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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 925 fasta sequence
[TAATCCTCGCACCCCCCAACACCTCTCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGC-TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC-TTCCA-TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG-AAGCTTCAAGATGTTCTTCCT-GGGATCATTAACCAATT-GGGTCCTGACAAC-ATGGA-GCA-CCTAAAGA-GGATTGCTGAAG-AGATGCAG-AAGCAGGTAGCTGCTGCAGGTGCCACTG-CCCAGGCAAAGGAAGAGAA-CGATGATGATGTT-CCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGATGTCCTTCACGTCTCAACTATCTACTAGTATCATTTATGTTTGGAGATATCCTGCAATGGTACAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTT]
[+] EMBL AK060496 [TAATCCTCGCACCCCCCAACACCTCTCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGTCCTGACAAC ATGGA GCA CCTAAAGA GGATTGCTGAAG AGATGCAG AAGCAGGTAGCTGCTGCAGGTGCCACTG CCCAGGCAAAGGAAGAGAA CGATGATGATGTT CCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGATGTCCTTCACGTCTCAACTATCTACTAGTATCATTTATGTTTGGAGATATCCTGCAATGGTACAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTT]
[+] EMBL AK102202 [ TCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGTCCTGACAAC ATGGA GCA CCTAAAGA GGATTGCTGAAG AGATGCAG AAGCAGGTAGCTGCTGCAGGTGCCACTG CCCAGGCAAAGGAAGAGAA CGATGATGATGTT CCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGGTGCCATGGGGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCAT ]
[+] EMBL AU069642 [ CCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTNGCTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATNAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGNGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGT TTCCA TCGCCGCAAACACA ]
[+] EMBL AK104157 [ CGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGTCCTGACAAC ATGGA GCA CCTAAAGA GGATTGCTGAAG AGATGCAG AAGCAGGTAGCTGCTGCAGGTGCCACTG CCCAGGCAAAGGAAGAGAA CGATGATGATGTT CCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGATGTCCTTCACGTCTCAACTATCTACTAGTATCATTTATGTTTGGAGATATCCTGCAATGGTACAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTT]
[+] EMBL C74280 [ CCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACNGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGCTTTCCATTCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAGAAAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGT CTGACAAC ATGGA GNN CCT AAGA GGATTGC ]
[+] EMBL OSC00201 [ nCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGNAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGGCGGANACACATGGGT ]
[+] EMBL C97858 [ ctTCCCGGATCTCCTTCTTCGCNTCTCGTTGCCGGCC CGCNTTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGTCCTGACAAC ATGGA GCA CCTAAAGA GGATTGCTGAAG AGATGCAG AAGCAGGTAGCTGCTGCAGGTGCCACTG CCCAGGCAAAGGAAGAGAA CGATGATGATGTT CCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAA ]
[+] EMBL OSC2411 [ TCTCGCTGCCGGCCGCGC TTCG CAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACC GCGGANAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGAC GGGACCACTGACGACAAGAGGCTGCAGAG ACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACATNGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCTGGGGATCATTAACCAATTNGGGTCCTGACAAC ATNGAGGCA CCTAAAGAGGGATTNCTGAAG AGATGCAG AAGCAGGTAGCTTCTTCA ]
[+] EMBL OSC12831 [ CTGCCGGCCGCGC TTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGTCCTGACAAC ATGGA GCA CCTAAAGA GGATTGCTGAAG AGATGCAG AAGCAGGTAGCT CTGCAGGTGCCACTG CCAGG AAAG ]
[+] EMBL D42234 [ AAGACCGTCCACAAGA GCGACCACTGACGACAAGAGGCTGCAGAG ACCCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCAT CAGTTCGTCAATCCCAAAGTGCAAGC TTCCA TCGCCGCAAACACAT GGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAA ]
[+] EMBL AU069686 [ TGCAAGC TTCCA TCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAG AAGCTTCAAGATGTTCTTCCT GGGATCATTAACCAATT GGGTCCTGACAAC ATGGA GCA CCTAAAGA GGATTGCTGAAG AGATGCAG AAGCAGGTAGCTGCTGCAGGTGCCACTG CCCAGGCAAAGGAAGAGAA CGATGATGATGTT CCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACC ]
[+] EMBL D42855 [ AACAATGGA GCACCCTAAA A AGATTGCTGAAGAAGATGCAGAAAGAAGGTAGCTGCTGCAGGTGCCACTGCCCCAGGCAAAGGAAGAGAACCGATGATGATGTTCCCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAG ]
consensusID : consensus_15242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 689 fasta sequence
[GGAAAAGGCNCCGTGCGCAGGAAGAANAAGGCCGTCCACAAGACGGGGACCCCTGACGCCAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGCTTCCATCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTTCTTCCTGGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCTGAAGAGATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAACGATGATGATGTTCCANAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCNCAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGANATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGATAAAAAAAAAAAAAAAAAA]
[+] EMBL AU093191 [GGAAAAGGCNCCGTGCGCAGGAAGAANAAGGCCGTCCACAAGACGGGGACCCCTGACGCCAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGCTTCCATCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTTCTTCCTGGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCTGAAGAGATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAACGATGATGATGTTCCANAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCNCAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGANATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU183959 [ GCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGATAAAAA ]
[+] EMBL AU182117 [ GCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGANATGCCATGGAGTCCTTTTTNCCTGGTTTTNATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTGCAGATAAAAA ]
consensusID : consensus_15242#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[AAAGGATTGTTAAAAAAATGCAAAAGCGGGTAGTTGCTGCGGGTGCCCCCGCCCAGGAAAAGAAAAAGAAGGTTTATGTTGTTCCAGGGTTTGTTCCGGGAAAGATTTTGGAAAAGGTGGCTCAGGAGACAAAAGCCTGTTCATAAAACCCCCAAGTAGTGAAATGTTACTTGCCCGGTGTTTTGAGGTCAGGGTTTTTTATGAGGGCCCTGTTTTGTTTTTCCTGGTGGGCCATTTTTGGTATTTGCATTTGGAAATTTTTAGTTTTTCCGAGTTTTTCCATAAGTTATAAATGTTGAGATCCCATGGAGTCCTTTTTACCGGGTTTTGATGTTCCCATTTTGGGTTGGTTCAGAATATAGTAGCATCAGGGTTTTCAAATGTCCTTCAGGTTTCAATTATTTATTAGTATCATTTATGTTGGGAAAAATCCCGCAATGGCCCAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTTTAACCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF335036 [AAAGGATTGTTAAAAAAATGCAAAAGCGGGTAGTTGCTGCGGGTGCCCCCGCCCAGGAAAAGAAAAAGAAGGTTTATGTTGTTCCAGGGTTTGTTCCGGGAAAGATTTTGGAAAAGGTGGCTCAGGAGACAAAAGCCTGTTCATAAAACCCCCAAGTAGTGAAATGTTACTTGCCCGGTGTTTTGAGGTCAGGGTTTTTTATGAGGGCCCTGTTTTGTTTTTCCTGGTGGGCCATTTTTGGTATTTGCATTTGGAAATTTTTAGTTTTTCCGAGTTTTTCCATAAGTTATAAATGTTGAGATCCCATGGAGTCCTTTTTACCGGGTTTTGATGTTCCCATTTTGGGTTGGTTCAGAATATAGTAGCATCAGGGTTTTCAAATGTCCTTCAGGTTTCAATTATTTATTAGTATCATTTATGTTGGGAAAAATCCCGCAATGGCCCAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTTTAACCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15242#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence
[GCACCCCCCAACACCTCTCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGCTTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGTGGGTAAATCGCCTTTGTCGCGAAATGAAATGAATGTCTTGTTCTTTGCTTCTCGCCGTGTCGCGAAATGAAACAAATGTGCTTCATTTTGTTTGTTAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGCTTCCATCGC]
[+] EMBL CF335035 [GCACCCCCCAACACCTCTCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGCTTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGTGGGTAAATCGCCTTTGTCGCGAAATGAAATGAATGTCTTGTTCTTTGCTTCTCGCCGTGTCGCGAAATGAAACAAATGTGCTTCATTTTGTTTGTTAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGCTTCCATCGC]
consensusID : consensus_15242#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence
[TGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTTCTTCCTGGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCTGAAGAGATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAACGATGATGATGTTCCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCNCAAGTAGTGAAATGTTACTTGACCGCTGTTNTGAGGTCATGGTTTTNTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTAAAAAAAAAAAA]
[+] EMBL AU182155 [TGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTTCTTCCTGGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCTGAAGAGATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAACGATGATGATGTTCCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCCTGATCATAGATACCNCAAGTAGTGAAATGTTACTTGACCGCTGTTNTGAGGTCATGGTTTTNTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTTTTAAAAAAAAAAAA]
consensusID : consensus_15242#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence
[ACACCTCTCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGCTTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTTGCAAGTTTNCATCGNNTTTGGTTTCNGTTTTCCAGTTTGTTTTGATCCNTGGNTTTTCNGGTTTGGNAATTTTGGGG]
[+] EMBL OS0908A [ACACCTCTCTTCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCCGGCCGCGCTTCGCCAAGATGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTTGCAAGTTTNCATCGNNTTTGGTTTCNGTTTTCCAGTTTGTTTTGATCCNTGGNTTTTCNGGTTTGGNAATTTTGGGG]
consensusID : consensus_15242#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence
[CGTCTGCNCCNNCGACGCNGTCNTGCCTNNTTNCCCATCTCCCTCCTCGNCTCTCGCTGCCGGCCGCGCTTCGCCAAGATGAACAAGGAGAGGCTTATNAAGATGGCCGNCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGANCACGCTCAAGNGAGTAGGTGTCAAC]
[+] EMBL AU063678 [CGTCTGCNCCNNCGACGCNGTCNTGCCTNNTTNCCCATCTCCCTCCTCGNCTCTCGCTGCCGGCCGCGCTTCGCCAAGATGAACAAGGAGAGGCTTATNAAGATGGCCGNCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGANCACGCTCAAGNGAGTAGGTGTCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15242#3 ------------------------------------------------------------
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 ------------------------------------------------------------
consensus_15242#0 ------------------------------------------------------------
consensus_15242#1 GGAAAAGGCNCCGTGCGCAGGAAGAANAAGGCCGTCCACAAGACGGGGACCCCTGACGCC 60
consensus_15242#4 ------------------------------------------------------------
consensus_15242#2 ------------------------------------------------------------
consensus_15242#3 ------------------------------------------------------------
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 ------------------------------------------------------------
consensus_15242#0 ------------------------------------------------------------
consensus_15242#1 AAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAG 120
consensus_15242#4 ------------------------------------------------------------
consensus_15242#2 ------------------------------------------------------------
consensus_15242#3 ------------------------------------------------------------
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 ------------------------------------------------------------
consensus_15242#0 ------------------------------------------------------------
consensus_15242#1 GTCAACATCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTGCAAGCTTCC 180
consensus_15242#4 ------------------------------------------------------------
consensus_15242#2 ------------------------------------------------------------
consensus_15242#3 ------------------------------------------------------------
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 ------------------------------------------------------------
consensus_15242#0 ------------------------------------------------------------
consensus_15242#1 ATCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTT 240
consensus_15242#4 ---------------TGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTT 45
consensus_15242#2 ------------------------------------------------------------
consensus_15242#3 ----------------------------------------GCACCCCCCAACACCTCTCT 20
consensus_15242#6 ----------------------------------------------------------CG 2
consensus_15242#5 --------------------------------------------------ACACCTCTCT 10
consensus_15242#0 --------------------------------TAATCCTCGCACCCCCCAACACCTCTCT 28
consensus_15242#1 CTTCCTGGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCT 300
consensus_15242#4 CTTCCTGGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCT 105
consensus_15242#2 -------------------------------------------------AAAGGATTGTT 11
consensus_15242#3 TCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCC 80
consensus_15242#6 TCTGCNCCNNCGACGCNGTCNTGCCTNNTTNCC-CATCTCCCTCCTCGNCTCTCGCTGCC 61
consensus_15242#5 TCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCC 70
consensus_15242#0 TCTCCTGCGCCGCCGCCGCCTCCTCCTCCTCCCGCATCTCCCTCCTCGCCTCTCGCTGCC 88
consensus_15242#1 GAAGAGATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAAC 360
consensus_15242#4 GAAGAGATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAAC 165
consensus_15242#2 AAAAAAATGCAAAAGCGGGTAGTTGCTGCGGGTGCCCCCGCCCAGGAAAAGAAAAAGAAG 71
** * * * **
consensus_15242#3 GGCCGCGCTTCGCCAAGA--TGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCG 138
consensus_15242#6 GGCCGCGCTTCGCCAAGA--TGAACAAGGAGAGGCTTATNAAGATGGCCGNCGCCGTCCG 119
consensus_15242#5 GGCCGCGCTTCGCCAAGA--TGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCG 128
consensus_15242#0 GGCCGCGCTTCGCCAAGA--TGAACAAGGAGAGGCTTATGAAGATGGCCGGCGCCGTCCG 146
consensus_15242#1 GATGATGATGTTCCANAGCTTGTTCCGGGAGAGAATTTCGAAGAGG--TAGCTCAGGAGA 418
consensus_15242#4 GATGATGATGTTCCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGG--TAGCTCAGGAGA 223
consensus_15242#2 GTTTATGTTGTTCCAGGGTTTGTTCCGGGAAAGATTTTGGAAAAGG--TGGCTCAGGAGA 129
* * * *** ** * *** ** ** ** * * * * *
consensus_15242#3 CACCGGCGGG---AAAGGCACCGTGCGCAGGTGGGTAAATCGCCTTTGTCGCGAAATGAA 195
consensus_15242#6 CACCGGCGGG---AAAGGCACCGTGCGCAGG----------------------------- 147
consensus_15242#5 CACCGGCGGG---AAAGGCACCGTGCGCAGG----------------------------- 156
consensus_15242#0 CACCGGCGGG---AAAGGCACCGTGCGCAGG----------------------------- 174
consensus_15242#1 CAAAAGCCTGATCATAGATACCNCAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGT 478
consensus_15242#4 CAAAAGCCTGATCATAGATACCNCAAGTAGTGAAATGTTACTTGACCGCTGTTNTGAGGT 283
consensus_15242#2 CAAAAGCCTGTTCATAAAACCCCCAAGTAGTGAAATGTTACTTGCCCGGTGTTTTGAGGT 189
** ** * * * ** * **
consensus_15242#3 ATGAATGTCTTGTTCTTTGCTTCTCGCCGTGTCGCGAAATGAAACAAATGTGCTTCATTT 255
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 ------------------------------------------------------------
consensus_15242#0 ------------------------------------------------------------
consensus_15242#1 CATGGTTTTCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGC-----CAATCTTTGTAT 533
consensus_15242#4 CATGGTTTTNTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGC-----CAATCTTTGTAT 338
consensus_15242#2 CAGGGTTTTTTATGAGGGCCCTGTTTTGTTTTTCCTGGTGGGC-----CATTTTTGGTAT 244
consensus_15242#3 TGTTTGTTAGGAAGAAGAAGGCCGTCCACAAG---ACGGGGACCACTGACGACAAGAGGC 312
consensus_15242#6 -----------AAGAAGAAGGCCGTCCACAAG---ACGGGGACCACTGACGACAAGAGGC 193
consensus_15242#5 -----------AAGAAGAAGGCCGTCCACAAG---ACGGGGACCACTGACGACAAGAGGC 202
consensus_15242#0 -----------AAGAAGAAGGCCGTCCACAAG---ACGGGGACCACTGACGACAAGAGGC 220
consensus_15242#1 TTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGANATGC 593
consensus_15242#4 TTGCAATTGGAAACTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGC 398
consensus_15242#2 TTGCATTTGGAAATTTTTAGTTTTTCCGAGTTTTTCCATAAGTTATAAATGTTGAGATCC 304
** ** *** * * * * * * *
consensus_15242#3 TGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACA 372
consensus_15242#6 TGCAGANCACGCTCAAGNGAGTAGGTGTCAAC---------------------------- 225
consensus_15242#5 TGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACA 262
consensus_15242#0 TGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAGGTCAACA 280
consensus_15242#1 CATGGAGTCCTTTTTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTA 653
consensus_15242#4 CATGGAGTCCTTTTTAAAAAAAAAAAA--------------------------------- 425
consensus_15242#2 CATGGAGTCCTTTTTACCGGGTTTTGATGTTCCCATTTTGGGTTGGTTCAGAATATAGTA 364
** * * *
consensus_15242#3 TCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGT-GCAAGCTTCCATCGC- 430
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 TCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGTTGCAAGTTTNCATCGNN 322
consensus_15242#0 TCTTCAAGGATGATCTCGTCATCCAGTTCGTCAATCCCAAAGT-GCAAGCTTCCATCGCC 339
consensus_15242#1 GCATCAGGGTTTGCAGATAAAAAAAAAAAAAAAAAA------------------------ 689
consensus_15242#4 ------------------------------------------------------------
consensus_15242#2 GCATCAGGGTTTTCAAATGTCCTTCAGGTTTCAATTATTTATTAGTATCATTTATGTTGG 424
consensus_15242#3 ------------------------------------------------------------
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 TTTGGTTTCNGTTTTCCAGTTTGTTTTGATCCNTGGNTTTTCNGGTTTGGNAATTTTGGG 382
consensus_15242#0 GCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAGAAGCTTCAAGATGTTCTTCCT 399
consensus_15242#1 ------------------------------------------------------------
consensus_15242#4 ------------------------------------------------------------
consensus_15242#2 GAAAAATCCCGCAATGGCCCAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTTT 484
consensus_15242#3 ------------------------------------------------------------
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 G----------------------------------------------------------- 383
consensus_15242#0 GGGATCATTAACCAATTGGGTCCTGACAACATGGAGCACCTAAAGAGGATTGCTGAAGAG 459
consensus_15242#1 ------------------------------------------------------------
consensus_15242#4 ------------------------------------------------------------
consensus_15242#2 AACCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 530
consensus_15242#3 ------------------------------------------------------------
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 ------------------------------------------------------------
consensus_15242#0 ATGCAGAAGCAGGTAGCTGCTGCAGGTGCCACTGCCCAGGCAAAGGAAGAGAACGATGAT 519
consensus_15242#1 ------------------------------------------------------------
consensus_15242#4 ------------------------------------------------------------
consensus_15242#2 ------------------------------------------------------------
consensus_15242#3 ------------------------------------------------------------
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 ------------------------------------------------------------
consensus_15242#0 GATGTTCCAGAGCTTGTTCCGGGAGAGAATTTCGAAGAGGTAGCTCAGGAGACAAAAGCC 579
consensus_15242#1 ------------------------------------------------------------
consensus_15242#4 ------------------------------------------------------------
consensus_15242#2 ------------------------------------------------------------
consensus_15242#3 ------------------------------------------------------------
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 ------------------------------------------------------------
consensus_15242#0 TGATCATAGATACCACAAGTAGTGAAATGTTACTTGACCGCTGTTCTGAGGTCATGGTTT 639
consensus_15242#1 ------------------------------------------------------------
consensus_15242#4 ------------------------------------------------------------
consensus_15242#2 ------------------------------------------------------------
consensus_15242#3 ------------------------------------------------------------
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 ------------------------------------------------------------
consensus_15242#0 TCTATGACGGCCCTGTTTTGCTTCTCCTCGTAGGCCAATCTTTGTATTTGCAATTGGAAA 699
consensus_15242#1 ------------------------------------------------------------
consensus_15242#4 ------------------------------------------------------------
consensus_15242#2 ------------------------------------------------------------
consensus_15242#3 ------------------------------------------------------------
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 ------------------------------------------------------------
consensus_15242#0 CTTTTAGTTTCTCCGAGTTTTTACCTAAGTTATGAATGCTGAGATGCCATGGAGTCCTTT 759
consensus_15242#1 ------------------------------------------------------------
consensus_15242#4 ------------------------------------------------------------
consensus_15242#2 ------------------------------------------------------------
consensus_15242#3 ------------------------------------------------------------
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 ------------------------------------------------------------
consensus_15242#0 TTACCTGGTTTTGATGTTCACATTTCTGGTTGGTTCAGAATATACTAGCATCAGGGTTTG 819
consensus_15242#1 ------------------------------------------------------------
consensus_15242#4 ------------------------------------------------------------
consensus_15242#2 ------------------------------------------------------------
consensus_15242#3 ------------------------------------------------------------
consensus_15242#6 ------------------------------------------------------------
consensus_15242#5 ------------------------------------------------------------
consensus_15242#0 CAGATGTCCTTCACGTCTCAACTATCTACTAGTATCATTTATGTTTGGAGATATCCTGCA 879
consensus_15242#1 ------------------------------------------------------------
consensus_15242#4 ------------------------------------------------------------
consensus_15242#2 ------------------------------------------------------------
consensus_15242#3 ----------------------------------------------
consensus_15242#6 ----------------------------------------------
consensus_15242#5 ----------------------------------------------
consensus_15242#0 ATGGTACAGTGTTGATTTTTCCCCAAATGAAAAATAATGATGTGTT 925
consensus_15242#1 ----------------------------------------------
consensus_15242#4 ----------------------------------------------
consensus_15242#2 ----------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||