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Oryza sativa
cluster # 15241 cluster # 15241       Sequences # 20       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15241#0 length = 1164 sequences # 17  
consensus_15241#1 length = 655 sequences # 2  
consensus_15241#2 length = 331 sequences # 1  

consensusID : consensus_15241#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 1164
fasta sequence
                              [CNCTCATCTTCTCCTCCAAATTCCTCTTCCACATTTCCTCCTCCTCCTCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGAGCACCAGCTGCCTCGCCTCCGCCGCGGAGACCGACGCCGACAACCTCTGCCTCCGCCTCGGCCCGCCGGGAAGCAGCATCACCACCACCACCACCACCGGCGGCGCCGACCCGGCGGCGAAGAGGTCCCTCGGGGCGAAG-GGTCGCTGGAGAGCACGGACAGCATGGCCTCCGGCACCGGAACTTCCGCCGCCGGCGAC-GAGCACGACGACGACACCGCCGCACCGGCCAAGGCACAGGTGGTAGGATGGCCACCAGTGAGGGCATACCGGAGGAACACCTTCCATCAGGCCGCCGCCGCCGCCGCCGCAACCAAGAAGGGTGGTGATGAGAAACAGAAGCAGCAG-CAGCAGGGAGGAGGGCTGTATGTGAAGGTGAGCATGGATGGGGCACCATACCTGAGG-AAGGTTG-ATCTCAAGATGTGCAAGGGCTACAGGGAGCTGAGGGAGGCACTGGAT-CTCCTCTTCACCAAGTGCTTCTCTGCAACCGCCTCTGACGGATGCAGCGATGGCCAGTTCGCCATTGCCTACGAGGACAAGGACGGTGACCT-CATGCTTGTTGGAGATGTG-CCCTGGGAAATGTTCATCTCTTCCTGCAAGAAGTTGAGGATCATGAAGGGCTCTGAA-GCCAGGTGATGGTCTGATGGATGATCAAAGGAGACAAAT-CACAGGCTAGGACACACCACATGAGAAGATGGATGATGAAT-CAGAGATCATGAATCACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGCTTGTGCTCTTCGTTGCTGTACAGAGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTCTGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAAGGCTGGAAAATATGAAAAAAGGGAGAAATTTGACTTAAGCTTGGTCATTTCTCCACACCAAAGATTCCTTGTTTCTCTGTGTTCATATCATAAATACAGTACCAAGCCAGTATTTTGTCAAAAAAA]

[+] EMBL AK103483             [  CTCATCTTCTCCTCCAAATTCCTCTTCCACATTTCCTCCTCCTCCTCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGAGCACCAGCTGCCTCGCCTCCGCCGCGGAGACCGACGCCGACAACCTCTGCCTCCGCCTCGGCCCGCCGGGAAGCAGCATCACCACCACCACCACCACCGGCGGCGCCGACCCGGCGGCGAAGAGGTCCCTCGGGGCGAAGCGGTCGCTGGAGAGCACGGACAGCATGGCCTCCGGCACCGGAACTTCCGCCGCCGGCGAC GAGCACGACGACGACACCGCCGCACCGGCCAAGGCACAGGTGGTAGGATGGCCACCAGTGAGGGCATACCGGAGGAACACCTTCCATCAGGCCGCCGCCGCCGCCGCCGCAACCAAGAAGGGTGGTGATGAGAAACAGAAGCAGCAG CAGCAGGGAGGAGGGCTGTATGTGAAGGTGAGCATGGATGGGGCACCATACCTGAGG AAGGTTG ATCTCAAGATGTGCAAGGGCTACAGGGAGCTGAGGGAGGCACTGGAT CTCCTCTTCACCAAGTGCTTCTCTGCAACCGCCTCTGACGGATGCAGCGATGGCCAGTTCGCCATTGCCTACGAGGACAAGGACGGTGACCT CATGCTTGTTGGAGATGTG CCCTGGGAAATGTTCATCTCTTCCTGCAAGAAGTTGAGGATCATGAAGGGCTCTGAA GCCAGGTGATGGTCTGATGGATGATCAAAGGAGACAAAT CACAGGCTAGGACACACCACATGAGAAGATGGATGATGAAT CAGAGATCATGAATCACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGCTTGTGCTCTTCGTTGCTGTACAGAGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTCTGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAAGGCTGGAAAATATGAAAAAAGGGAGAAATTTGACCTAAGCTTGGTCATTTCTCCACACCAAAGATTCCTTGTTTCTCTGTGTTCATATCATAAATACAGTACCAAGCC                  ]
[+] EMBL C91738               [cntnCATCTTCTCCTCCAAATTCCTCTTCCACATTTCCTCCTCCTCCTCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGAGCACCAGCTGCCTCGCCTCCGCCGCGGAGACCGACGCCGACAACCTCTGCCTCCGNCTCGGCCCGCCGGGAAGCAGCATCACCACCACCACCACCACCGGCGGCG CGACCCGGCGGCGAAGAGGTCCCTCGGGGCGAAG GGTCGNTGGAGAGCACGGACAGCATGGCCTCCGGNACCGGAACTTCCGCCGCCGG GAC GAGNACGACGACGGCAACGCCGAACNGGCAAAGcan                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C72556               [              TCCAAATTCCTCTTCCACATTTCCTCCTCCTCCTCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGAGCACCAGCTGCCTCGCCTCCGCCGCGGAGACNGACGCCGACAGCCTCTGCCTCCGCCTCGGCNCGCCGGGAAGCAGCATCACCACCACCACCACCACCGGCGGCG CGACCCGGCGGCGAAGAGGTCCCTCGGGGCGAAG GGTCGCTGGAGAGCACGGACAGCATGGCCTCCGGCACCGGAACTTCCGCCGCCGG GACGGAGCACGACGACGACAACGCCGCACCGGCCAAGGCACAGGTGGTAGGATGGCCACCAGTGAGGGCATACCGGAGGAACAACTTTCATNAGGCCGCCGCCGCCGCCGCCG AANCAAGAAGGGTTGTTATNAG AACAGAAGAAGAAG  AGNAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA757354             [                      CCTCTTCCACATTTCCTCCTCCTCCTCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGAGCACCAGCTGCCTCGCCTCCGCCGCGGAGACCGACGCCGACAACCTCTGCCTCCGCCTCGGCCCGCCGGGAAGCAGCATCACCACCACCACCACCATCGGCGGCGCCGACCCGGCGGCGAAGAGGTCCCTCGGGGCGAAGCGGTCGCTGGAGAGCACGGACAGCATGGCCTCCGGCACCGGAAATTCCGCCGCCGGCGAC GAGCACGACGACGACACCGCCGCACCGGCCAAGGCACAGGTGGTAGGATGGCCACCAGTGAGGGCATACCGGAGGAACACCTTCCATCAG      GCCGCTGCCGCCGCAACCAAGAAGGGTGGTGATGAGAAACAGAAGCAGCAG CAGCAGGGAGGAGGGCTGTATGTGAAGGTGAGCATGGATGGGGCACCATACCTGAGG AAGGTTG ATCTCAAGATGTGCAAGGGCTACAGGGAGCTGAGGGAGGCACTGGAT CTCCTCTTCACCAAGTGCTTCTCTGNCACCGCCTCTGACGGATGCAGCGATGGCCAGTTCGCCATTGCCTACGAGGACCAGGACGGTGACCT CATGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU095117             [                       CTCTTCCACATTTCCTCCTCCTCCTCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGAGCACCAGCTGCCTCGCCTCCGCCGCGGAGACCGACGCCGACAACCTCTGCCTCCGCCTCGGCCCGCCGGGAAGCAGCATCACCACCACCACCACCACCGGCGGCG CGACCCGG GGCGAAGAGGTCCCTCGGGGCGAAN GGTCGCTGGAGAGCACGGACAGCATGGCCTCCGGCACCGGAACTTCCGCCGCCGGGAAC GAGCACGACGACGACACCGCCGCACCGGCCAAGGCACAGGTGGTAGGATGGCCACCAGTGAGGGCATACCGGA GAACACCTTCCATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSS2007A             [                       CTCTTCCACATTTCCTCCTCCTCCTCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGAGCACCAGCTGCCTCGCCTCCGCCGCGGAGACCGACGCCGACAACCTCTGCCTCCGCCTCGGCCCGCCGGGAAGCAGCATCACCACCACCACCACCACCGGCGGCGNNAACCCGG GGCGAAGAGGTCCCTCGGGGCGAAG GGTCGCTGGAGAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU181588             [                         CTTCCACATTTCCTCCTCCTCCTCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGAGCACCAGCTGCCTCGCCTCCGCCGCGGAGACCGACGCCGACAACCTCTGCCTCCGCCTCGGCCCGCCGGGAAGCAGCATCACCACCACCACCACCACCGGCGGCGCCGACCCGGCGGCGAAGAGGTCCCTCGGGGCGAAGCGGTCGCTGGAGAGCACGGACAGCATGGCCTCCGGCACCGGAACTTCCGCCGCCGGCGAC GAGCACGACGACGACACCGCCGCACCGGCCAAGGCACAGGTGGTAGGATGGCCACCAGTGAGGGCATACCGGAGGAACACCTTCCATCAGGCCGCCGCCGCCGCCGCCGCAACCAAGAAGGGTGGTGATGAGAAACAGAAGCAGCAG C                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSS2777A             [                           TCCACATTTCCTCCTCCTCCTCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGNGCACCAGCTGCCTCGCCTCCGCCGCGGAGACCGACGCCGACAACCTCTGCCTCCGCCTCGGCCCGCCGGGAAGCAGCATCACCACCACCACCACCACCGGCGGCGCCGACCCGGCGGCGAAGAGGTCCCTCGGGGCGAAG GGTCGCTGGAGAGCACGGACAGCATGGCCTCCGGCACCGGAACTTCCGCCGCCGGGGAC GAGCACGACGACGACAACGNCGCACCGGCCANGGTACAGGTGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU030688             [                                                                                                                                                                                                                                                                                                                                                                                                                                      GAAGGTTGGTGATGAGAAACAGAANCAGCAGCCAGCAGGGAGGAGGGCTGTATTTGAAGGTGAGCATGGATGGGGCACCATACCTGAGG AAGGTTG ATCTCAAGATGTGCAAGGGCTACAGGGAGCTNAGGGAGGCACTGGAT CTCCTCTTCACCAAGTGCTTCTCTGCAACCGCCTCTGACGGATGCAGCNATGGCCAGTTCGCCATTGCCTACGAGGACAAGGACGGTGACCT CATGCTTGTTGGAGATGTG CCCTGGGAAATGTTCATCTCTTCCTGCAAGAAGTTGAGGATCATGAAGGGCTCTGAA GCCAGGTGATGGTCTGATGGATGATCAAAGGAGACAAAT CACAGGCTAGGACACACCACATGAGAAGATGGATGATGAAT CAGAGATCATGAATCACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGCTTGTGCTCTTCGTTGCTGTACAGAGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTCTGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAAGGCTGGAAAATATGAAAAAAGGGAGAAATTTGACTTAAGCTTGGTCATTTCTCCACACCAAAaa                                                              ]
[+] EMBL AU094006             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGTGAAGGTGAGCATGGATGGGGCACCATACCTGAGGNAAGGTTGAATCTCAAGATGTGCAAGGGCTACAGGGAGCTGAGGGAGGCACTGGAT CTCCTCTTCACCAAGTGCTTCTCTGCAACCGCCTCTGACGNATGCAGCGATGGCCAGTTCGCCATTGCCTACGAGGACAAGGACGGTGACCT CATGCTTGTTGGAGATGTG CCCTGGGAAATGTTCATCTCTTCCTGCAAGAAGTTGAGGATCATGAAGGGCTCTGAA GCCAGGTNATGGTCTGATGGATGATCAAAGGAGACAAAT CACAGGCTAGGACACACCACATGAGAAGATGGATGATGAAT CAGAGATCATGAATCACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGCTTGTGCTCTTCGTTGCTGTACAGAGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTCTGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAAGGCTGGAAAATATGAAAAAAGGGAGAAATTTGACTTAAGCTTGGTCATTTCTCCACACCAAAaaa                                                             ]
[+] EMBL AU029609             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCTGAGGGANCCACTGGATCCTCCTCTTCACCAAGTGCTTCTCTGCAACCGCCTCTGACGGATGCAGCGATGNCCANTTCGCCATTGCCTACGAGGACAAGGACGNTGACCT CATGCTTGTTGGAGATGTN CCCTGGG AATGTTCATCTCTTCCTGCAAGAAGTTGAGGATCATGAAGGGCTCTGAA GCCAGGTGATGGTCTGATGGATGATC AAGGAGACAAATCCACAGGCTAGGACACACCACATGAGAAGATGGATGATGAATCCAGAGATCATGAATCACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGCTTGTGCTCTTCGTTGCTGTACAGAGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTCTGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAAGGCTGGAAAATATGAAAAAAGGGAGAAATTTGACTTAAGCTTGGTCATTTCTCCACACCAAAGAaaaaa                                                         ]
[+] EMBL BI804906             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AT CTCCTCTTCACCAAGTGCTTCTCTGCAACCGCCTCTGACGGAT CAGCGAT GCCAGTTCGCCATTGCCTACGAGGACAAGGACGGTGACCT CATGCTTGTTGGAGATGTGCCCCTGGGAAATGTTCATCTCTTCCTGCAAGAAGTTGAGGATCATGAAGGGCTCTGAA GCCAGGTGATGGTCTGATGGATGATCAAAGGAGACAAAT CACAGGCTAGGACACACCACATGAGAAGATGGATGATGAAT CAGAGATCATGAATCACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGCTTGTGCTCTTCGTTGCTGTACAGAGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTCTGAATCC AGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAAGGCTGGAAAATATGAAAAAAGGGAGAAATTTGACTTAAGCTTGGTCATTTCTCCACACCAAAaa                                                              ]
[+] EMBL OS1321720            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCACCAAGTGCTTCTCTGCAACCGCCTCTGACGGATGCAGCGATGGCCAGTTCGCCATTGCCTACGAGGACAAGGACGGTGACCT CATGCTTGTTGGAGATGTG CCCTGGGAAATGTTCATCTCTTCCTGCAAGAAGTTGAGGATCATGAAGGGCTCTGAA GCCAGGTGATGGTCTGATGGATGATCAAAGGNGACAAAT CACAGGCTAGGACACACCACATGNGAAGATGGATGATGAAT CAGAGATCATGAATCACATGGCATGAGn                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU097191             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGCAGCGATGGCCAGTTCGCCATTGCCTACGAGGACAAGGACGGTGACCTCCATGCTTGTTGGAGATGTG CCCTGGGAAATGTTCATCTCTTCCTGCAAGAAGTTGAGGATCATGAAGGGCTCTGAATGCCAGGTGATGGTCTGATGGATGATCAAAGGAGACAAAT CACAGGCTAGGACACACCACATGAGAAGATGGATGATGAAT CAGAGATCATGAATCACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGCTTGTGCTCTTCGTTGCTGTACAGAGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTCTGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAAGGCTGGAAAA                                                                                                                    ]
[+] EMBL BI809529             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTTCCTGCAAGAA TTGAGGATCATGAAGGGCTCTGAA GCCA GTGATGGTCTGATGGATGGTCAAAGGAGAC AAT CACAGGCTAGGACACACCACATGAGAAGATGGATGATGAAT CAGAGATCATGAATCACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGCTTGTGCTCTTCGTTGCTGTACAGAGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTCTGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAAGGCTGGAAAATATGAAAAAAGGGAGAAATTTGACTTAAGCTTGGTCATTTCTCCACACTAAAGATTCCTTGTTTCTCTGTGTTCATATCATAAATACAGTACCAAGCCAGTATTTTGTCAAAAAAA]
[+] EMBL CB679243             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ctctctttCCAGGNGATGGTCTGATGGATGATCAAAGGAGACAAAT CACAGGCTAGGACACACCACATGAGAAGATGGATGATGAAT CATAGATCATGAATCACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGCTTGTGCTCTTCGTTGCTGTACAGAGAGAGTGTAGGCACTGCCTTGTTTCAGTGTTTCTGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAAGGCTGGAAAATATGAAAAAAGGGAGAAATTTGACTTAAGCTTGGTCATT                                                                             ]
[+] EMBL CA765587             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTT AGTTTGAGTTTTGTACTGTATGAGCGAAGGCTGGAAAATATGAAAAAAGGGAG                                                                                                     ]


>consensus_15241#0 CNCTCATCTTCTCCTCCAAATTCCTCTTCCACATTTCCTCCTCCTCCTCTTCTTTCTCTC AAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGAGCACCAGCTGCCTCG CCTCCGCCGCGGAGACCGACGCCGACAACCTCTGCCTCCGCCTCGGCCCGCCGGGAAGCA GCATCACCACCACCACCACCACCGGCGGCGCCGACCCGGCGGCGAAGAGGTCCCTCGGGG CGAAGGGTCGCTGGAGAGCACGGACAGCATGGCCTCCGGCACCGGAACTTCCGCCGCCGG CGACGAGCACGACGACGACACCGCCGCACCGGCCAAGGCACAGGTGGTAGGATGGCCACC AGTGAGGGCATACCGGAGGAACACCTTCCATCAGGCCGCCGCCGCCGCCGCCGCAACCAA GAAGGGTGGTGATGAGAAACAGAAGCAGCAGCAGCAGGGAGGAGGGCTGTATGTGAAGGT GAGCATGGATGGGGCACCATACCTGAGGAAGGTTGATCTCAAGATGTGCAAGGGCTACAG GGAGCTGAGGGAGGCACTGGATCTCCTCTTCACCAAGTGCTTCTCTGCAACCGCCTCTGA CGGATGCAGCGATGGCCAGTTCGCCATTGCCTACGAGGACAAGGACGGTGACCTCATGCT TGTTGGAGATGTGCCCTGGGAAATGTTCATCTCTTCCTGCAAGAAGTTGAGGATCATGAA GGGCTCTGAAGCCAGGTGATGGTCTGATGGATGATCAAAGGAGACAAATCACAGGCTAGG ACACACCACATGAGAAGATGGATGATGAATCAGAGATCATGAATCACATGGCATGAGATG AATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGCTTGTGCTCTTCGTTG CTGTACAGAGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTCTGAATCCAAGAGGGACAA GATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTTCAGTTTGAGTT TTGTACTGTATGAGCGAAGGCTGGAAAATATGAAAAAAGGGAGAAATTTGACTTAAGCTT GGTCATTTCTCCACACCAAAGATTCCTTGTTTCTCTGTGTTCATATCATAAATACAGTAC CAAGCCAGTATTTTGTCAAAAAAA



consensusID : consensus_15241#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 655
fasta sequence
                              [GGACANGGACGGTACCTCATGCTTGTTGGAGATGTGCCCTGGGAGTAAGTGCCATCATCATCATCATCATCATCAGATATTCNGAATATTCAGATGNCATGTTATCAGTTTCTTCAGNTCTGTATCTAACTCTAGGTTGCTNTGTTTCTTTTNCAGAATGTTCATCTCTTCCTNCAAGAAGTTGAGGATCATGAAGGGCTCTGAAGCCAGGTGATGGTCTGATGGATGATCAAAGGAGACAAATCACAGGCTAGGACACACCACATGAGAAGATGGATGATGAATCAGAGATCATGAATCACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGCTTGTGCTCTTCGTTGCTGTACAGAGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTCTGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAANNCTGGAAAATATGAAAAAAGGGAGAAATTTGACTTAAGCTTGGTCATTTCTCCACACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA]

[+] EMBL AU029747             [GGACANGGACGGTACCTCATGCTTGTTGGAGATGTGCCCTGGGAGTAAGTGCCATCATCATCATCATCATCATCAGATATTCNGAATATTCAGATGNCATGTTATCAGTTTCTTCAGNTCTGTATCTAACTCTAGGTTGCTNTGTTTCTTTTNCAGAATGTTCATCTCTTCCTNCAAGAAGTTGAGGATCATGAAGGGCTCTGAAGCCAGGTGATGGTCTGATGGATGATCAAAGGAGACAAATCACAGGCTAGGACACACCACATGAGAAGATGGATGATGAATCAGAGATCATGAATCACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGCTTGTGCTCTTCGTTGCTGTACAGAGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTCTGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAANNCTGGAAAATATGAAAAAAGGGAGAAATTTGACTTAAGCTTGGTCATTTCTCCACACCAAAAAA                                                                             ]
[+] EMBL CF334993             [                                                                                                                                                                                                                                                                                                                                                                                                              TGCCTTGTTTCAGTGTTTCTGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAAGGCTGGAAAATATGAAAAAAGGGAGAAATTTGACTTAAGCTTGGTCATTTCTCCACACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA]


>consensus_15241#1 GGACANGGACGGTACCTCATGCTTGTTGGAGATGTGCCCTGGGAGTAAGTGCCATCATCA TCATCATCATCATCAGATATTCNGAATATTCAGATGNCATGTTATCAGTTTCTTCAGNTC TGTATCTAACTCTAGGTTGCTNTGTTTCTTTTNCAGAATGTTCATCTCTTCCTNCAAGAA GTTGAGGATCATGAAGGGCTCTGAAGCCAGGTGATGGTCTGATGGATGATCAAAGGAGAC AAATCACAGGCTAGGACACACCACATGAGAAGATGGATGATGAATCAGAGATCATGAATC ACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGC TTGTGCTCTTCGTTGCTGTACAGAGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTCTGA ATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTTCTT TTTTCAGTTTGAGTTTTGTACTGTATGAGCGAANNCTGGAAAATATGAAAAAAGGGAGAA ATTTGACTTAAGCTTGGTCATTTCTCCACACCAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA



consensusID : consensus_15241#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence
                              [TCCTCCTCCTCCTCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGAGCACCAGCTGCCTCGCCTCCGCCGCGGAGACCGACGCCGACAACCTCTGCCTCCGCCTCGGCCCGCCGGGAAGCAGCATCACCACCACCACCACCACCGGCGACGAGCACGACGACGACACCGCCGCACCGGCCAAGGCACAGGTGGTAGGATGGCCACCAGTNAGGGCATACCGGAGGAACACCTTCCATCANGCCGCCGCCGCCGCCGCCGCAACCAAGAAGGGTGGTGATGAGAAACAGAAGCAGCAGCAGCNGGGAA]

[+] EMBL AU166084             [TCCTCCTCCTCCTCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGAGCACCAGCTGCCTCGCCTCCGCCGCGGAGACCGACGCCGACAACCTCTGCCTCCGCCTCGGCCCGCCGGGAAGCAGCATCACCACCACCACCACCACCGGCGACGAGCACGACGACGACACCGCCGCACCGGCCAAGGCACAGGTGGTAGGATGGCCACCAGTNAGGGCATACCGGAGGAACACCTTCCATCANGCCGCCGCCGCCGCCGCCGCAACCAAGAAGGGTGGTGATGAGAAACAGAAGCAGCAGCAGCNGGGAA]


>consensus_15241#2 TCCTCCTCCTCCTCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCT TCTCTCAGGAGCACCAGCTGCCTCGCCTCCGCCGCGGAGACCGACGCCGACAACCTCTGC CTCCGCCTCGGCCCGCCGGGAAGCAGCATCACCACCACCACCACCACCGGCGACGAGCAC GACGACGACACCGCCGCACCGGCCAAGGCACAGGTGGTAGGATGGCCACCAGTNAGGGCA TACCGGAGGAACACCTTCCATCANGCCGCCGCCGCCGCCGCCGCAACCAAGAAGGGTGGT GATGAGAAACAGAAGCAGCAGCAGCNGGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15241#0      -------------CNCTCATCTTCTCCTCCAAATTCCTCTTCCACATTTCCTCCTCCTCC 47
consensus_15241#2      ------------------------------------------------TCCTCCTCCTCC 12
consensus_15241#1      GGACANGGACGGTACCTCATGCTTGTTGGAGATGTGCCCTGGGAGTAAGTGCCATCATCA 60
                                                                           * ** ** 

consensus_15241#0      TCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGAGC 107
consensus_15241#2      TCTTCTTTCTCTCAAGAAAATCAGTAGCTAGCCATGGCGTCTTCTTCTTCTCTCAGGAGC 72
consensus_15241#1      TCATCATCATCATCAGATATTCNGAATATTCAGATGNCATGTTATCAGTTTCTTCAGNTC 120
                       ** ** *  **   *** * ** * *  *    *** * * ** *   * ***   *  *

consensus_15241#0      ACCAGCTGCCTCGCCTCCGCCGCGGAGACCGACGCCGACAACCTCTGCCTCCGCCTCGGC 167
consensus_15241#2      ACCAGCTGCCTCGCCTCCGCCGCGGAGACCGACGCCGACAACCTCTGCCTCCGCCTCGGC 132
consensus_15241#1      TGTATCTAACT---CTAGGTTGCTNTGTTTCTTTTNCAGAATGTTCATCTCTTCCT--NC 175
                          * **  **   **  *  **   *          * **  *    ***  ***   *

consensus_15241#0      CCGCCGGGAAGCAGCATCACCACCACCACCACCACCGGCGGCGCCGACCCGGCGGCGAAG 227
consensus_15241#2      CCGCCGGGAAGCAGCATCACCACCACCACCACCACCGGCG-------------------- 172
consensus_15241#1      AAGAAGTTGAGGATCATGAAGGGCTCTGAAGCCAGGTGATGGTCTGATGGATGATCAAAG 235
                         *  *   ** * *** *    * *     ***   *                      

consensus_15241#0      AGGTCCCTCGGGGCGAAGGGTCGCTGGAGAGCACGGACAGCATGGCCTCCGGCACCGGAA 287
consensus_15241#2      ------------------------------------------------------------
consensus_15241#1      GAGACAAATCACAGGCTAGGACACACCACATGAGAAGATGGATGATGAATCAGAGATCAT 295
                                                                                   

consensus_15241#0      CTTCCGCCGCCGGCGACGAGCACGACGACGACACCGCCGCACCGGCCAAGGCACAGGTGG 347
consensus_15241#2      ---------------ACGAGCACGACGACGACACCGCCGCACCGGCCAAGGCACAGGTGG 217
consensus_15241#1      GAATCACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTG 355
                                      *   * * *    * * *  *  ***  ** * **         *

consensus_15241#0      TAGGATGGCCACCAGTGAGGGCATACCGGAGGAACACCTTCCATCAGGCCGCCGCCGCCG 407
consensus_15241#2      TAGGATGGCCACCAGTNAGGGCATACCGGAGGAACACCTTCCATCANGCCGCCGCCGCCG 277
consensus_15241#1      ATGGCTTGTGCTCTTCGTTGCTGTAC-AGAGAGAGTTTAGGCACTGCCTTGTT-TCAGTG 413
                         ** * *    *      *   ***  ***  *       **       *    *   *

consensus_15241#0      CCGCCGCAACCAAGAAGGGT--GGTG-ATGAGAAACAGAAGCAGCAGC--AGCAGGGAGG 462
consensus_15241#2      CCGCCGCAACCAAGAAGGGT--GGTG-ATGAGAAACAGAAGCAGCAGC--AGCNGGGAA- 331
consensus_15241#1      TTTCTGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTC 473
                          * * * ****** **    * ** ****       *   **      *    **   

consensus_15241#0      AGGGCTGTATGTGAAGGTGAGCATGGATGGGGCACCATACCTGAGGAAGGTTGATCTCAA 522
consensus_15241#2      ------------------------------------------------------------
consensus_15241#1      ATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAANNCTGGAAAATATGAAAAAA 533
                                                                                   

consensus_15241#0      GATGTGCAAGGGCTACAGGGAGCTGAGGGAGGCACTGGATCTCCTCTTCACCAAGTGCTT 582
consensus_15241#2      ------------------------------------------------------------
consensus_15241#1      GGGAGAAATTTGACTTAAGCTTGGTCATTTCTCCACACCAAAAAAAAAAAAAAAAAAAAA 593
                                                                                   

consensus_15241#0      CTCTGCAACCGCCTCTGACGGATGCAGCGATGGCCAGTTCGCCATTGCCTACGAGGACAA 642
consensus_15241#2      ------------------------------------------------------------
consensus_15241#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAA 653
                                                                                   

consensus_15241#0      GGACGGTGACCTCATGCTTGTTGGAGATGTGCCCTGGGAAATGTTCATCTCTTCCTGCAA 702
consensus_15241#2      ------------------------------------------------------------
consensus_15241#1      AA---------------------------------------------------------- 655
                                                                                   

consensus_15241#0      GAAGTTGAGGATCATGAAGGGCTCTGAAGCCAGGTGATGGTCTGATGGATGATCAAAGGA 762
consensus_15241#2      ------------------------------------------------------------
consensus_15241#1      ------------------------------------------------------------
                                                                                   

consensus_15241#0      GACAAATCACAGGCTAGGACACACCACATGAGAAGATGGATGATGAATCAGAGATCATGA 822
consensus_15241#2      ------------------------------------------------------------
consensus_15241#1      ------------------------------------------------------------
                                                                                   

consensus_15241#0      ATCACATGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGAT 882
consensus_15241#2      ------------------------------------------------------------
consensus_15241#1      ------------------------------------------------------------
                                                                                   

consensus_15241#0      GGCTTGTGCTCTTCGTTGCTGTACAGAGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTC 942
consensus_15241#2      ------------------------------------------------------------
consensus_15241#1      ------------------------------------------------------------
                                                                                   

consensus_15241#0      TGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTTAATTAGGCTCATTT 1002
consensus_15241#2      ------------------------------------------------------------
consensus_15241#1      ------------------------------------------------------------
                                                                                   

consensus_15241#0      CTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAAGGCTGGAAAATATGAAAAAAGGGA 1062
consensus_15241#2      ------------------------------------------------------------
consensus_15241#1      ------------------------------------------------------------
                                                                                   

consensus_15241#0      GAAATTTGACTTAAGCTTGGTCATTTCTCCACACCAAAGATTCCTTGTTTCTCTGTGTTC 1122
consensus_15241#2      ------------------------------------------------------------
consensus_15241#1      ------------------------------------------------------------
                                                                                   

consensus_15241#0      ATATCATAAATACAGTACCAAGCCAGTATTTTGTCAAAAAAA 1164
consensus_15241#2      ------------------------------------------
consensus_15241#1      ------------------------------------------
                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)