120 consensus_15222#1 ------------------------------------------------------------ consensus_15222#0 AGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGT 180 consensus_15222#1 ------------------------------------------------------------ consensus_15222#0 GCGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGA 240 consensus_15222#1 ------------------------------------------------------------ consensus_15222#0 CCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGA 300 consensus_15222#1 ------------------------------------------------------------ consensus_15222#0 ACCAGGTCGCCATGAACCCAACCAACACCGTCTTCGATGCGAAGCGGTTGATTGGTAGGA 360 consensus_15222#1 ---------------------CAATCTCAAACGCAGATGCGAAGGGNTTGATTGGTAGGA 39 * * * * * ********* * ************* consensus_15222#0 GGTTCTCCGACCCGTCCGTGCAGAGTGACATGAAGCTATGGCCGTTCAAGGTGGTGCCTG 420 consensus_15222#1 GGTTCTCCGACCCGTCCGTGCAGAGTGACATGAAGCTATGGCCGTTCAAGGTGGTGCCTG 99 ************************************************************ consensus_15222#0 GCCCCGGCGACAAGCCGATGATCGTCGTCCAGTACAAGGGCGANGAGAAGCAGTTCGCCG 480 consensus_15222#1 GCCCCGGCGACAAGCGANTGATCGTCGTCCAGTACAAGGGCGAGGAGAAGCAGTTCGCCG 159 *************** ************************* **************** consensus_15222#0 CGGAGGAGATCTCGTCCATGGTGCTGATCAAGATGAGGGAGATCGCGGAGGCCTANCTCG 540 consensus_15222#1 CGGAGGAGATCTCGTCCATGGTGCTGATCAAGATGAGGGAGATCGCGGAGGCCTACCTCG 219 ******************************************************* **** consensus_15222#0 GCTCGTCCATCAAGAACGCCGTGGGT 566 consensus_15222#1 GCTCGTCCATCAAGAAC--------- 236 ***************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||