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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1078 fasta sequence
[ACTCACACGCGGAGACAAAAACACCTTCACAATTCGCGAAAGCTCAGCTGCTTCTGCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTGCGCCTCGCGGTCCCGACGGCGGCGCCGCCCGTGCTGCCGCCGCTGCGGCAGTCTGCGGTGCGGGCGGCGGGCTCCCCCGCCGCCGCCGCTCTGCGGACGGGCGCGCTCAGGGGATGCGCCTCGCTGCCGCTGAAGCCGCAGCCGCTGCTGGGGGCGGGACAGGCGGCGAGCGGTCGCCGGGGTGGCGCCGCCGTGTGCCACTCGTCGGCGCACCTGAGCGCGCGGACGATGCAATGGGTCTCCGCCGGGGCCACCGCAGTGCTATTGCTTGCTAAAGGCACAGCCATACACAAATCTTTCCTTGTGCCACTGTTTGCTTTGCTAGCACCTTGCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCATT-GGACTGC-TTTTCTT-GCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA-GTTGATGAATCTGAGGGGAACTC-AAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGGTATCTC-GCTTTTCAGCACTTCA-CCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT-CAGGGATC-AATAA-TTGCAAC-CTTGGCC-ATCATC-T-GC-ATCAC-AGTTATCC-CCTTGATGA-TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC-ATTGTGGGCA-TTGCAGGAG-CTAGTAGGGAGTAC-AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG-AGATGGCTACAGAAATGTTTACTGAAAAAAATGTCTTCAGGGATTTGCTCATTTTCTCATTTCTTAATCTCTTTCGCAATCTTGCAAACAATTGATGCTTGTATGGCCTATATACAATTATAC-AACTTA-AAAGGCATGCCGAACCTTACAAAAGAAAAGAAAAAGGGCATGCCGATGGCCAAAAAAAAA]
[+] EMBL AK065748 [ACTCACACGCGGAGACAAAAACACCTTCACAATTCGCGAAAGCTCAGCTGCTTCTGCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTGCGCCTCGCGGTCCCGACGGCGGCGCCGCCCGTGCTGCCGCCGCTGCGGCAGTCTGCGGTGCGGGCGGCGGGCTCCCCCGCCGCCGCCGCTCTGCGGACGGGCGCGCTCAGGGGATGCGCCTCGCTGCCGCTGAAGCCGCAGCCGCTGCTGGGGGCGGGACAGGCGGCGAGCGGTCGCCGGGGTGGCGCCGCCGTGTGCCACTCGTCGGCGCACCTGAGCGCGCGGACGATGCAATGGGTCTCCGCCGGGGCCACCGCAGTGCTATTGCTTGCTAAAGGCACAGCCATACACAAATCTTTCCTTGTGCCACTGTTTGCTCTGCTAGCACCTTGCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCAGT GGACTGC TTTTCTT GCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGGTACCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AG AAAAATAATAGCTTTGTAATGCAACACCCTGTCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAA ]
[+] EMBL AY181210 [ AACACCTTCACAATTCGCGAAAGCTCAGCTGCTTCTGCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTGCGCCTCGCGGTCCCGACGGCGGCGCCGCCCGTGCTGCCGCCGCTGCGGCAGTCTGCGGTGCGGGCGGCGGGCTCCCCCGCCGCCGCCGCTCTGCGGACGGGCGCGCTCAGGGGATGCGCCTCGCTGCCGCTGAAGCCGCAGCCGCTGCTGGGGGCGGGACAGGCGGCGAGCGGTCGCCGGGGTGGCGCCGCCGTGTGCCACTCGTCGGCGCACCTGAGCGCGCGGACGATGCAATGGGTCTCCGCCGGGGCCACCGCAGTGCTATTGCTTGCTAAAGGCACAGCCATACACAAATCTTTCCTTGTGCCACTGTTTGCTCTGCTAGCACCTTCCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCAGT GGACTGC TTTTCTT GCTCTTTTGGTGCGTTTGTTCTTCTGCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGGTACCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AG AAAAATAATAGCTTTGTAATGCAACACCCTGTCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGAAAAAA ]
[+] EMBL BI798166 [ CGCCCGGACGATCCAAT GGTCTCC CCGGGCCCACC CAGTGCTATTGCTTG TAAAGGCACACCCATACAC AATCTTTCCTTGT CCCCTGTTTGCTTTGCTAGCACCTTCCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCATT GGACTGC TTTTCTT GCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGT CAGCACTGTCTTTGGCATTGGCTGGGTATCTC GCTTTTCAGCACTTCACCCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAA CCGTTGTTC ATTGT GGCA TT CAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGC ACACCCTATCAGACTTTGT GCCTTGATAAAAGTAATAATCCATG AGATGGCTACAGAAATGTTTACTGAAAAA ]
[+] EMBL BI797128 [ ATTGCTTGCTAAAGGCACAGCCATACAC AATCTTTCCTTGT CCACTGTTTGCTTTGCTAGCACCTTCCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCATT GGACTGC TTTTCTT GCTCTTTTGGTGCCTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTCGAAGGTGGT CAGCACTGTCTTTGGCATTGGCTGGGTATCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGCTTTAGGGAAAGCATTTGAT CAGGGATC ATAA TTGCAAC CTT GCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCT GCAA CCGTTGTTC ATTGTGGCCA TTCCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATCCAACACCCTACCAGACTTTGT GCCTTGATAAAAGTAATAATTTATGCAGATGGC CCAGAAATGTTTACTGAAAAA ]
[+] EMBL BI798922 [ GCTTTGCTAGCACCTTGCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCATTGGGACTGC TTTTCTTGGCTCTTTTGGTGC TTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGGTATCTC GCTTTTCAGCACTTCA CCA GGTT GGGGTTTAGGGAAAGCATTTGAT CAGGGATC ATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGC ACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGAAAAAAAaaa ]
[+] EMBL BI797637 [ AGCACCTTGCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCATT GGACTGC TTTTCTT GCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGGTATCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGAAAAAA ]
[+] EMBL BI794870 [ ttCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCATT GGACTGC TTTTCTT GCTCTTTTGGTGC TTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGGTATCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC CATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAGCCTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGC ACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGAAAAA ]
[+] EMBL BI797550 [ TCTCATGGATCAAGAGTGACTATGGTCATT GGACTGC TTTTCTT GCTCTTTTGG GCGTTTGTTCTTC CCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCC GTTGATGAATCTGAGGGGAACTC AAGGTGGT CAGCCCTGTCTTTGCCCTT GCTGGGTATCTC GCTTTTCAGCCCTTCA CCA GGTTGGGGTTTTAGGGAAAGCATTTGAT CCGGGATC AATAA TTGCAAC CTT GCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCT GCAA CCGTTGTTC ATTGT GGC TTCCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGT GCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGATGCTGATGTCTTCAGGGAaa ]
[+] EMBL BI798097 [ TCTCATGGATCAAGAGTGACTAT GTCATT GGACTGC TTTTC T GCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATTGCCTGGGTATCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGGTTTAGGGAAAGCATTTGATCCAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGACCCTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGCCA TTGCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGT GCCTTGATAAAAGTAATAATTCATG AGATGGCTACAGAAATGTTTACTGAAAAA ]
[+] EMBL BI795478 [ CATGGATCAAGAGTGACTATGGTCATT GGACTGCTTTTTCTT GCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCACGTTGATGAATCTGAGGGGAACTC AAGGTGGT CAGCACTGTCTTTGGCATT GCTGGGTATCTC GCTTTTCAGCACTTCA CCA GGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATCAAATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGAAAAA ]
[+] EMBL BI804599 [ A GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATT GCTGGGTATCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGATGCTGATGTCTTCAGGGATTTGCTCATTTTCTCATTTCTTAATCTCTTTCGCAATCTTGCAAACAATTGATGCTTGTATGGCCTATATACAATTATAC AACTTA AAAGGCATGCCGAACCTTACAAAAGAAAAGAAAAAGGGCATGCCGATGGCCAAAAAAAAA]
[+] EMBL BI800578 [ CTGAGGGGAACTC AA GT GT CA CACTGTCTTT GCATT GCTGGGTATCTCGGCTTTTCAGCACTTCA CCA GGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAA CCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGATGCTGATGTCTTCAGGGATTTGCTCATTTTCTCATTTCTTAATCTCTTTCGCAATCTTGCAAAC ATTGATGCTTGTATGGCCTATATACAATTATACAAACTTATAAAGGCATGCCGAACCTTACAAAA ]
[+] EMBL C99261 [ TTAGGGAAAGCATTTGAT CAGGGATC AATAA TTNCANC CTTGNCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTNCAGGAG CTAGTAGGGAGTAC AG AAAAATAATAGCTTTGTAATGCAACACCCTGTCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTNCTGNAAAAAAaaaaana ]
[+] EMBL BI802291 [ ATC AATAAGTGGCAACATTTGGCCAATCATCGTGGCGATCACAAGTTATCCACCTTGATGA TGTTGTTCTGAGTCAGATTAAGCT GCAAGCCGTGGTTCAATTGT GGCATTTGCAGGAG CTAGTAGGGAGTACAAGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGATGCTGATGTCTTCAGGGATTTGCTCATTTTCTCATTTCTTAATCTCTTTCGCAATCTTGCAAACAATTGATGCTTGTATGGCCTATATACAATTATACAAACTTATAAAGGCATGCCGAACCTTACAAA ]
consensusID : consensus_15245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[CCCCCCCCCGGTGCCCACTCTGTCGGCCGCCCCTGGAGCGCCGCGGCACGACTCCAAGTGGTTCTCCCCCCGGGCCCCACCCGCAGTGCTTATTGCTTGCTAAAGCACCAGCCTATACCATATCTTTCCGTGGGCCACCTGTTTGCTTTTGCTAGCACCTGCAGTGTAATCTCATGGATCACAGAGTGACTATGGTCATTGGACTGCTTTTCTTGCTCTTTTGGTGCGTTTGTTCTTCCCATTCCAGGTGAGCCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAGTTGATGAATCTGAGGGGAACTCAAGGTGGTCCAGCACTGTCTTTGCCATTGCTGGGTATCTCGCTTTTCAGCACTTCACCAGGTTGGGGTTTTAGGGAAAGCATTTGATCAGGGATCAATAATGCCAACTTGCCATCATCTGCATCACGTTATCCCTGGATGATGTTGTTCTGAGTCAGATTAACTGCAACCTTGTTCTTGTGGCCTTCCAGGAGCTAGTAGGGAGTACGAAAAATAATAGCTTTGTAACCAACACCCTATCAGACTTGTGCTGATAAAAGTAATAATTTATGAGATGCTACAGAAATGTTTACTGAAAAA]
[+] EMBL BI799190 [CCCCCCCCCGGTGCCCACTCTGTCGGCCGCCCCTGGAGCGCCGCGGCACGACTCCAAGTGGTTCTCCCCCCGGGCCCCACCCGCAGTGCTTATTGCTTGCTAAAGCACCAGCCTATACCATATCTTTCCGTGGGCCACCTGTTTGCTTTTGCTAGCACCTGCAGTGTAATCTCATGGATCACAGAGTGACTATGGTCATTGGACTGCTTTTCTTGCTCTTTTGGTGCGTTTGTTCTTCCCATTCCAGGTGAGCCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAGTTGATGAATCTGAGGGGAACTCAAGGTGGTCCAGCACTGTCTTTGCCATTGCTGGGTATCTCGCTTTTCAGCACTTCACCAGGTTGGGGTTTTAGGGAAAGCATTTGATCAGGGATCAATAATGCCAACTTGCCATCATCTGCATCACGTTATCCCTGGATGATGTTGTTCTGAGTCAGATTAACTGCAACCTTGTTCTTGTGGCCTTCCAGGAGCTAGTAGGGAGTACGAAAAATAATAGCTTTGTAACCAACACCCTATCAGACTTGTGCTGATAAAAGTAATAATTTATGAGATGCTACAGAAATGTTTACTGAAAAA]
consensusID : consensus_15245#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[GCCCGNNTAATNNGGGANCNGAGGNGGAGAAGANGNTTCCCCGGNCCCNCGATNTTTGTNGNGAAGGANCAGCAAAACNATNNTTCCANGGGCCNAAGTGGANGNAACACNNGAAGNNTAATTTNAGGATNGAGNAGGANAGGTCNAATGGGGATTTTATAGTTNNGGGGGGNNNGTTNTTANNCATTNCAAGGGGAGANGGAGCTTCNAATTGTCAAATAAGGTGNTTGGGAGNGTTGTCCNTAACCCAGTTGATGAATNTGAGGGGAATTCAAGGNGGNGCAGCACTGTCTTNGGCATTGGNTGGGTATNTCGCTTTTCAGCACTTCACCAGGGTTGGGGGTTTAGGGAAAGCATTTGATCAGGGATCAATAATNGCAACCTTGGCCATCATATGCATCACAGTTATCCCCTTGATGATGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTCATTGTGGGCATTGCAGGAGCTAGTAGGGAGTACAGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATGAGATGGCTACAGAAATGTTTACTGAAAAAAAAAA]
[-] EMBL AA753259 [GCCCGNNTAATNNGGGANCNGAGGNGGAGAAGANGNTTCCCCGGNCCCNCGATNTTTGTNGNGAAGGANCAGCAAAACNATNNTTCCANGGGCCNAAGTGGANGNAACACNNGAAGNNTAATTTNAGGATNGAGNAGGANAGGTCNAATGGGGATTTTATAGTTNNGGGGGGNNNGTTNTTANNCATTNCAAGGGGAGANGGAGCTTCNAATTGTCAAATAAGGTGNTTGGGAGNGTTGTCCNTAACCCAGTTGATGAATNTGAGGGGAATTCAAGGNGGNGCAGCACTGTCTTNGGCATTGGNTGGGTATNTCGCTTTTCAGCACTTCACCAGGGTTGGGGGTTTAGGGAAAGCATTTGATCAGGGATCAATAATNGCAACCTTGGCCATCATATGCATCACAGTTATCCCCTTGATGATGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTCATTGTGGGCATTGCAGGAGCTAGTAGGGAGTACAGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATGAGATGGCTACAGAAATGTTTACTGAAAAAAAAAA]
consensusID : consensus_15245#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence
[CCCGCCAAGGTAATCTCATGGATCAAGAGTGGACTATGGGTCATGTGGACTGCTTTTCTGCTCTTTTGGTGCATTTGTTCTTCACCATTCCAGGTGAGTCTGGAGCTTCCATGTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAAGTGTGATGAATCTGAGGGGAACTCAAGGTGGTCCAGCACATGTCTTTGCATTGCTGGGTTATCTCGCTTTTCAGCACTTCACCAGGGTTGGGGTTTTAGGGAAAGCATTTGATCACGGGATCAAATAATTCGCAACCTGTGCCCATCATCTGCATGCACAAGTTACTCCCCTTAGATGATGTTGTTCTGAGTCAGATTGAAGCTCGGCAAGCCAGTTGTTCACTTGTGGCCATTCCAGGAGCTAGTAGG]
[+] EMBL BI795800 [CCCGCCAAGGTAATCTCATGGATCAAGAGTGGACTATGGGTCATGTGGACTGCTTTTCTGCTCTTTTGGTGCATTTGTTCTTCACCATTCCAGGTGAGTCTGGAGCTTCCATGTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAAGTGTGATGAATCTGAGGGGAACTCAAGGTGGTCCAGCACATGTCTTTGCATTGCTGGGTTATCTCGCTTTTCAGCACTTCACCAGGGTTGGGGTTTTAGGGAAAGCATTTGATCACGGGATCAAATAATTCGCAACCTGTGCCCATCATCTGCATGCACAAGTTACTCCCCTTAGATGATGTTGTTCTGAGTCAGATTGAAGCTCGGCAAGCCAGTTGTTCACTTGTGGCCATTCCAGGAGCTAGTAGG]
consensusID : consensus_15245#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence
[AACACCTTCACAATTCGCGAAANTCAGCTGCTTCTNCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTNCGCCTNGGGGTCCCGACGGCGGCGCCCCGTGCTGCCGCGCTGCNATNCNTGNCGGTNCGGGCNGCGGGCTCCCCCGCCNGCTNCNTTGCGAGCTGGNGCGCGCTCAGGGGATGCGCCTNGCTGCCGCTGAAGCCGCAGCCGC]
[+] EMBL OSC521 [AACACCTTCACAATTCGCGAAANTCAGCTGCTTCTNCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTNCGCCTNGGGGTCCCGACGGCGGCGCCCCGTGCTGCCGCGCTGCNATNCNTGNCGGTNCGGGCNGCGGGCTCCCCCGCCNGCTNCNTTGCGAGCTGGNGCGCGCTCAGGGGATGCGCCTNGCTGCCGCTGAAGCCGCAGCCGC]
consensusID : consensus_15245#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence
[ACAATTCGCGAAAGTCAGCTGCTTCTGCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGANGTCCATCTCGCTGNGCCTCGCGGTCCCGACGGCGGCGCCCCCGTNCTGCCGCCGCTGCGANTNCATAGCGGTGCGGGCGGCGGGCTCCCCCGNCGNCCGNTNTNCGAACGGNNGAGCTCAGGGGATGCGCCTNGTTGCCGGCTG]
[+] EMBL OSC18172 [ACAATTCGCGAAAGTCAGCTGCTTCTGCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGANGTCCATCTCGCTGNGCCTCGCGGTCCCGACGGCGGCGCCCCCGTNCTGCCGCCGCTGCGANTNCATAGCGGTGCGGGCGGCGGGCTCCCCCGNCGNCCGNTNTNCGAACGGNNGAGCTCAGGGGATGCGCCTNGTTGCCGGCTG]
consensusID : consensus_15245#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 165 fasta sequence
[AGCTGGCAAGCCGTTGGTTGCCTTGTGGGCCTTGCCGGAGCTAGTGAGGGAGTGACCAGAGAAAAATGAATGAGCTTTTGTAATGCACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATGAGATGGCTACAGAAATGTTTACTGAAAAAAAAAA]
[+] EMBL BI795429 [AGCTGGCAAGCCGTTGGTTGCCTTGTGGGCCTTGCCGGAGCTAGTGAGGGAGTGACCAGAGAAAAATGAATGAGCTTTTGTAATGCACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATGAGATGGCTACAGAAATGTTTACTGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15245#1 ------------------------------------------------------------
consensus_15245#3 ------------------------------------------------------------
consensus_15245#2 ------------------------------------------------------------
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 ACTCACACGCGGAGACAAAAACACCTTCACAATTCGCGAAAGCTCAGCTGCTTCTGCTTC 60
consensus_15245#4 ------------------------------------------------------------
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 ------------------------------------------------------------
consensus_15245#3 ------------------------------------------------------------
consensus_15245#2 ------------------------------------------------------------
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 TTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTGCGCCTCGCGGTCCCGAC 120
consensus_15245#4 ------------------------------------------------------------
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 ------------------------------------------------------------
consensus_15245#3 ------------------------------------------------------------
consensus_15245#2 ------------------------------------------------------------
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 GGCGGCGCCGCCCGTGCTGCCGCCGCTGCGGCAGTCTGCGGTGCGGGCGGCGGGCTCCCC 180
consensus_15245#4 ------------------------------------------------------------
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 ------------------------------------------------------------
consensus_15245#3 ------------------------------------------------------------
consensus_15245#2 -------------GCCCGNNTAATNNGGGANCNGAGGNGGAGAAGANGNTTCCCCGGNCC 47
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 CGCCGCCGCCGCTCTGCGGACGGGCGCGCTCAGGGGATGCGCCTCGCTGCCGCTGAAGCC 240
consensus_15245#4 ------------------------------------------------------------
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 ----------------------------------CCCCCCCCCGGTGCCCACTCTGTCGG 26
consensus_15245#3 ------------------------------------------------------------
consensus_15245#2 CNCGATNTTTGTNGNGAAGGANCAGCAAAACNATNNTTCCANGGGCCNAAGTGGANGNAA 107
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 GCAGCCGCTGCTGGGGGCGGGACAGGCGGCGAGCGGTCGCCGGGGTGGCGCCGCCGTGTG 300
consensus_15245#4 ------------------------------------------------------------
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 CCGCCCCTGGAGCGCCGCGGCACGACTCCAAGTGGTTCTCCCCCCGGGCCCCACCCGCAG 86
consensus_15245#3 ------------------------------------------------------------
consensus_15245#2 CACNNGAAGNNTAATTTNAGGATNGAGNAGGANAGGTCNAATGGGGATTTTATAGTTNNG 167
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 CCACTCGTCGGCGCACCTGAGCGCGCGGACGATGCAATGGGTCTCCGCCGGGGCCACCGC 360
consensus_15245#4 ------------------------------------------------------------
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 TGCTTATTGCTTGCTAAAGCACCAGCCTATACCATATCTTTCCGTGGGCCACCTGTTTGC 146
consensus_15245#3 ------------------------------------------------------------
consensus_15245#2 GGGGGNNNGTTNTTANNCATTNCAAGGGGAGANGGAGCTTCNAATTGTCAAATAAGGTGN 227
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 AGTGCTATTGCTTGCTAAAGGCACAGCCATACACAAATCTTTCCTTGTGCCACTGTTTGC 420
consensus_15245#4 ------------------------------------------------------------
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 TTTTGCTAGCACCTGCAGTGTAATCTCATGGATCACAGAGTGACTATGG-TCAT-TGGAC 204
consensus_15245#3 ----------CCCGCCAAGGTAATCTCATGGATCAAGAGTGGACTATGGGTCATGTGGAC 50
consensus_15245#2 TTGGGAGNGTTGTCCNTAACCCAGTTGATGAATNTGAGGGGAATTCAAGGNGGNGCAGCA 287
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 TTTGCTAGCACCTTGCAGTGTAATCTCATGGATCAAGAGT-GACTATGG-TCAT-TGGAC 477
consensus_15245#4 ------------------------------------------------------------
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 TGCTTTTCTTGCTCTTTTGGTGCGTTTGTTCTTC-CCATTCCAGGTGAGCCTGGAGCTTC 263
consensus_15245#3 TGCTTTTCT-GCTCTTTTGGTGCATTTGTTCTTCACCATTCCAGGTGAGTCTGGAGCTTC 109
consensus_15245#2 CTGTCTTNGGCATTGGNTGGGTATNTCGCTTTTCAGCACTTCACCAGGGTTGGGGGTTTA 347
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 TGCTTTTCTTGCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAG-CTGGAGCTTC 536
consensus_15245#4 ------------------------------------------------------------
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 CAT-TGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAGTTG--ATGAATCTGAGGG 320
consensus_15245#3 CATGTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAAGTGTGATGAATCTGAGGG 169
consensus_15245#2 GGGAAAGCATTTGATCAGGGATCAATAATNGCAACCTTGGCCATCATATGCATCACAGTT 407
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 CAT-TGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAGTTG--ATGAATCTGAGGG 593
consensus_15245#4 ------------------------------------------------------------
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 GAACTCAAGGTGGTCCAGCAC-TGTCTTTGCCATTGCTGGGT-ATCTCGCTTTTCAGCAC 378
consensus_15245#3 GAACTCAAGGTGGTCCAGCACATGTCTTTGC-ATTGCTGGGTTATCTCGCTTTTCAGCAC 228
consensus_15245#2 ATCCCCTTGATGATGTTGTTC-TGAGTCAGATTAAGCTGG--CAAGCCGTTGTTCA--TT 462
consensus_15245#6 ----------------------------------AGCTGG--CAAGCCGTTGGTTGCCTT 24
consensus_15245#0 GAACTCAAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGG-TATCTCGCTTTTCAGCAC 652
consensus_15245#4 -------------------AACACCTTCACAATTCGCGAAANTCAGCTGCT-TCTNCTTC 40
consensus_15245#5 ----------------------------ACAATTCGCGAAAGTCAGCTGCT-TCTGCTTC 31
** * *
consensus_15245#1 TTCACCAGG-TTGGGGTTTTAGGGAAAGCATTTGATCA-GGGATCAA-TAATGC-CAACT 434
consensus_15245#3 TTCACCAGGGTTGGGGTTTTAGGGAAAGCATTTGATCACGGGATCAAATAATTCGCAACC 288
consensus_15245#2 GTGGGCATTGCAGGAGCTAGT-AGGGAG----T----A-CAGAAAAAATAATA---G--C 507
consensus_15245#6 GTGGGCCTTGCCGGAGCTAGTGAGGGAG----TGACCA-GAGAAAAATGAATG---AGCT 76
consensus_15245#0 TTCACCAGGGTTGGGGGTTTAGGGAAAGCATTTGATCA-GGGATCAATAATTGC--AACC 709
consensus_15245#4 TTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTNCGCCTNGGGGTCCCGAC 100
consensus_15245#5 TTCTTCTTCTTTCGGATTCGAGAAGAGGANGTCCATCTCGCTGNGCCTCGCGGTCCCGAC 91
* * * * *
consensus_15245#1 TG---CCATCATCTGCAT---CAC-GTTATCCC---TGGATGATGTTGTTCTGAG----- 479
consensus_15245#3 TGTGCCCATCATCTGCATGCACAA-GTTACTCCCCTTAGATGATGTTGTTCTGAG----- 342
consensus_15245#2 T----TTGTAAT--GCAA---CAC-CCTATC------AGACTTTGTGGCCTTGA------ 545
consensus_15245#6 T----TTGTAAT--GCA----CAC-CCTATC------AGACTTTGTGGCCTTGA------ 113
consensus_15245#0 TTGG-CCATCATCTGCAT---CACAGTTATCCCC--TTGATGATGTTGTTCTGAG----- 758
consensus_15245#4 GGCG-GCGCCCC--GTGCTGCCGC-GCTGCNATNCN-TGNCGGTNCGGGCNGCGGGCTCC 155
consensus_15245#5 GGCG-GCGCCCCC-GTNCTGCCGCCGCTGCGANTNCATAGCGGTGCGGGCGGCGGGCTCC 149
* * * * *
consensus_15245#1 TCAGATTAA----CTGCAACCT-TGTT-----CTTGTGGCC-TTCCAGGAGCTAGTAGGG 528
consensus_15245#3 TCAGATTGAAGCTCGGCAAGCC-AGTTGTTCACTTGTGGCCATTCCAGGAGCTAGTAGG- 400
consensus_15245#2 TAAAAGTAATAATTTATGAGAT-GGCTA-----CAGAAATGTTTACTGAAAAAAAAAA-- 597
consensus_15245#6 TAAAAGTAATAATTTATGAGAT-GGCTA-----CAGAAATGTTTACTGAAAAAAAAAA-- 165
consensus_15245#0 TCAGATTAA--GCTGGCAAGCC--GTTGTTC-ATTGTGGGCATTGCAGGAGCTAGTAGGG 813
consensus_15245#4 CCCGCCNGCTNCNTTGCGAGCTGGNGCGCGCTCAGGGGATGCGCCTNGCTGCCG-CTGAA 214
consensus_15245#5 CCCGNCGNCCGNTNTNCGAAC--GGNNGAGCTCAGGGGATGCGCCTNGTTGCCGGCTG-- 205
* * *
consensus_15245#1 AGTACGAAAAATAATAGCTTTGTAACCAACACCCTATCAGACTTGTGCTGATAAAAGTAA 588
consensus_15245#3 ------------------------------------------------------------
consensus_15245#2 ------------------------------------------------------------
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 AGTACAGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATA 873
consensus_15245#4 GCCGCAGCCGC------------------------------------------------- 225
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 TAATTTATGAGATGCTACAGAAATGTTTACTGAAAAA----------------------- 625
consensus_15245#3 ------------------------------------------------------------
consensus_15245#2 ------------------------------------------------------------
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 AAAGTAATAATTTATGAGATGGCTACAGAAATGTTTACTGAAAAAAATGTCTTCAGGGAT 933
consensus_15245#4 ------------------------------------------------------------
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 ------------------------------------------------------------
consensus_15245#3 ------------------------------------------------------------
consensus_15245#2 ------------------------------------------------------------
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 TTGCTCATTTTCTCATTTCTTAATCTCTTTCGCAATCTTGCAAACAATTGATGCTTGTAT 993
consensus_15245#4 ------------------------------------------------------------
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 ------------------------------------------------------------
consensus_15245#3 ------------------------------------------------------------
consensus_15245#2 ------------------------------------------------------------
consensus_15245#6 ------------------------------------------------------------
consensus_15245#0 GGCCTATATACAATTATACAACTTAAAAGGCATGCCGAACCTTACAAAAGAAAAGAAAAA 1053
consensus_15245#4 ------------------------------------------------------------
consensus_15245#5 ------------------------------------------------------------
consensus_15245#1 -------------------------
consensus_15245#3 -------------------------
consensus_15245#2 -------------------------
consensus_15245#6 -------------------------
consensus_15245#0 GGGCATGCCGATGGCCAAAAAAAAA 1078
consensus_15245#4 -------------------------
consensus_15245#5 -------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||