These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 925 fasta sequence [TAATCCTCGCACCCCCCAACACCTCTCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGC-TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC-TTCCA-TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG-AAGCTTCAAGATGTTCTTCCT-GGGATCATTAACCAATT-GGGTCCTGACAAC-ATGGA-GCA-CCTAAAGA-GGATTGCTGAAG-AGATGCAG-AAGCAGGTAGCTGCTGCAGGTGCCACTG-CCCAGGCAAAGGAAGAGAA-CGATGATGATGTT-CCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGATGTCCTTCACGTCTCAACTATCTACTAGTATCATTTATGTTTGGAGATATCCTGCAATGGTACAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTT] [+] EMBL AK060496 [TAATCCTCGCACCCCCCAACACCTCTCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGTCCTGACAAC ATGGA GCA CCTAAAGA GGATTGCTGAAG AGATGCAG AAGCAGGTAGCTGCTGCAGGTGCCACTG CCCAGGCAAAGGAAGAGAA CGATGATGATGTT CCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGATGTCCTTCACGTCTCAACTATCTACTAGTATCATTTATGTTTGGAGATATCCTGCAATGGTACAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTT] [+] EMBL AK102202 [ TCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGTCCTGACAAC ATGGA GCA CCTAAAGA GGATTGCTGAAG AGATGCAG AAGCAGGTAGCTGCTGCAGGTGCCACTG CCCAGGCAAAGGAAGAGAA CGATGATGATGTT CCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGGTGCCATGGGGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCAT ] [+] EMBL AU069642 [ CCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTNGCTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATNAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGNGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGT TTCCA TCGCCGCAAACACA ] [+] EMBL AK104157 [ CGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGTCCTGACAAC ATGGA GCA CCTAAAGA GGATTGCTGAAG AGATGCAG AAGCAGGTAGCTGCTGCAGGTGCCACTG CCCAGGCAAAGGAAGAGAA CGATGATGATGTT CCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGATGTCCTTCACGTCTCAACTATCTACTAGTATCATTTATGTTTGGAGATATCCTGCAATGGTACAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTT] [+] EMBL C74280 [ CCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACNGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGCTTTCCATTCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAGAAAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGT CTGACAAC ATGGA GNN CCT AAGA GGATTGC ] [+] EMBL OSC00201 [ nCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGNAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGGCGGANACACATGGGT ] [+] EMBL C97858 [ ctTCCCGGATCTCCTTCTTCGCNTCTCGTTGCCGGCC CGCNTTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGTCCTGACAAC ATGGA GCA CCTAAAGA GGATTGCTGAAG AGATGCAG AAGCAGGTAGCTGCTGCAGGTGCCACTG CCCAGGCAAAGGAAGAGAA CGATGATGATGTT CCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAA ] [+] EMBL OSC2411 [ TCTCGCTGCCGGCCGCGC TTCG CAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACC GCGGANAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGAC GGGACCACTGACGACAAGAGGCTGCAGAG ACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACATNGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCTGGGGATCATTAACCAATTNGGGTCCTGACAAC ATNGAGGCA CCTAAAGAGGGATTNCTGAAG AGATGCAG AAGCAGGTAGCTTCTTCA ] [+] EMBL OSC12831 [ CTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGTCCTGACAAC ATGGA GCA CCTAAAGA GGATTGCTGAAG AGATGCAG AAGCAGGTAGCT CTGCAGGTGCCACTG CCAGG AAAG ] [+] EMBL D42234 [ AAGACCGTCCACAAGA GCGACCACTGACGACAAGAGGCTGCAGAG ACCCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCAT CAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACAT GGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAA ] [+] EMBL AU069686 [ TGCAAGC TTCCA TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGTCCTGACAAC ATGGA GCA CCTAAAGA GGATTGCTGAAG AGATGCAG AAGCAGGTAGCTGCTGCAGGTGCCACTG CCCAGGCAAAGGAAGAGAA CGATGATGATGTT CCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACC ] [+] EMBL D42855 [ AACAATGGA GCACCCTAAA A AGATTGCTGAAGAAGATGCAGAAAGAAGGTAGCTGCTGCAGGTGCCACTGCCCCAGGCAAAGGAAGAGAACCGATGATGATGTTCCCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAG ] consensusID : consensus_15242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 689 fasta sequence [GGAAAAGGCNCCGTGCGCAGGAAGAANAAGGCCGTCCACAAGACGGGGACCCCTGACGCCAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGCTTCCATCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTTCTTCCTGGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCTGAAGAGATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAACGATGATGATGTTCCANAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCNCAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGANATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGATAAAAAAAAAAAAAAAAAA] [+] EMBL AU093191 [GGAAAAGGCNCCGTGCGCAGGAAGAANAAGGCCGTCCACAAGACGGGGACCCCTGACGCCAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGCTTCCATCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTTCTTCCTGGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCTGAAGAGATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAACGATGATGATGTTCCANAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCNCAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGANATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU183959 [ GCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGATAAAAA ] [+] EMBL AU182117 [ GCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGANATGCCATGGAGTCCTTTTTNCCTGGTTTTNATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGATAAAAA ] consensusID : consensus_15242#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [AAAGGATTGTTAAAAAAATGCAAAAGCGGGTAGTTGCTGCGGGTGCCCCCGCCCAGGAAAAGAAAAAGAAGGTTTATGTTGTTCCAGGGTTTGTTCCGGGAAAGATTTTGGAAAAGGTGGCTCAGGAGACAAAAGCCTGTTCATAAAACCCCCAAGTAGTGAAATGTTACTTGCCCGGTGTTTTGAGGTCAGGGTTTTTTATGAGGGCCCTGTTTTGTTTTTCCTGGTGGGCCATTTTTGGTATTTGCATTTGGAAATTTTTAGTTTTTCCGAGTTTTTCCATAAGTTATAAATGTTGAGATCCCATGGAGTCCTTTTTACCGGGTTTTGATGTTCCCATTTTGGGTTGGTTCAGAATATAGTAGCATCAGGGTTTTCAAATGTCCTTCAGGTTTCAATTATTTATTAGTATCATTTATGTTGGGAAAAATCCCGCAATGGCCCAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTTTAACCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF335036 [AAAGGATTGTTAAAAAAATGCAAAAGCGGGTAGTTGCTGCGGGTGCCCCCGCCCAGGAAAAGAAAAAGAAGGTTTATGTTGTTCCAGGGTTTGTTCCGGGAAAGATTTTGGAAAAGGTGGCTCAGGAGACAAAAGCCTGTTCATAAAACCCCCAAGTAGTGAAATGTTACTTGCCCGGTGTTTTGAGGTCAGGGTTTTTTATGAGGGCCCTGTTTTGTTTTTCCTGGTGGGCCATTTTTGGTATTTGCATTTGGAAATTTTTAGTTTTTCCGAGTTTTTCCATAAGTTATAAATGTTGAGATCCCATGGAGTCCTTTTTACCGGGTTTTGATGTTCCCATTTTGGGTTGGTTCAGAATATAGTAGCATCAGGGTTTTCAAATGTCCTTCAGGTTTCAATTATTTATTAGTATCATTTATGTTGGGAAAAATCCCGCAATGGCCCAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTTTAACCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15242#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [GCACCCCCCAACACCTCTCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGCTTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGTGGGTAAATCGCCTTTGTCGCGAAATGAAATGAATGTCTTGTTCTTTGCTTCTCGCCGTGTCGCGAAATGAAACAAATGTGCTTCATTTTGTTTGTTAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGCTTCCATCGC] [+] EMBL CF335035 [GCACCCCCCAACACCTCTCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGCTTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGTGGGTAAATCGCCTTTGTCGCGAAATGAAATGAATGTCTTGTTCTTTGCTTCTCGCCGTGTCGCGAAATGAAACAAATGTGCTTCATTTTGTTTGTTAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGCTTCCATCGC] consensusID : consensus_15242#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [TGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTTCTTCCTGGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCTGAAGAGATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAACGATGATGATGTTCCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCNCAAGTAGTGAAATGTTACTTGACCGCTGTTNTGAGGTCATGGTTTTNTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTAAAAAAAAAAAA] [+] EMBL AU182155 [TGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTTCTTCCTGGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCTGAAGAGATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAACGATGATGATGTTCCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCNCAAGTAGTGAAATGTTACTTGACCGCTGTTNTGAGGTCATGGTTTTNTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTAAAAAAAAAAAA] consensusID : consensus_15242#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [ACACCTCTCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGCTTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTTGCAAGTTTNCATCGNNTTTGGTTTCNGTTTTCCAGTTTGTTTTGATCCNTGGNTTTTCNGGTTTGGNAATTTTGGGG] [+] EMBL OS0908A [ACACCTCTCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGCTTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTTGCAAGTTTNCATCGNNTTTGGTTTCNGTTTTCCAGTTTGTTTTGATCCNTGGNTTTTCNGGTTTGGNAATTTTGGGG] consensusID : consensus_15242#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [CGTCTGCNCCNNCGACGCNGTCNTGCCTNNTTNCCCATCTCCCTCCTCGNCTCTCGCTGCCGGCCGCGCTTCGCCAAGATGAACAAGGAGAGGCTTATNAAGATGGCCGNCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGANCACGCTCAAGNGAGTAGGTGTCAAC] [+] EMBL AU063678 [CGTCTGCNCCNNCGACGCNGTCNTGCCTNNTTNCCCATCTCCCTCCTCGNCTCTCGCTGCCGGCCGCGCTTCGCCAAGATGAACAAGGAGAGGCTTATNAAGATGGCCGNCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGANCACGCTCAAGNGAGTAGGTGTCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15242#3 ------------------------------------------------------------ consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 ------------------------------------------------------------ consensus_15242#0 ------------------------------------------------------------ consensus_15242#1 GGAAAAGGCNCCGTGCGCAGGAAGAANAAGGCCGTCCACAAGACGGGGACCCCTGACGCC 60 consensus_15242#4 ------------------------------------------------------------ consensus_15242#2 ------------------------------------------------------------ consensus_15242#3 ------------------------------------------------------------ consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 ------------------------------------------------------------ consensus_15242#0 ------------------------------------------------------------ consensus_15242#1 AAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAG 120 consensus_15242#4 ------------------------------------------------------------ consensus_15242#2 ------------------------------------------------------------ consensus_15242#3 ------------------------------------------------------------ consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 ------------------------------------------------------------ consensus_15242#0 ------------------------------------------------------------ consensus_15242#1 GTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGCTTCC 180 consensus_15242#4 ------------------------------------------------------------ consensus_15242#2 ------------------------------------------------------------ consensus_15242#3 ------------------------------------------------------------ consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 ------------------------------------------------------------ consensus_15242#0 ------------------------------------------------------------ consensus_15242#1 ATCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTT 240 consensus_15242#4 ---------------TGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTT 45 consensus_15242#2 ------------------------------------------------------------ consensus_15242#3 ----------------------------------------GCACCCCCCAACACCTCTCT 20 consensus_15242#6 ----------------------------------------------------------CG 2 consensus_15242#5 --------------------------------------------------ACACCTCTCT 10 consensus_15242#0 --------------------------------TAATCCTCGCACCCCCCAACACCTCTCT 28 consensus_15242#1 CTTCCTGGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCT 300 consensus_15242#4 CTTCCTGGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCT 105 consensus_15242#2 -------------------------------------------------AAAGGATTGTT 11 consensus_15242#3 TCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCC 80 consensus_15242#6 TCTGCNCCNNCGACGCNGTCNTGCCTNNTTNCC-CATCTCCCTCCTCGNCTCTCGCTGCC 61 consensus_15242#5 TCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCC 70 consensus_15242#0 TCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCC 88 consensus_15242#1 GAAGAGATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAAC 360 consensus_15242#4 GAAGAGATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAAC 165 consensus_15242#2 AAAAAAATGCAAAAGCGGGTAGTTGCTGCGGGTGCCCCCGCCCAGGAAAAGAAAAAGAAG 71 ** * * * ** consensus_15242#3 GGCCGCGCTTCGCCAAGA--TGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCG 138 consensus_15242#6 GGCCGCGCTTCGCCAAGA--TGAACAAGGAGAGGCTTATNAAGATGGCCGNCGCCGTCCG 119 consensus_15242#5 GGCCGCGCTTCGCCAAGA--TGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCG 128 consensus_15242#0 GGCCGCGCTTCGCCAAGA--TGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCG 146 consensus_15242#1 GATGATGATGTTCCANAGCTTGTTCCGGGAGAGAATTTCGAAGAGG--TAGCTCAGGAGA 418 consensus_15242#4 GATGATGATGTTCCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGG--TAGCTCAGGAGA 223 consensus_15242#2 GTTTATGTTGTTCCAGGGTTTGTTCCGGGAAAGATTTTGGAAAAGG--TGGCTCAGGAGA 129 * * * *** ** * *** ** ** ** * * * * * consensus_15242#3 CACCGGCGGG---AAAGGCACCGTGCGCAGGTGGGTAAATCGCCTTTGTCGCGAAATGAA 195 consensus_15242#6 CACCGGCGGG---AAAGGCACCGTGCGCAGG----------------------------- 147 consensus_15242#5 CACCGGCGGG---AAAGGCACCGTGCGCAGG----------------------------- 156 consensus_15242#0 CACCGGCGGG---AAAGGCACCGTGCGCAGG----------------------------- 174 consensus_15242#1 CAAAAGCCTGATCATAGATACCNCAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGT 478 consensus_15242#4 CAAAAGCCTGATCATAGATACCNCAAGTAGTGAAATGTTACTTGACCGCTGTTNTGAGGT 283 consensus_15242#2 CAAAAGCCTGTTCATAAAACCCCCAAGTAGTGAAATGTTACTTGCCCGGTGTTTTGAGGT 189 ** ** * * * ** * ** consensus_15242#3 ATGAATGTCTTGTTCTTTGCTTCTCGCCGTGTCGCGAAATGAAACAAATGTGCTTCATTT 255 consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 ------------------------------------------------------------ consensus_15242#0 ------------------------------------------------------------ consensus_15242#1 CATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGC-----CAATCTTTGTAT 533 consensus_15242#4 CATGGTTTTNTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGC-----CAATCTTTGTAT 338 consensus_15242#2 CAGGGTTTTTTATGAGGGCCCTGTTTTGTTTTTCCTGGTGGGC-----CATTTTTGGTAT 244 consensus_15242#3 TGTTTGTTAGGAAGAAGAAGGCCGTCCACAAG---ACGGGGACCACTGACGACAAGAGGC 312 consensus_15242#6 -----------AAGAAGAAGGCCGTCCACAAG---ACGGGGACCACTGACGACAAGAGGC 193 consensus_15242#5 -----------AAGAAGAAGGCCGTCCACAAG---ACGGGGACCACTGACGACAAGAGGC 202 consensus_15242#0 -----------AAGAAGAAGGCCGTCCACAAG---ACGGGGACCACTGACGACAAGAGGC 220 consensus_15242#1 TTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGANATGC 593 consensus_15242#4 TTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGC 398 consensus_15242#2 TTGCATTTGGAAATTTTTAGTTTTTCCGAGTTTTTCCATAAGTTATAAATGTTGAGATCC 304 ** ** *** * * * * * * * consensus_15242#3 TGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACA 372 consensus_15242#6 TGCAGANCACGCTCAAGNGAGTAGGTGTCAAC---------------------------- 225 consensus_15242#5 TGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACA 262 consensus_15242#0 TGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACA 280 consensus_15242#1 CATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTA 653 consensus_15242#4 CATGGAGTCCTTTTTAAAAAAAAAAAA--------------------------------- 425 consensus_15242#2 CATGGAGTCCTTTTTACCGGGTTTTGATGTTCCCATTTTGGGTTGGTTCAGAATATAGTA 364 ** * * * consensus_15242#3 TCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGT-GCAAGCTTCCATCGC- 430 consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 TCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTTGCAAGTTTNCATCGNN 322 consensus_15242#0 TCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGT-GCAAGCTTCCATCGCC 339 consensus_15242#1 GCATCAGGGTTTGCAGATAAAAAAAAAAAAAAAAAA------------------------ 689 consensus_15242#4 ------------------------------------------------------------ consensus_15242#2 GCATCAGGGTTTTCAAATGTCCTTCAGGTTTCAATTATTTATTAGTATCATTTATGTTGG 424 consensus_15242#3 ------------------------------------------------------------ consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 TTTGGTTTCNGTTTTCCAGTTTGTTTTGATCCNTGGNTTTTCNGGTTTGGNAATTTTGGG 382 consensus_15242#0 GCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTTCTTCCT 399 consensus_15242#1 ------------------------------------------------------------ consensus_15242#4 ------------------------------------------------------------ consensus_15242#2 GAAAAATCCCGCAATGGCCCAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTTT 484 consensus_15242#3 ------------------------------------------------------------ consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 G----------------------------------------------------------- 383 consensus_15242#0 GGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCTGAAGAG 459 consensus_15242#1 ------------------------------------------------------------ consensus_15242#4 ------------------------------------------------------------ consensus_15242#2 AACCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 530 consensus_15242#3 ------------------------------------------------------------ consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 ------------------------------------------------------------ consensus_15242#0 ATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAACGATGAT 519 consensus_15242#1 ------------------------------------------------------------ consensus_15242#4 ------------------------------------------------------------ consensus_15242#2 ------------------------------------------------------------ consensus_15242#3 ------------------------------------------------------------ consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 ------------------------------------------------------------ consensus_15242#0 GATGTTCCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCC 579 consensus_15242#1 ------------------------------------------------------------ consensus_15242#4 ------------------------------------------------------------ consensus_15242#2 ------------------------------------------------------------ consensus_15242#3 ------------------------------------------------------------ consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 ------------------------------------------------------------ consensus_15242#0 TGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTT 639 consensus_15242#1 ------------------------------------------------------------ consensus_15242#4 ------------------------------------------------------------ consensus_15242#2 ------------------------------------------------------------ consensus_15242#3 ------------------------------------------------------------ consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 ------------------------------------------------------------ consensus_15242#0 TCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAA 699 consensus_15242#1 ------------------------------------------------------------ consensus_15242#4 ------------------------------------------------------------ consensus_15242#2 ------------------------------------------------------------ consensus_15242#3 ------------------------------------------------------------ consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 ------------------------------------------------------------ consensus_15242#0 CTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTT 759 consensus_15242#1 ------------------------------------------------------------ consensus_15242#4 ------------------------------------------------------------ consensus_15242#2 ------------------------------------------------------------ consensus_15242#3 ------------------------------------------------------------ consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 ------------------------------------------------------------ consensus_15242#0 TTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTG 819 consensus_15242#1 ------------------------------------------------------------ consensus_15242#4 ------------------------------------------------------------ consensus_15242#2 ------------------------------------------------------------ consensus_15242#3 ------------------------------------------------------------ consensus_15242#6 ------------------------------------------------------------ consensus_15242#5 ------------------------------------------------------------ consensus_15242#0 CAGATGTCCTTCACGTCTCAACTATCTACTAGTATCATTTATGTTTGGAGATATCCTGCA 879 consensus_15242#1 ------------------------------------------------------------ consensus_15242#4 ------------------------------------------------------------ consensus_15242#2 ------------------------------------------------------------ consensus_15242#3 ---------------------------------------------- consensus_15242#6 ---------------------------------------------- consensus_15242#5 ---------------------------------------------- consensus_15242#0 ATGGTACAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTT 925 consensus_15242#1 ---------------------------------------------- consensus_15242#4 ---------------------------------------------- consensus_15242#2 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||