These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 681 fasta sequence [ACTGCTCATCGATTTCTCTTCCTGACGGCGACAATGGCGTCGAAGAACAGCAAGCTCTCGGTGTTCTCGGTGCCGGTGGCGCTGGTGGCGCTGATGGTGGTG-TTGGTCGGC-CCGTCGTTCGCGACGGCTGCGGCCGGCGAGGAGTACTAC-GCGGCGTCGCGCGCGC-G-CGGATGGGTGCGAGCCGGG-GCAGGGCGTGGTG-CCCA-AGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTG-C-GCGGTG-CGGCG-GCGGCGA-CCCGCCGGGGGT-TCGGGC-GCGGTG-CTGCCA-CCA-GCTG-AGGGAGG-TGGC-GGCGC-GCTG-CC-GCTGCGA-CGC-G-CTGC-GC-GCCATGGTGG-AGGTGCTCGTCG-AGGAGG-AGGAGGCGCCGCTGGCGTGCAAGA-AGGGGGCCATGGCC-GCCATCGC-CGAGGGGCTCCCCGGGCG-CGA-CGA-GTGCGACCTCGACACGCGC-GCCGACGACGGCGGATCGCGCCGTTGCCA-C-TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA-ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGG-CAATAAAGAG-CAGGTGATGAGTAGTATTTCATA--AAAAAAATGTTTGAAAAA] [+] EMBL AK107696 [ACTGCTCATCGATTTCTCTTCCTGACGGCGACAATGGCGTCGAAGAACAGCAAGCTCTCGGTGTCGTCGGTGGCGGTGGCGCTGGTGGCGCTGATGGTGGTG GTGGTCGGCGCCGTCG TCGCGACGGCTGCGGGCGGCGAGGAGTACTACGGCGGCGTCGCGCGCGCGG CGGATGGGTGCGAGCCGGG GCAGGGCGTGGTG CCCA AGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTG CGGCGGTG CGGCG GCGGCGA CCCGCCGGGGGT GCGGGC GCGGTG CTGCCA CCA GCTG AGGGAGG TGGC GGCGC GCTG CC GCTGCGA CGC G CTGC GC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCATGGCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATG ] [+] EMBL BI796687 [ TCTCTTCCTG CGGCGAC ATGGC TCGAAGAACA CAAGCTCTCGGTG TCTCGGTGC GTGGCCCT GTGGC CTGAT GT GTG TT GTC GC CCGTCGTCCGC GCT CGGC GCGAGGAGTACTAC GCGGCGTCGCGCGC C G CGGATGGGTGCGAGCCGGG GCAGGGCGTGGTG CCCA AGGACCCGCT CCGGGGTGCCGGGCGTACCTGCTG CGGCGGTT C GC GCGGCGA CCC CCGGGGGTGTCGGGC GCGGTG CTGCCA CCA GCTG AGGGAGG T GC GGCGC GCTG CC GCTGCGA CGC G CTGC GC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCATGGCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCC TTGTTATATTCTAGATTATTTATTTATC AACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAAaaaa ] [+] EMBL BI799652 [ TTCTCGGTGCCGGTGGCGCTGGTGGCGCTGATGTTGTTGTTTGTTCGGC CCGTCGTTCGCGCCGTCTGCGGCCGGCGAGGAGTACTAC GCGGCGTCGCGCGCGC GCCGGATGGGTGCGAGCCGGGCCCAGGGCGTGGTGCCCCA AGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTG C GCGGTG CGGCG GCGGCGA CCCGCCGGGGTT CCGGGC GCGGTG CTGCCA CCA GCTG AGGGAGG TGGC GGCGC GCTG CC GCTGCGA CGC G CTGC GC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCAT GCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATC AACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGG CAATAAAGAG CAGGTGATGAGTAGTATTTCATA AAAAA ] [+] EMBL BI797442 [ GGCGAGGAGTACTACGGCGGCGTCGCGCGC C G CGGATGGGTGCGAGCCGGG GCAGGGCGTGGTG CCCA AGGACCCGCTGCC GGGTGCCGGGCGTACCTGCTG C GGCGTG C GCG GCGGCGA CCCGCCGGGGG TCGGGC GCGGTG CTGCCA CCA GCTG AGGGAGG TGGC GGCGC GCTG CC GCTGCGA CGC GTCTGC GC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCAT GCC GCCATCGC CGAGGGGCTCCCCGGGCG CGACCGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCCAATAAAGAGCCAGGTGATGAGTAGTA AAA AAAAAA ] [+] EMBL BI796860 [ cGCGAGGAGTACTAC GC GCGTCGCGCGCGCGG CGGAT GGTGCGA CCGGG GCAGGGCGTGGTG CCCA AGGACCCGCTGCC GGGTGCCGGGCGTACCTGCT C GCGGT C GCG GCGGCGA CCCGCCGGGGGT GCGGGC CGGTT CTGCCA CCA GCTG AGGGAGG T GC GGCGC GCTG CC GCTGCGA CGC G CTGC GCTGCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCATGCCA GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA CATTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGG CAATAAAGAG CAGGTGATGAGTAGTATTTCATATTAAAAAAA ] [+] EMBL BI795088 [ GGCTTCGCGCGCGC G CGGATGGGTGCGAGCCGGG GCAGGGCGTGGTG CCCA AGGACCCGCT CCGGGGTTCCGGGCGTACCTTCTG C GCGGTGTCGGC GCGGCGA CCCGCCGGGGGT GCGGGCAGCGGTG CTGCCA CCA GCTG AGGGAGG TGGCAGGCGC GCTG CCAGCTGCGA CGCAG CTGCAGC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCATGGCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGG CAATAAAGAG CCGGTGATGAGTAGTATTTCATATTTTTACCTTGTTTGAAAAA] [+] EMBL BI796361 [ CGC C G CGGATGGGTGCGA CC GG GCAGGGCGTGGTG CCCA AGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTG C GCGGTG C GC GCGGCGA CCC CCGGGG TCGGGC GCGGTG CTGCCA CCA GCTG AGGGAGG T GC GGCGC GCTG CC GCTGCGA CGC GTCTGC GC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA A GGGGCCAT GCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGC CCGTTGCCACC TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGAT GG CAATAAAGA CAGGTGATGAGTAGTAaaaa ] [+] EMBL BI797704 [ G CCCATAGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTGTCGGCGGTG CGGCGTGCGGCGATCCCGCCGGGGGTGTCGGGC TCGGTGTCTGCCATCCATGCTGTAGGGAGGTTGGC GGCGC GCTG CC GCTGCGA CGCAG CTGC GC GCCATGGTGGTAGGTGCTCGTCGTAGGAGGTAGGAGGCGCCGCTGGCGTGCAAGATAGGGGGCCATGGCCAGCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTCATGATAAATAATATATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGGATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCCAATAAAGAG CAGGTGATGAGTAGTATTTCCCA AAAAAAAaa ] [+] EMBL BI797608 [ gtgttC GGCGCTTCTGTCC GCTGCGATCGC G CTGC GCTGCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGTCCATGGCCTGCCATCGCTCGAGGGGCTCCCCGGGCGTCGA CGATGTGCGACCTCGACACGCGCTGCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGG CAATAAAGAG CAGGTGATGAGTAGTATTTCATA AAAA ] [+] EMBL AU101345 [ GCTG CC GCTGCGA CGC G CTGC GC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCATGGCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGG CAATAAAGAG CAGGTGATGAGTAGTATTTCAAA AAAAA ] [+] EMBL BI796593 [ CGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCATGGCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATC AACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAAaa ] consensusID : consensus_15235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 586 fasta sequence [AANTACCNNGNAANGGAANAAGNGGTTCNNCGGGGGNNCCNTTAGAAAAANNATCCCCGGGNAAAGATTGCAAGAGNTTNNNNGCGNGNGNATAGAANACCCGGNCANGNNNNNNCCCANGACCNAAGCCGGGGGCCNGGNANACCTAATACCGACGGNGCGGCGGCGGNGACCCCCCGGGGGGNGCGGGNGCGGTGCTGCCACCAGCNTGAGGGAGGTGGCGGCGCGCTNCCCGNTGNGACGCGCTGCGCGCCATGGTGGAGGTGCTCGTCGAGGAGGAGGAGGCCCCGCTGGCGTGCAAGAAGGGGNCCATGGCCGCCATCGCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACA-CGC--GCGCCGACGACGGC-GGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATC-GC-CATTGTTATATTCTAGATTATTTATTTATCA-AAC-GAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCAATAAAGAGCAGGTGATGAGTAGTAAAAAAAAAAAAA] [-] EMBL AA753509 [AANTACCNNGNAANGGAANAAGNGGTTCNNCGGGGGNNCCNTTAGAAAAANNATCCCCGGGNAAAGATTGCAAGAGNTTNNNNGCGNGNGNATAGAANACCCGGNCANGNNNNNNCCCANGACCNAAGCCGGGGGCCNGGNANACCTAATACCGACGGNGCGGCGGCGGNGACCCCCCGGGGGGNGCGGGNGCGGTGCTGCCACCAGCNTGAGGGAGGTGGCGGCGCGCTNCCCGNTGNGACGCGCTGCGCGCCATGGTGGAGGTGCTCGTCGAGGAGGAGGAGGCCCCGCTGGCGTGCAAGAAGGGGNCCATGGCCGCCATCGCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACA CGC GCGCCGACGACGGC GGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATC GC CATTGTTATATTCTAGATTATTTATTTATCA AAC GAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCAATAAAGAGCAGGTGATGAGTAGTAAAAAAAAAAAAA] [+] EMBL BI795082 [ CGAGTGCGACCTCGACACCGCCGGCCCCGACGACGGCAGGATCGC CCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATCAGCACATTGTTATATTCTAGATTATTTATTTATCACAACAGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCAATAAAGAGCAGGTGATGAGTAGTAAAAAAAAAA ] consensusID : consensus_15235#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 506 fasta sequence [TGATGGTGTGGTGGTCGGCCCGTCGTCGCGGCGGCTGCGGGCGGCGAGGAGTACTACGCGGCTCGCGCGCGCGCCGGATGGGTGCGAGCCGGGGCAGGGCGTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTGCGGCGGTGCGGCGGCGGCGACCCGCCGGGGGTGCGGGCGCGGTGCTGCCATCCAGCTGAGGGAGGTGGCGGCGCGCTGCCGCTGCGACGCGCTGCGCGCCATGGTGGAGGTGCTCGTCGAGGAGGAGGAGGCGCCGCTGGCGTGCAAGAAGGGGGCCATGGCCGCCATCGCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGCCGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAACGAATAAAATGATTATGGTCGCGTGCAAAAAAAAAA] [+] EMBL BI799680 [TGATGGTGTGGTGGTCGGCCCGTCGTCGCGGCGGCTGCGGGCGGCGAGGAGTACTACGCGGCTCGCGCGCGCGCCGGATGGGTGCGAGCCGGGGCAGGGCGTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTGCGGCGGTGCGGCGGCGGCGACCCGCCGGGGGTGCGGGCGCGGTGCTGCCATCCAGCTGAGGGAGGTGGCGGCGCGCTGCCGCTGCGACGCGCTGCGCGCCATGGTGGAGGTGCTCGTCGAGGAGGAGGAGGCGCCGCTGGCGTGCAAGAAGGGGGCCATGGCCGCCATCGCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGCCGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAACGAATAAAATGATTATGGTCGCGTGCAAAAAAAAAA] [+] EMBL BI797335 [ CCATCGCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGCCGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATCGCCATTGTTATATTCTAaaaaaaaa ] consensusID : consensus_15235#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [AGCTATGACCAATGAGTTACCGCCCAAGCTCTAATGACGACGTCACTATTAGGGAAAGCTGGTACAGCACTGCAAGGTACCAGTCCAGGAATTCACCAGGGTCAGACACCCACAGCGTCCGCGTCAGAGGAGGAGGAGGCAGCACAGCTGGCAGTGCAAGAAGGGGCCACATGGCACAGCCATCAGCACAGAGGGGCATCACACACAGGGCAGCAGACAGAGTGCAGACACATCAGACAACAGCAGCAGCACGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATCGCCCTTGTTATATTCTAGATTATTTATTTATCCAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGCCAATAAAGACAGGTGATGAGTAGTATTTCAATAAAAAAAAAA] [+] EMBL BI797331 [AGCTATGACCAATGAGTTACCGCCCAAGCTCTAATGACGACGTCACTATTAGGGAAAGCTGGTACAGCACTGCAAGGTACCAGTCCAGGAATTCACCAGGGTCAGACACCCACAGCGTCCGCGTCAGAGGAGGAGGAGGCAGCACAGCTGGCAGTGCAAGAAGGGGCCACATGGCACAGCCATCAGCACAGAGGGGCATCACACACAGGGCAGCAGACAGAGTGCAGACACATCAGACAACAGCAGCAGCACGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATCGCCCTTGTTATATTCTAGATTATTTATTTATCCAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGCCAATAAAGACAGGTGATGAGTAGTATTTCAATAAAAAAAAAA] consensusID : consensus_15235#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [GAACAGCAAGCTCTCGGTGTCGTCGGTGGCGGTGGCGCTGGTGGCGCTGATGGTGGTGGTGGTCGGCGCCGTCGTCGCGGCGGCTGCGGGCGGCGAGGAGTACTACGGCGGCGTCGCGCGCGCGGCGGATGGGTGCGAGCCGGGGCAGGGCGTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTGCGGCGGTGCGGCGGCGGCGACCCGCGGGGGGTGCGGGCGCGGTGCTTGCCACCAGCTTGAGGGAGGTGGCGGCGCGCTTGCCGTTGCGACGCGCTTGCGCGCCAATGGTTGGAGGTGCTTCGTCGAGGAGGAGGAGGCGCCGTTGGCGTTGCAAAGAAGGGGGCAATTGGCCGCATTTGCCCAAGGGGTTTCCCGGGCGCNACGAGTTCGACCTTGACAAGGGCGCCGACGACGGNGATTC] [+] EMBL OSC919 [GAACAGCAAGCTCTCGGTGTCGTCGGTGGCGGTGGCGCTGGTGGCGCTGATGGTGGTGGTGGTCGGCGCCGTCGTCGCGGCGGCTGCGGGCGGCGAGGAGTACTACGGCGGCGTCGCGCGCGCGGCGGATGGGTGCGAGCCGGGGCAGGGCGTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTGCGGCGGTGCGGCGGCGGCGACCCGCGGGGGGTGCGGGCGCGGTGCTTGCCACCAGCTTGAGGGAGGTGGCGGCGCGCTTGCCGTTGCGACGCGCTTGCGCGCCAATGGTTGGAGGTGCTTCGTCGAGGAGGAGGAGGCGCCGTTGGCGTTGCAAAGAAGGGGGCAATTGGCCGCATTTGCCCAAGGGGTTTCCCGGGCGCNACGAGTTCGACCTTGACAAGGGCGCCGACGACGGNGATTC] consensusID : consensus_15235#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [CAGGGCGTACACTGCTGCAGGCGGTGCGTGCGGCAGCGACCCGCCAGGGGGTTCTGGGCAGCAGGTGCTGCCACCAGCTGAGGGAGTTGCAGGCAGCTGCTGCCGCTGCGACGCGCTGCGCGCCATGGTGGAGGTGCTCGTCGAGGAGGAGGAGGCCCGCTGGCGTGCAAGAAGGGGCCATGCCGCCATCGCACGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGCCGACGACGGCGGATCGCCCCGTTCCCACTTGGTGATTAATTGATATCTGATCTGTTTAATGATAAATAATAATCCCCATTGTTATATTCTAGATTATTTATTTATCACCGAATAAAATCATTATGTTCCCGTCTATGCTTGTTCTTCCAAAA] [+] EMBL BI798488 [CAGGGCGTACACTGCTGCAGGCGGTGCGTGCGGCAGCGACCCGCCAGGGGGTTCTGGGCAGCAGGTGCTGCCACCAGCTGAGGGAGTTGCAGGCAGCTGCTGCCGCTGCGACGCGCTGCGCGCCATGGTGGAGGTGCTCGTCGAGGAGGAGGAGGCCCGCTGGCGTGCAAGAAGGGGCCATGCCGCCATCGCACGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGCCGACGACGGCGGATCGCCCCGTTCCCACTTGGTGATTAATTGATATCTGATCTGTTTAATGATAAATAATAATCCCCATTGTTATATTCTAGATTATTTATTTATCACCGAATAAAATCATTATGTTCCCGTCTATGCTTGTTCTTCCAAAA] consensusID : consensus_15235#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [TTGTTGGTCCCCCCTTCTCGCGCCGTCTGCGGCCGCGAGGTTTACTACGCGTTTTCGCGCGCCGCCGGATGGGTCCGACCGGCGACCAGGGCGTGGTCCCCAAGCACCCGCTCCCGGGTCCCGGGCGTACCTGCTCGCGTCGCGCGCGACCCCCGGGGTCGGGCCGGTCTCCCACCACTGAGGGAGTGCCGGCGCCTCCCGTTGCGACGCCTGCGCCCATGTTGGAGGTGCTCTTCGAGGAGGAGGAGGCCCCCTGGCGTCCAAGAAGGGGCCCATGCCCCTTTCCCGAGGGGTTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCCCCGACGACGCCGGTTCGCCCCGTTCCCACCTGGGGG] [+] EMBL BI800285 [TTGTTGGTCCCCCCTTCTCGCGCCGTCTGCGGCCGCGAGGTTTACTACGCGTTTTCGCGCGCCGCCGGATGGGTCCGACCGGCGACCAGGGCGTGGTCCCCAAGCACCCGCTCCCGGGTCCCGGGCGTACCTGCTCGCGTCGCGCGCGACCCCCGGGGTCGGGCCGGTCTCCCACCACTGAGGGAGTGCCGGCGCCTCCCGTTGCGACGCCTGCGCCCATGTTGGAGGTGCTCTTCGAGGAGGAGGAGGCCCCCTGGCGTCCAAGAAGGGGCCCATGCCCCTTTCCCGAGGGGTTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCCCCGACGACGCCGGTTCGCCCCGTTCCCACCTGGGGG] consensusID : consensus_15235#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [GGGCACAACTGGCACAGCACATCAGGCACGAGGGGCTCCACCACGAGGCGCGACGAGTGCAGACACATCGACACGCGCAGCACAGACAGACGGCAGGATCAGCAGCCAGTTGCCACTTGGTGATTAATTGATATCTTGATGCTGTTTAATGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCAATAAAGAGCAGGTGATGAGTAGTATTTCAAAAAAAAAATAAAAAAAAAAA] [+] EMBL BI795126 [GGGCACAACTGGCACAGCACATCAGGCACGAGGGGCTCCACCACGAGGCGCGACGAGTGCAGACACATCGACACGCGCAGCACAGACAGACGGCAGGATCAGCAGCCAGTTGCCACTTGGTGATTAATTGATATCTTGATGCTGTTTAATGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCAATAAAGAGCAGGTGATGAGTAGTATTTCAAAAAAAAAATAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15235#4 --------------------------------------------GAACAGCAAGCTCTCG 16 consensus_15235#6 ------------------------------------------------------------ consensus_15235#2 ------------------------------------------------------------ consensus_15235#0 ACTGCTCATCGATTTCTCTTCCTGACGGCGACAATGGCGTCGAAGAACAGCAAGCTCTCG 60 consensus_15235#5 ------------------------------------------------------------ consensus_15235#1 ------------------------------------------------------------ consensus_15235#3 ------------------------------------------------------AGCTAT 6 consensus_15235#7 ------------------------------------------------------------ consensus_15235#4 GTGTCGTCGGTGGCGGTGGCGCTGGTGGCGCTGATGGTGGTGGTGGTCGGCGCCGTCGTC 76 consensus_15235#6 ---------------------------------------TTGTTGGTC--CCCCCTTCTC 19 consensus_15235#2 -------------------------------TGATGGTG-TGGTGGTCGGC-CCGTCGTC 27 consensus_15235#0 GTGTTCTCGGTGCCGGTGGCGCTGGTGGCGCTGATGGTGGTGTTGGTCGGCCCGTCGTTC 120 consensus_15235#5 ------------------------------------------------------------ consensus_15235#1 -----------------------------AANTACCNNGNAANGGAANAAGNGGTTCNNC 31 consensus_15235#3 GACCAATGAGTTACCGCCCAAGCTCTAATGACGACGTCACTATTAGGGAAAGCTGGTACA 66 consensus_15235#7 ------------------------------------------------------------ consensus_15235#4 GCGGCGGCTGCGGGCGGCGAGGAGTACTACGGCGGCGTCGCGCGCGCGGCGGATGGGTGC 136 consensus_15235#6 GCGCCGTCTGCGGCCG-CGAGGTTTACTACG-CGTTTTCGCGCGC-CGCCGGATGGGTCC 76 consensus_15235#2 GCGGCGGCTGCGGGCGGCGAGGAGTACTACG-CGGC-TCGCGCGCGCGCCGGATGGGTGC 85 consensus_15235#0 GCGACGGCTGCGGCCGGCGAGGAGTACTACG-CGGCGTCGCGCGCGCG-CGGATGGGTGC 178 consensus_15235#5 ------------------------------------------------------------ consensus_15235#1 GGGGGNNCCNTTAGAA-AAANNATCCCCGGGNAAAGATTGCAAGAGNTTNNNNGCGNGNG 90 consensus_15235#3 GCACTGCAAGGTACCAGTCCAGGAATTCACCAGGGTCAGACACCCACAGCGTCCGCGTCA 126 consensus_15235#7 ------------------------------------------------------------ consensus_15235#4 GAGCCGGGGC----AGGGC--GTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTAC 190 consensus_15235#6 GACCGGCGACC---AGGGC--GTGGTCCCCAAGCACCCGCTCCCGGG-TCCCGGGCGTAC 130 consensus_15235#2 GAGCCGGGGC----AGGGC--GTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTAC 139 consensus_15235#0 GAGCCGGGGC----AGGGC--GTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTAC 232 consensus_15235#5 --------------------------------------------------CAGGGCGTAC 10 consensus_15235#1 NATAGAANACC---CGGNCANGNNNNNNCCCANGACCNAAGCCGGGG--GCCNGGNANAC 145 consensus_15235#3 GAGGAGGAGGAGGCAGCACAGCTGGCAGTGCAAGAAGGGGCCACATGGCACAGC-CATCA 185 consensus_15235#7 ------------------------------------GGGCACAACTGGCACAGCACATCA 24 * consensus_15235#4 -CTGCTGC-GGCGGTGCG-GCGGCGGCGACCCGC--GGGGGGTGCGGGC-GCGGTGCTTG 244 consensus_15235#6 -CTGCT--------CGCG-TCGCGCGCGACCCCC--GGGGT---CGGGC--CGGT--CTC 171 consensus_15235#2 -CTGCTGC-GGCGGTGCG-GCGGCGGCGACCCGC--CGGGGGTGCGGGC-GCGGTG-CTG 192 consensus_15235#0 -CTGCTGC-G-CGGTGCG-GCGGCGGCGACCCGC--CGGGGGTTCGGGC-GCGGTG-CTG 284 consensus_15235#5 ACTGCTGCAGGCGGTGCGTGCGGCAGCGACCCGCCAGGGGGTTCTGGGCAGCAGGTGCTG 70 consensus_15235#1 -CTAATACCGACGGNGCG-GCGGCGGNGACCCCCC-GGGGGGNGCGGGN-GCGGTG-CTG 200 consensus_15235#3 GCACAGAGGGGCATCACACACAG-GGCAGCAGACA----GAGTGCAGAC-ACATCAGACA 239 consensus_15235#7 GGCACGAGGGGCTCCAC-CACGA-GGCG--CGAC-----GAGTGCAGAC-ACATC-GACA 73 * * * * * * * consensus_15235#4 CCACCAGCTTGAGGGAGGTGGCGGC-GCGCTTGCC-GTTGCGACGCGCTTGCGCGCCAAT 302 consensus_15235#6 CCACCA--CTGAGGGAG-TGCCGGC-GC--CTCCC-GTTGCGACGCCT----GCGCCCAT 220 consensus_15235#2 CCATCCAGCTGAGGGAGGTGGCGGC-GCG-CTGCC-GCTGCGACGCGCT-GCGCGCCATG 248 consensus_15235#0 CCACCAG-CTGAGGGAGGTGGCGGC-GCG-CTGCC-GCTGCGACGCGCT-GCGCGCCATG 339 consensus_15235#5 CCACCAG-CTGAGGGAGTTGCAGGCAGCTGCTGCC-GCTGCGACGCGCT-GCGCGCCATG 127 consensus_15235#1 CCACCAGCNTGAGGGAGGTGGCGGC-GCGCTNCCC-GNTGNGACGCGCT-GCGCGCCATG 257 consensus_15235#3 ACAGCAGCAGCACGACGACGGC-GGATC-GCGCC--GTTGCCACTTGGTGATTAATTGAT 295 consensus_15235#7 CGCGCAGCA-CAGACAGACGGCAGGATCAGCAGCCAGTTGCCACTTGGTGATTAATTGAT 132 * * * * * * * * ** ** consensus_15235#4 GGTTGGAGGTGCTTCGTCGAGGAGGAGGAGGCGCCGTTGGCGTTGCAAAGAAGGGGGCAA 362 consensus_15235#6 G-TTGGAGGTGCTCT-TCGAGGAGGAGGAGGCCCC-CTGGCGT--CCAAGAAGGGGCCCA 275 consensus_15235#2 G--TGGAGGTGCTCG-TCGAGGAGGAGGAGGCGCCGCTGGCGT--GCAAGAAGGGGGCCA 303 consensus_15235#0 G--TGGAGGTGCTCG-TCGAGGAGGAGGAGGCGCCGCTGGCGT--GCAAGAAGGGGGCCA 394 consensus_15235#5 G--TGGAGGTGCTCG-TCGAGGAGGAGGAGGC-CCGCTGGCGT--GCAAGAAGGGG-CCA 180 consensus_15235#1 G--TGGAGGTGCTCG-TCGAGGAGGAGGAGGCCCCGCTGGCGT--GCAAGAAGGGGNCCA 312 consensus_15235#3 ATCT-GATGCTGTTTAATGATAAATAATAATCGCCCTTGTTATATTCTAGATTAT--TTA 352 consensus_15235#7 ATCTTGATGCTGTTTAATGATAAATAATAATCGCCATTGTTATATTCTAGATTAT--TTA 190 * ** * * ** * * * * ** ** * *** * consensus_15235#4 TTGGCCGCATTTGCCCAAGGGGTTTCCCGGGCGCNACGAGTTCGACCTTGACAAGGGCGC 422 consensus_15235#6 T--GCCCCTTT--CCCGAGGGGTTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCCC 331 consensus_15235#2 T-GGCCGCCATC-GCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGC 361 consensus_15235#0 T-GGCCGCCATC-GCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGC 452 consensus_15235#5 T--GCCGCCATCGCACGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGC 238 consensus_15235#1 T-GGCCGCCATC-GCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGC 370 consensus_15235#3 TTTATCCAACG-AATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTG 411 consensus_15235#7 TTTATCAAACGGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTG 250 * * * * * *** * * ** * * * consensus_15235#4 CGACGACGGNGATTC--------------------------------------------- 437 consensus_15235#6 CGACGACGCCGGTTCGCCCCGTTCCCACCTGGGGG------------------------- 366 consensus_15235#2 CGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAA 421 consensus_15235#0 CGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAA 512 consensus_15235#5 CGACGACGGCGGATCGCCCCGTTCCCACTTGGTGATTAATTGATATCTGAT-CTGTTTAA 297 consensus_15235#1 CGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAA 430 consensus_15235#3 TAATTATCATGTGATGGCCAATAAAGA-CAGGTGATGAGTAGTATTTCAATAAAAAAAAA 470 consensus_15235#7 TAATTATCATGTGATGGGCAATAAAGAGCAGGTGATGAGTAGTATTTCAAAAAAAAAATA 310 * * * consensus_15235#4 ------------------------------------------------------------ consensus_15235#6 ------------------------------------------------------------ consensus_15235#2 TGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAA-CGAATAAAAT 480 consensus_15235#0 TGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAAT 572 consensus_15235#5 TGATAAATAATAATCCCCATTGTTATATTCTAGATTATTTATTTATCAC-CGAATAAAAT 356 consensus_15235#1 TGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAAT 490 consensus_15235#3 A----------------------------------------------------------- 471 consensus_15235#7 AAAAAAAAAA-------------------------------------------------- 320 consensus_15235#4 ------------------------------------------------------------ consensus_15235#6 ------------------------------------------------------------ consensus_15235#2 GATTATGGTCGCGTGCAAAAAAAAAA---------------------------------- 506 consensus_15235#0 GATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCA 632 consensus_15235#5 CATTATGTTCCCGTCTATGCTTGTTCTTCCAAAA-------------------------- 390 consensus_15235#1 GATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCA 550 consensus_15235#3 ------------------------------------------------------------ consensus_15235#7 ------------------------------------------------------------ consensus_15235#4 ------------------------------------------------- consensus_15235#6 ------------------------------------------------- consensus_15235#2 ------------------------------------------------- consensus_15235#0 ATAAAGAGCAGGTGATGAGTAGTATTTCATAAAAAAAATGTTTGAAAAA 681 consensus_15235#5 ------------------------------------------------- consensus_15235#1 ATAAAGAGCAGGTGATGAGTAGTAAAAAAAAAAAAA------------- 586 consensus_15235#3 ------------------------------------------------- consensus_15235#7 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||