These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 934 fasta sequence [CCGCCCACGCNTCCGGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCAGCCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAAGAAGGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGAAGGCGGCGGCGC-CGCCGGTG-AAGCTGC-TGACGAACGTGGAGAAGCTGCGGCTGC-TGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGGGCTGTCGCTGTCGGCGGTGGAGCGGCTGGGCCTGTTGTCCAAGGCGGAGGAGCTGGAGGTGCTGTCGGCGGCGACCGACCCGGGCACCCCCGGCGCGCTGC-TC-GGCGTCGCGCTGCTGCTGCTCGCCGCCGGCCCCGCC-GTC-GTCTACCTCGTCCCGGA-GGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGATGTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAATTTTTTTCTCTAAAAAAAAAAAAAAAA] [+] EMBL OSS14129A [CCGCCCACGCNTCCGGTACGTNTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCNCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCAGTCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAANAAGGGGGACGACGGTNTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGAAGACGG ] [+] EMBL AK059885 [ gagaggtGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCAGCCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAAGAAGGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGAAGGCGGCGGCGC CGCCGGTG AAGCTGC TGACGAACGTGGAGAAGCTGCGGCTGC TGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGGGCTGTCGCTGTCGGCGGTGGAGCGGCTGGGCCTGTTGTCCAAGGCGGAGGAGCTGGAGGTGCTGTCGGCGGCGACCGACCCGGGCACCCCCGGCGCGCTGC TC GGCGTCGCGCTGCTGCTGCTCGCCGCCGGCCCCGCC GTC GTCTACCTCGTCCCGGA GGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCT ] [+] EMBL AK104945 [ TGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCAGCCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAAGAAGGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGAAGGCGGCGGCGC CGCCGGTG AAGCTGC TGACGAACGTGGAGAAGCTGCGGCTGC TGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGGGCTGTCGCTGTCGGCGGTGGAGCGGCTGGGCCTGTTGTCCAAGGCGGAGGAGCTGGAGGTGCTGTCGGCGGCGACCGACCCGGGCACCCCCGGCGCGCTGC TC GGCGTCGCGCTGCTGCTGCTCGCCGCCGGCCCCGCC GTC GTCTACCTCGTCCCGGA GGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGTTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGATGTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAATTTTT ] [+] EMBL OSS13807A [ GGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCAGNCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAANAAGGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGAAGNCGGCGGCGC CG GNTTGAAAGCTGC TGACGAACGTGGAGAAGCTGCGGCTGC TGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGA NGCGCGGGGCTGTCGCTGTCGGCGGTGGAGCGGCTGGGCCTGTTGTCCAAGGCGGAGGAGCTNGAGGTNCTGTCGGCGGCGACCGACCCGGGCAACCCCGGCGCGCTTCTTC GGCGTCGgg ] [+] EMBL OSS14878A [ CCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGNCGGCCACCGTCGCGGCGAGGCCGAGCAGCCGCCGCCTTCACAAGGTCGCCGTCATGGCCACCCAGAAGCCCACCTCCGGCACAAGAAGGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGTGGCCGAGGCAGACGACGAGCGGGAAGGCGGCGGCGCGCG NNTTG AAGCTGCTTGACGAACGTGGAGAAGCTTCGGCTTCTTGACGAAGGCGG ] [+] EMBL AU198235 [ CCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCCTCGCGGCGAGGCCGAGCAGCCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAAGAAGGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGAAGGCGGCGGCGC CGCCGGTG AAGCTGC TGACGAACGTGGAGAAGCTGCGGCTGC TGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGGGCTGTCGCTGTCGGCGGTGGAGCGGCTGGGCCTGTTGTCCAAGGCGGAGGAGCTGGAGGTGCTGTCGGCGGCGACCGACCCGGGCACCCCCGGCGCGCTGC TC GGCGTCGCGCTGCTGCTGCTCGCCGCCG ] [+] EMBL OSS15866A [ ATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCAGCCGCCGCCTTCACAAGGTCGCCGCCATGGNCACCCAGAAGCCCACCTCCGGCACAAGAAGGGGGACGACGGTGTACTTCCCGGTNGGGGAGCCGNGGCCGAGGCAGACGACGAGCGGAAAGNCGGCGNCGC CG CTTNA AAGCTNC TGACGAACGTGGAGAAGCTGCGGCTGC TGACGAAGGCGGAGAAGG ] [-] EMBL CB664899 [ TGCGTCTGT TGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGTCGGAGGAGCGCGCCGGGCTGTCGCTGTCGGCGGTGGAGCGGATGGGCCTGCTGTCCAAGTCGGAGGAGCTGGAGGTGATGTAGGGGGAGCCAGACCCGGGCACCCCCTGCGCGTTGC TC GGCGTCGAGCTGCTGTTGCTCCCCGCCGGCCCCGCT GTC GTCTACCTCGTCCCGGA GGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTAGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGTTTGGCAAGGCTAATTTTCCTACCTGATGAAGTTTACGA ] [+] EMBL AU075874 [ cCGAAGAAGCTGAAGGTNCTGTCGCCGGCGACCGACCCGGGCACCCCCGGCGCGCTGC TCGGGCGTCGCGCTGCTGCTGCTCGCCGCCGGCCCCGCC GTC GTCTACCTCGTCCCGGA GGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGATGTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAATTTTTTTCTCTAAAAAAAAAAAAAAAA] [+] EMBL BI805331 [ ctGCCTGTCGGTCTACCTCGTCCCGGATGGAGTACCCATGGGAGTTC CCGTCCA GCCGT GTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGATGTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAATTTTTTTCTCTACTTTAAAAAAAAAA ] consensusID : consensus_15246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [ATTCGGCACGAGCGGCGGCNACCGACCGGGCANCCCCGGCGCGCTGCTCGGCGTCNCGCTGCTGCTGCTCGCCGCCGGCCCCGCCGTCGTCTACCTCGTCCCGGANGAGTACCCATGGGAGGTCGCCGTCCAAGCCGTGGTCNCGCTCGCCTGCGTCNTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTATCACTTAATTTGCAATTAGTGTGTAATTAAGCAGANTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAACTGATGTTGATTAAGATNTGACNTGCATACGTATANTGAGTATGTATAAAACATGCNATATTTATAATTTNNNT] [+] EMBL BE228317 [ATTCGGCACGAGCGGCGGCNACCGACCGGGCANCCCCGGCGCGCTGCTCGGCGTCNCGCTGCTGCTGCTCGCCGCCGGCCCCGCCGTCGTCTACCTCGTCCCGGANGAGTACCCATGGGAGGTCGCCGTCCAAGCCGTGGTCNCGCTCGCCTGCGTCNTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTATCACTTAATTTGCAATTAGTGTGTAATTAAGCAGANTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAACTGATGTTGATTAAGATNTGACNTGCATACGTATANTGAGTATGTATAAAACATGCNATATTTATAATTTNNNT] consensusID : consensus_15246#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 488 fasta sequence [AGAAGCTGCGGCTGCTGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGNGCTGTCGCTGTCGGCGGTGGAGCGGCTGGG-CCTGTTGT-CCAAGGCCGTGGTC-GCGCTCGCCTGCGTCGTCGGTGGCT-CCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTAC-TGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGAT-GTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAAAAAA] [+] EMBL OSC8741 [AGAAGCTGCGGCTGCTGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAG GCGCNGNGCTGTCGCTGTCGGCGGTGGAGCGGCTGGG CCTGTTGT CCAAGGCCGTGGTC GCGCTCGCCTGCGTCGTCGGTGGCT CCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGAT ATTGTATCTAAATGGTTTGGCAAGGTTAATTTACCTAGCTGATGGTTGATTAag ] [+] EMBL AU083560 [ GAAGCTNCGGCTGCTGACGAAGGCGGAGAAGCCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGGGCTGTCGCTGTCGNCGGTGGAGCGNCTGGGCCCTGTTGTCCCAAGGCCGTGGTCNCCGCTCCNCTGCGTCGTCGGTGGCTCCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTAC TGTGCCCCTACCCTACGCCTTGATTTTGTNCGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGAT GTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAAAAAA] [+] EMBL OSS15552A [ GAAGCTGCGGCTGCTGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGA NGCGCCGNGCTGTCGCTGTCGGCGGTGGAGCGGCTGGG CCTGTTGT CCAAGGCCGTGGTC GCGCTCGCCTGCGTCGTCGGTGGCT CCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTAC TGTGCCCCTACCCTACGGCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGAT GTTGATTAGGATGTTACGNGCATACGNATGAGTATGTATAAAACATGCTA ] [+] EMBL AU075886 [ GCCNTGGTC GCGCTCGCCTNCGTCGTCGGTGGCT CNACCG CTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTNATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTAC TGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGAT GTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAAAAAA] [+] EMBL AU096737 [ CGTCGGTGGCT CCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTAC TGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTAaaaaaaa ] [+] EMBL AU162077 [ caacCCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTAC TGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTAaaaaaa ] consensusID : consensus_15246#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 463 fasta sequence [TGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGCGGCGCCGCCGGTGAAGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGGCCCCGCCGTCGTCTACCTCGTCCCGGAGGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAAAAAAAAAAAAAA] [+] EMBL AU163865 [TGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGCGGCGCCGCCGGTGAAGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGGCCCCGCCGTCGTCTACCTCGTCCCGGAGGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAAAAAA ] [-] EMBL CF324822 [ CAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAAAAAAAAAAAAAA] consensusID : consensus_15246#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [GTGTACGTNTGGTGGTAGGAGAGGGAATCCATCCATGGTGATNGACGCAGCTAGAGCTGCNGCNCCGGTNNAGNGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGNCCCGCCTACGTCTACCTCGTCCCGGAGAGTACCCATNGGAGGTCGCCGTCCAGGCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAA] [+] EMBL OSC933 [GTGTACGTNTGGTGGTAGGAGAGGGAATCCATCCATGGTGATNGACGCAGCTAGAGCTGCNGCNCCGGTNNAGNGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGNCCCGCCTACGTCTACCTCGTCCCGGAGAGTACCCATNGGAGGTCGCCGTCCAGGCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15246#0 CCGCCCACGCNTCCGGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACG 60 consensus_15246#2 ------------------------------------------------------------ consensus_15246#1 ------------------------------------------------------------ consensus_15246#3 ------------------------------------------------------------ consensus_15246#4 ------------------------------------------------------------ consensus_15246#0 CAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCA 120 consensus_15246#2 ------------------------------------------------------------ consensus_15246#1 ------------------------------------------------------------ consensus_15246#3 ------------------------------------------------------------ consensus_15246#4 ------------------------------------------------------------ consensus_15246#0 GCCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAAGAA 180 consensus_15246#2 ------------------------------------------------------------ consensus_15246#1 ------------------------------------------------------------ consensus_15246#3 ------------------------------------------------------------ consensus_15246#4 ------------------------------------------------------------ consensus_15246#0 GGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGA 240 consensus_15246#2 ------------------------------------------------------------ consensus_15246#1 ------------------------------------------------------------ consensus_15246#3 ------------------------------------------------------------ consensus_15246#4 ------------------------------------------------------------ consensus_15246#0 AGGCGGCGGCGCCGCCGGTGAAGCTGCTGACGAACGTGGAGAAGCTGCGGCTGCTGACGA 300 consensus_15246#2 ------------------------------------------------------------ consensus_15246#1 ------------------------------------------------------------ consensus_15246#3 ------------------------------------------------------------ consensus_15246#4 ------------------------------------------------------------ consensus_15246#0 AGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGGGCTGTCGCTGTCGGCGG 360 consensus_15246#2 ------------------------------------------------------------ consensus_15246#1 ------------------------------------------------------------ consensus_15246#3 ------------------------------------------------------------ consensus_15246#4 ------------------------------------------------------------ consensus_15246#0 TGGAGCGGCTGGGCCTGTTGTCCAAGGCGGAGGAGCTGGAGGTGCTGTCGGCGGCGACCG 420 consensus_15246#2 ------------------------------AGAAGCTGCGGCTGCTGACGAAGGCGGAGA 30 consensus_15246#1 -----------------------------------ATTCGGC-ACGAGCGGCGGCNACCG 24 consensus_15246#3 --------TGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTA 52 consensus_15246#4 -------GTGTACGTNTGGTGGTAGGAGAGGGAATCCATCCATGGTGATNGACGCAGCTA 53 ** consensus_15246#0 ACCCGGGCACCCCCGGCG---CGCTGCTCGGCGTCGCGCTGCTGCTGCTCGCCGCCGGCC 477 consensus_15246#2 AGGCGGG-GCTCCTGTCG----GCGGCGGAGCG-CGCCGNGCTG----TCGCTGTCGGC- 79 consensus_15246#1 AC-CGGGCANCCCCGGCG---CGCTGCTCGGCGTCNCGCTGCTGCTGCTCGCCGCCGGCC 80 consensus_15246#3 GAGCGGCGGCGCCGCCGGTGAAGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGGCC 112 consensus_15246#4 GAGCTGCNGCNCCGGTNN-AGNGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGNCC 112 * * ** ** ** * * * **** * ** * consensus_15246#0 CCGCCGTCGTCTACCTCGTCCCGGAGGAGTACCCATGGGAGGTCGCCGTCCA-GGCCGTG 536 consensus_15246#2 ----------------------GGTGGAGCGGCT----GGGCCTGTTGTCCAAGGCCGTG 113 consensus_15246#1 CCGCCGTCGTCTACCTCGTCCCGGANGAGTACCCATGGGAGGTCGCCGTCCA-AGCCGTG 139 consensus_15246#3 CCGCCGTCGTCTACCTCGTCCCGGAGGAGTACCCATGGGAGGTCGCCGTCCA-GGCCGTG 171 consensus_15246#4 C-GCCTACGTCTACCTCGTCCCGGAG-AGTACCCATNGGAGGTCGCCGTCCA-GGC-GTG 168 ** ** * * * * ***** ** *** consensus_15246#0 GTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCC 596 consensus_15246#2 GTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCC 173 consensus_15246#1 GTCNCGCTCGCCTGCGTCNTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCC 199 consensus_15246#3 GTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCC 231 consensus_15246#4 GTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCC 228 *** ************** ***************************************** consensus_15246#0 AAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGAT 656 consensus_15246#2 AAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGAT 233 consensus_15246#1 AAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGAT 259 consensus_15246#3 AAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGAT 291 consensus_15246#4 AAGCTCCAGAGCTCGTCCAGCTGAA----------------------------------- 253 ************************* consensus_15246#0 TAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCA 716 consensus_15246#2 TAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCA 293 consensus_15246#1 TAATTATCACTTAATTTGCAATTAGTGTGTAATTAAGCAGANTATTTAGTGTGTATATCA 319 consensus_15246#3 TAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCA 351 consensus_15246#4 ------------------------------------------------------------ consensus_15246#0 ATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAA 776 consensus_15246#2 ATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAA 353 consensus_15246#1 ATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAA 379 consensus_15246#3 ATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAA 411 consensus_15246#4 ------------------------------------------------------------ consensus_15246#0 ATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTT 836 consensus_15246#2 ATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTT 413 consensus_15246#1 ATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTT 439 consensus_15246#3 ATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAAAAAAAAAAAAAA-------- 463 consensus_15246#4 ------------------------------------------------------------ consensus_15246#0 ACCTAGCTGATGTTGATTAGGATGTGACGTGCATACGTAT---GAGTATGTATAAAACAT 893 consensus_15246#2 ACCTAGCTGATGTTGATTAGGATGTGACGTGCATACGTAT---GAGTATGTATAAAACAT 470 consensus_15246#1 ACCTAACTGATGTTGATTAAGATNTGACNTGCATACGTATANTGAGTATGTATAAAACAT 499 consensus_15246#3 ------------------------------------------------------------ consensus_15246#4 ------------------------------------------------------------ consensus_15246#0 GCTATATTTATAAATTTTTTTCTCTAAAAAAAAAAAAAAAA 934 consensus_15246#2 GCTATATTTATAAAAAAA----------------------- 488 consensus_15246#1 GCNATATTTATAATTTNNNT--------------------- 519 consensus_15246#3 ----------------------------------------- consensus_15246#4 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||