These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 798 fasta sequence [CTCTCTCTCTCTACAGCGACGGCGGCGGCGGCGGCGAGGTGAGAGGAAGGAGAAGGGGATCGA-GGAGGAGGAGGCAAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG-AGCC-CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCAC-TTGCTAATGTTGTCGCAACGATTTCTCTTTG-TTTTGACTCCGGATGGGAAGCCTCTCTCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTAC-ATGT-GAT-CGGC---AA-AAT-AATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAA-TTAATGCTGCAATTTTCAGCTTTGAG-CTTGCAAAAAAAAGANGNNCGAGCGGGCGCGCCCCAAACAACACCCGAGCCGGCCCGGTGGCGCTAGCCGCTCATAGATCCATACTTTACGATAAGTGCAGTGCTTATTACATGTGACACGACAACTGTCCTACACCTAATCCTGCACCATCCATTGCCTGGCGTAATCAAGTTCACATTCGCCTTGATTCCAAAGGCGAAGATTCCATCAANATGACAGCTACTCATCACTTCTCACTCACTTCGACATACAAAAGTGCGCTCCTCCCATCACCTCGCGACTCCCATCACTCTCA] [+] EMBL CA752982 [CTCTCTCTCTCTACAGCGACGGCGGCGGCGGCGGCGAGGTGAGAGGAAGGAGAAGGGGATCGA GGAGGAGGAGGCAAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG AGCC CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCAC TTGCTAATGTTGTCGCAACGATTTCTCTTTG TTTTGACTCCGGATGGGAAGCCTCTCTCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTG AAACAGTACTAC ATGT GAT CCGCCAGAATAAT AATCGTGTCGTACCTGAACTTACCTTCACCATAATGAAA TAACTGCTGCAATNNTCAGCCTTGAGCCCTGCAAAAACAAGANGNNCGAGCGGGCGCGCCCCAAACAACACCCGAGCCGGCCCGGTGGCGCTAGCCGCTCATAGATCCATACTTTACGATAAGTGCAGTGCTTATTACATGTGACACGACAACTGTCCTACACCTAATCCTGCACCATCCATTGCCTGGCGTAATCAAGTTCACATTCGCCTTGATTCCAAAGGCGAAGATTCCATCAANATGACAGCTACTCATCACTTCTCACTCACTTCGACATACAAAAGTGCGCTCCTCCCATCACCTCGCGACTCCCATCACTCTCA] [+] EMBL AK120879 [ TCTCTCTACAGCGACGGCGGCGGCGGCGGCGAGGTGAGAGGAAGGAGAAGGGGATCGA GGAGGAGGAGGCGAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG AGCC CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCAC TTGCTAATGTTGTCGCAACGATTTCTCTTTG TTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTAC ATGT GAT CGGC AA AAT AATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAA TTAATGCTGCAATT ] [+] EMBL OS1451A [ GGCGGCGGCGGCGAGGTGAGAGGAAGGAGAAGGGGATCGA GGAGGAGGAGGCAAGCGCA NCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG AGCC CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTTACTTGGCATCTTTTCCACTTTGCTAATGTTGTCGCAACGATTTCTCTTTGTTTTTGACTCCGGATGGGAAGC ] [-] EMBL BI306742 [ CGGCGGCGGCGAGGTGAGAGGAAGGAGAAGGGGATCGA GGAGGAGGAGGCAAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG AGCC CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCAC TTGCTAATGTTGTCGCAACGATTTCTCTTTG TTTTGACTCCGGATGGGAAGCCTCTCTCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTAC ATGT GAT CGGC AA AAT AATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAA TTAATGCT ] [-] EMBL BI305918 [ GAAGGAGAAGGGGATCGA GGAGGAGGAGGCAAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG AGCC CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCAC TTGCTAATGTTGTCGCAACGATTTCTCTTTG TTTTGACTCCGGATGGGAAGCCTCTCTCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTAC ATGT GAT CGGC AA AAT AATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAA TTAATGCTGCAATTTTCAGCTTTGAG CTTGCAAGCAAAgcg ] [+] EMBL C27884 [ AGGAGAAGGGGATCGA GGAGGAGGAGGCAAGCGCAG CACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG AGCC CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCAC TTGCTAATGTTGTCGCAACGATTTCTCTTTG TTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTACAATGTGGATCCGGC AA AATAAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTTAATGCTG ] [+] EMBL AU161042 [ AAGGGGATCGAGGGAGGAGNAGGCAAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCNCGGTGAAGGAAGCCTCGTCGTCACCGCCTCATGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCNC TTGCTAATGTTGTCGCAACGATTTCTCTTTG TTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTAC ATGT GAT CGGC AA AAT AATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAA TTAATGCTGCAATTTTCAGCTTTGAG CTTGCAAAAAAAAaaaaaa ] [-] EMBL BI305773 [ GCAAGCGCACCCCCCATGGGAGTGATGGAGAAGCTCAAGATTTTCGCGGTGAAGG AGCC CGTTGTCCCCCCCTCCTGCCTTATCGCGGGATTGGGTTTTTTTTTTCCAGCAGTTGTCAGACCAATGTTGGATTTTTGGGAGACAGCAAAACAAGTTCCTCCCCCTGCGCTGAATAATGTTGTTGCAGGGGTCCCCGGCAAAAAAAAGGAGTGACTTGGCATTTTTTCCAC TTGCTAATGTTGTCGCAACGATTTTTTTTTG TTTTGACTCCGGATGGGAAGCCTTTTTCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCCCAGTGTGAAAACAGTACTAC ATGT GAT CGGC AA AAT AATCGTGTTGTCCCTGAACTTACTTTCAACAAAATGAAA TTAATGCTGCAATTTTCAGCTT ] consensusID : consensus_15247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [GGAGACAGGGGATCAGAGGAGAGAGGAGGCATAGCGCACGCCAACCATAGGGAGTGNATGGAGAAGCTCNAAGATCTTTCGCNGGTGAGAGGAGCACCGTCCGTCACACGCCTTCCTAGCCTCATGCGCCGCGATATCGGTCTTTTGTCGTTCACAGCGAGTGTGTCAGGACCACATGTTGCGATATCTTGTGGAGACCAGCTAAAACAATGTTTCCTACCACCGTGCGCGTGAATGGATGTGTGTTGTCAGCGCGTCACCCGGCAAAGTAAAAAAGGAGTGTACTGTGGCATCTTTTCCAGCATTGCTAAATGTTGATCGCACACGATTTCTCTTTCGTTTTGACGCCCGGTATGGGAAGCCTCTCATCAGTCCACGATGATTACGGATCATCNCATTCATATGTCCAGCATCAGTGTGAAAACAGTACTACATGTGATCGGCAAAATAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTAATGCTGCATTTTCAGCTTTGAGCTTGCAAGCAAAGCGT] [-] EMBL BU672928 [GGAGACAGGGGATCAGAGGAGAGAGGAGGCATAGCGCACGCCAACCATAGGGAGTGNATGGAGAAGCTCNAAGATCTTTCGCNGGTGAGAGGAGCACCGTCCGTCACACGCCTTCCTAGCCTCATGCGCCGCGATATCGGTCTTTTGTCGTTCACAGCGAGTGTGTCAGGACCACATGTTGCGATATCTTGTGGAGACCAGCTAAAACAATGTTTCCTACCACCGTGCGCGTGAATGGATGTGTGTTGTCAGCGCGTCACCCGGCAAAGTAAAAAAGGAGTGTACTGTGGCATCTTTTCCAGCATTGCTAAATGTTGATCGCACACGATTTCTCTTTCGTTTTGACGCCCGGTATGGGAAGCCTCTCATCAGTCCACGATGATTACGGATCATCNCATTCATATGTCCAGCATCAGTGTGAAAACAGTACTACATGTGATCGGCAAAATAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTAATGCTGCATTTTCAGCTTTGAGCTTGCAAGCAAAGCGT] consensusID : consensus_15247#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 502 fasta sequence [AGGGAAAGCGGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTCCTTGTGGGGCACCTATAAAGATGAGTGGATTACTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACATAGCCCTCGTGGCGATTTGATCAGTGTCTGATGTCGCAGACCTTAAAGACGTTGATCGTTGAGCTTACGCTGCGATGACATATGCTCAAAATTAATCAGAT] [+] EMBL AK063120 [AGGGAAAGCGGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTCCTTGTGGGGCACCTATAAAGATGAGTGGATTACTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACATAGCCCTCGTGGCGATTTGATCAGTGTCTGATGTCGCAGACCTTAAAGACGTTGATCGTTGAGCTTACGCTGCGATGACATATGCTCAAAATTAATCAGA ] [+] EMBL OSC19561 [ AAGCGGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTCCTTGTGGGGCACCTATAAAGATGAGTGGATTACTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTC ] [+] EMBL AU029459 [ TTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTC ] [-] EMBL BI305825 [ CGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTTTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTCCTTGTGGGGCACCTATAAAGATGAGTGGATTACTGATGTCAGTGTCGACACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACGTAGCCCTCGTGGCGATTTGATCAGTGTCTGATGTCGCAGACCTTAAAGACGTTGATCGTTGAGCTTACGCTGCGATGACATATGCTCAAAATTAATCAGAT] [-] EMBL CF298389 [ GTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTCCTTGTGGGGCACCTATAAAGATGAGTGGATTACTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGATTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAAAG TATTAAATGAAAACACACATAGCCCTCGTGGCGATTTGATCAGTGTCTGATGTCGCAGACCTTAAAGACGTTGATCGTTGAGCTTACGCTGCGATGACATATGCTCAAAATTAAT ] [+] EMBL AU101396 [ TTAANTCTCCTTGTGGGGCACCTATAAAGATGAGTGGATTNCTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGNCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAATGTTGAAAANTGNACACACACATAGCCCNCGTGGCGATTTGATCAGTGTCTGATGTCGCAGACCTTAAAGACGNTGAaaaanaaan ] consensusID : consensus_15247#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [GGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCACTTGCTAATGTTGTCGCAACGATTTCTCTTTGTTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTACATGTGATCGGCAAAATAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTAATGCTGCAATTTTCAGCTTTGAGCTTGCAAGCAAAGCGTGTGGATTGATTGGTAGCCTTAACCTATATCGTAAAATTGCTGGTGCCGATTGGTTCTGTGAAGATTTACACCAGCAGATTAGTTGTGGGCAACATTCTCTTGTGTGCAGCACTATCGTCAGTGGGCCACGCTTGCTTGAGCAAGCTGGTGAAGTCAGTACTGGGCTTGGGAAGCAAAGCCTTG] [+] EMBL C72453 [GGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCACTTGCTAATGTTGTCGCAACGATTTCTCTTTGTTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTACATGTGATCGGCAAAATAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTAATGCTGCAATTTTCAGCTTTGAGCTTGCAAGCAAAGCGTGTGGATTGATTGGTAGCCTTAACCTATATCGTAAAATTGCTGGTGCCGATTGGTTCTGTGAAGATTTACACCAGCAGATTAGTTGTGGGCAACATTCTCTTGTGTGCAGCACTATCGTCAGTGGGCCACGCTTGCTTGAGCAAGCTGGTGAAGTCAGTACTGGGCTTGGGAAGCAAAGCCTTG] consensusID : consensus_15247#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [GATGGAAAAGCTCAAATTTTTTCCGGTAAAGGAGCCCTTTGTCCCCCCCTCCTCCCTTATCGCGGGATTGGGTTTTTTTTTTCCACCAGTTGTCAACCCAATGTTGGATTTTTGGGAGACAGCAAAACAAGTTCCCCCCCCTGCGTTAAAAAATGTTGTTGCAGGGGTCCCCGGCAAAAAAAAGGAGTGACTTGGCATTTTTTCCCCTTGCAAAGGTTGTCGCAACGATTTTTTTTTGTTTTGACCCCGGAGGGGAACCCTTTTTCAGTCCAAATGATTGGGTTCCCCCCTTTAAATGTCCAGCCCAGGGTGAAAACAGTACTACATGTGTTGGGCAAAAAAATGGGGTTGGCCCTGAACTTCCTTTCCACAAAATGAAATT] [-] EMBL BI305875 [GATGGAAAAGCTCAAATTTTTTCCGGTAAAGGAGCCCTTTGTCCCCCCCTCCTCCCTTATCGCGGGATTGGGTTTTTTTTTTCCACCAGTTGTCAACCCAATGTTGGATTTTTGGGAGACAGCAAAACAAGTTCCCCCCCCTGCGTTAAAAAATGTTGTTGCAGGGGTCCCCGGCAAAAAAAAGGAGTGACTTGGCATTTTTTCCCCTTGCAAAGGTTGTCGCAACGATTTTTTTTTGTTTTGACCCCGGAGGGGAACCCTTTTTCAGTCCAAATGATTGGGTTCCCCCCTTTAAATGTCCAGCCCAGGGTGAAAACAGTACTACATGTGTTGGGCAAAAAAATGGGGTTGGCCCTGAACTTCCTTTCCACAAAATGAAATT] consensusID : consensus_15247#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [GAAAGCGGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATGTTTTGTATTCCATAAATAAGGCAGCAAGCAGAAAGACGATGAACCCTGTAGATTGCAGTTTTGCTCACACAGTCACAACGCTTGAAATTCTNCTCTCTTTCTATTTGGTAATGGCTCTTTTAAATTATCGGGATTNTAAGGTACCGTAAGAATTCNATTTCCCTTTTCTAC] [+] EMBL C27596 [GAAAGCGGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATGTTTTGTATTCCATAAATAAGGCAGCAAGCAGAAAGACGATGAACCCTGTAGATTGCAGTTTTGCTCACACAGTCACAACGCTTGAAATTCTNCTCTCTTTCTATTTGGTAATGGCTCTTTTAAATTATCGGGATTNTAAGGTACCGTAAGAATTCNATTTCCCTTTTCTAC] consensusID : consensus_15247#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [CCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCACTTGCTAATGTTGTCGCAACGATTTCTCTTTGTTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTACATGTGATCGGCAAAATAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTAATGCTGCAAAAAAAAAAAAAAAAAAA] [+] EMBL AU057702 [CCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCACTTGCTAATGTTGTCGCAACGATTTCTCTTTGTTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTACATGTGATCGGCAAAATAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTAATGCTGCAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15247#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [TGGGTTTATAGGTGCCCCACAAGGAGAATTAAAAAGATGAGTGGATTACTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACATAGCCCTCGTGGCGATTTGATCAAAAA] [+] EMBL AU077568 [TGGGTTTATAGGTGCCCCACAAGGAGAATTAAAAAGATGAGTGGATTACTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACATAGCCCTCGTGGCGATTTGATCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15247#3 ------------------------------------------------------------ consensus_15247#6 ------------------------------------------------------------ consensus_15247#1 ----------GGAGACAGGGGATCAGAGGAGAGAGGAGGCATAGCGCACGCCAACCATAG 50 consensus_15247#0 CTCTCTCTCTCTACAGCGACGGCGGCGGCGGCGGCGAGGTGAGAGGAAGGAGAAGGGGAT 60 consensus_15247#4 ------------------------------------------------------------ consensus_15247#2 ------------------------------------------------------------ consensus_15247#7 ------------------------------------------------------------ consensus_15247#5 ------------------------------------------------------------ consensus_15247#3 ------------------------------------------------------------ consensus_15247#6 ------------------------------------------------------------ consensus_15247#1 GGAGTGNATGGAGAAGCTCNAAGATCTTTCGCNGGTGAGAGGAGCACCGTCCGTCACACG 110 consensus_15247#0 CGAGGAGGAGGAGGCAAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGC 120 consensus_15247#4 ------------------------------------GATGGAAAAGCTCAAATTTTTTCC 24 consensus_15247#2 ---------------------------------------------------AGGGAAAGC 9 consensus_15247#7 ------------------------------------------------------------ consensus_15247#5 ------------------------------------------------------GAAAGC 6 consensus_15247#3 ------------------------------------------------------------ consensus_15247#6 ------------------------------------------------------------ consensus_15247#1 CCTTCCTAGCCTCATGCGCCGCGATATCGGTCTTTTGTCGTTCACAGCGAGTGTGTCAGG 170 consensus_15247#0 GGTGAAGGAGCCCGTCGTCACCGCCTCCTGCCTCATCGC---CGGATTCGGTCTTTTTCT 177 consensus_15247#4 GGTAAAGGAGCCCTTTGTCCCCCCCTCCTCCCTTATCGC---GGGATTGGGTTTTTTTTT 81 consensus_15247#2 GGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCG 69 consensus_15247#7 ------------------------------------------------------------ consensus_15247#5 GGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCG 66 consensus_15247#3 ------------------------------------------------------------ consensus_15247#6 ----------------------------------------------------------CC 2 consensus_15247#1 ACCACATGTTGCGATATCTTGTGGAGACCAGCTAAAACAATGTTTCCTACCACCGTGCGC 230 consensus_15247#0 TCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACC 237 consensus_15247#4 TCCACCAGTTGTCAACCCAATGTTGGATTTTTGGGAGACAGCAAAACAAGTTCCCCCCCC 141 consensus_15247#2 TGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTC 129 consensus_15247#7 ------------------------------------------------------------ consensus_15247#5 TGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTC 126 consensus_15247#3 ----------------------GGCGTCACC-GGCAAG---AAAAAGGAGTG-ACT-TGG 32 consensus_15247#6 TGCGCTGAATGATGTTGTTGCAGGCGTCACC-GGCAAG---AAAAAGGAGTG-ACT-TGG 56 consensus_15247#1 GTGAATGGATGTGTGTTGTCAGCGCGTCACCCGGCAAAGTAAAAAAGGAGTGTACTGTGG 290 consensus_15247#0 TGCGCTGAATGATGTTGTTGCAGGCGTCACC-GGCAAG---AAAAAGGAGTG-ACT-TGG 291 consensus_15247#4 TGCGTTAAAAAATGTTGTTGCAGGGGTCCCC-GGCAAA---AAAAAGGAGTG-ACT-TGG 195 consensus_15247#2 CAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCA 189 consensus_15247#7 ------------------------------------------------------------ consensus_15247#5 CAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCA 186 consensus_15247#3 CATCTTTTCCAC--TTGCTAA-TGTTG-TCGCA-ACGATTTCTCTTT-GTTTTGACTCCG 86 consensus_15247#6 CATCTTTTCCAC--TTGCTAA-TGTTG-TCGCA-ACGATTTCTCTTT-GTTTTGACTCCG 110 consensus_15247#1 CATCTTTTCCAGCATTGCTAAATGTTGATCGCACACGATTTCTCTTTCGTTTTGACGCCC 350 consensus_15247#0 CATCTTTTCCAC--TTGCTAA-TGTTG-TCGCA-ACGATTTCTCTTT-GTTTTGACTCCG 345 consensus_15247#4 CATTTTTTCCCC--TTGCAAA-GGTTG-TCGCA-ACGATTTTTTTTT-GTTTTGACCCCG 249 consensus_15247#2 ACTCTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTCCTTGTG 249 consensus_15247#7 --------------------------------------TGGGTTTATAGGTGCCCCACAA 22 consensus_15247#5 ACTCTCAGTGATGTTTT---------------------GTATTCCATAAATAAGGCAGCA 225 * * * consensus_15247#3 G--ATGGGAAGCCTCTC-CCAGTCCA-GATGATTA-GGATCATCC-ATTCATATGTCCAG 140 consensus_15247#6 G--ATGGGAAGCCTCTC-CCAGTCCA-GATGATTA-GGATCATCC-ATTCATATGTCCAG 164 consensus_15247#1 GGTATGGGAAGCCTCTCATCAGTCCACGATGATTACGGATCATCNCATTCATATGTCCAG 410 consensus_15247#0 G--ATGGGAAGCCTCTC-TCAGTCCA-GATGATTA-GGATCATCC-ATTCATATGTCCAG 399 consensus_15247#4 G--AGGGGAACCCTTTT-TCAGTCCA-AATGATTG-GGTTCCCCC-CTTTAAATGTCCAG 303 consensus_15247#2 GGGCACCTATAAAGATG---AGTGGA---TTACTGATGTCAGTGTCGAT-ACGTGGCAAC 302 consensus_15247#7 GGAGAATTAAAAAGATG---AGTGGA---TTACTGATGTCAGTGTCGAT-ACGTGGCAAC 75 consensus_15247#5 AGCAGA--AAGACGATG---AACC-----CTGTAGATTGCAGTTTTGCTCACACAGTCAC 275 * * * * * * consensus_15247#3 CA-CAGTGTGAAAACAGTACTA----CATGTGATCGGCAAAATAATCGTGTTGTACCTGA 195 consensus_15247#6 CA-CAGTGTGAAAACAGTACTA----CATGTGATCGGCAAAATAATCGTGTTGTACCTGA 219 consensus_15247#1 CATCAGTGTGAAAACAGTACTA----CATGTGATCGGCAAAATAATCGTGTTGTACCTGA 466 consensus_15247#0 CA-CAGTGTGAAAACAGTACTA----CATGTGATCGGCAAAATAATCGTGTTGTACCTGA 454 consensus_15247#4 CC-CAGGGTGAAAACAGTACTA----CATGTGTTGGGCAAAAAAATGGGGTTGGCCCTGA 358 consensus_15247#2 CT--TGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTG 360 consensus_15247#7 CT--TGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTG 133 consensus_15247#5 AA--CGCTTGAA-ATTCTNCT--CTCTTTCTATTTGGTAATGGCTCTTTTAAAT-TATCG 329 * **** * * ** * * ** * consensus_15247#3 ACTTACTTTCAACATAATGAAATTAATGCTGCAATTTTCAGCTTTGAGCTTGCAAGCAAA 255 consensus_15247#6 ACTTACTTTCAACATAATGAAATTAATGCTGCAAAAAAAAAAAAAAAAAAA--------- 270 consensus_15247#1 ACTTACTTTCAACATAATGAAATTAATGCTGCA-TTTTCAGCTTTGAGCTTGCAAGCAAA 525 consensus_15247#0 ACTTACTTTCAACATAATGAAATTAATGCTGCAATTTTCAGCTTTGAGCTTGCAAAAAAA 514 consensus_15247#4 ACTTCCTTTCCACAAAATGAAATT------------------------------------ 382 consensus_15247#2 TGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACATAGCCCTCGTGGCGATTTG 420 consensus_15247#7 TGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACATAGCCCTCGTGGCGATTTG 193 consensus_15247#5 GGATTNT---AAGGTACCGT----AAGAATTCNATTTCCCTTTTCTAC------------ 370 * * consensus_15247#3 G--CGTGTGGATTGATTGGTAGCCTTAACCTATATCGTAAAATTGCTGGTGCCGATTGGT 313 consensus_15247#6 ------------------------------------------------------------ consensus_15247#1 G--CGT------------------------------------------------------ 529 consensus_15247#0 AGANGNNCGAGCGGGCGCGCCCCAAACAACACCCGAGCCGGCCCGGTGGCGCTAGCCGCT 574 consensus_15247#4 ------------------------------------------------------------ consensus_15247#2 ATCAGTGTCTGATGTCGCAGACCTTAAAGACGTTGATCGTTGAGCTTACGCTGCGATGAC 480 consensus_15247#7 ATCAAAAA---------------------------------------------------- 201 consensus_15247#5 ------------------------------------------------------------ consensus_15247#3 TCTGTGAAGATTTACACCAGCAGATTAGTTGTGGGCAACAT-TCTCTTGTGTGCAGCACT 372 consensus_15247#6 ------------------------------------------------------------ consensus_15247#1 ------------------------------------------------------------ consensus_15247#0 CATAGATCCATACTTTACGATAAGTGCAGTGCTTATTACATGTGACACGACAACTGTCCT 634 consensus_15247#4 ------------------------------------------------------------ consensus_15247#2 ATATGCTCAAAATTAATCAGAT-------------------------------------- 502 consensus_15247#7 ------------------------------------------------------------ consensus_15247#5 ------------------------------------------------------------ consensus_15247#3 ATCGTCAGTGGGCCACGCTTGCTTGAGCAAGCTGGTGAAGTCAGTACTGGGCTTGGGAAG 432 consensus_15247#6 ------------------------------------------------------------ consensus_15247#1 ------------------------------------------------------------ consensus_15247#0 ACACCTAATCCTGCACCATCCATTGCCTGGCGTAATCAAGTTCACATTCGCCTTGATTCC 694 consensus_15247#4 ------------------------------------------------------------ consensus_15247#2 ------------------------------------------------------------ consensus_15247#7 ------------------------------------------------------------ consensus_15247#5 ------------------------------------------------------------ consensus_15247#3 CAAAGCCTTG-------------------------------------------------- 442 consensus_15247#6 ------------------------------------------------------------ consensus_15247#1 ------------------------------------------------------------ consensus_15247#0 AAAGGCGAAGATTCCATCAANATGACAGCTACTCATCACTTCTCACTCACTTCGACATAC 754 consensus_15247#4 ------------------------------------------------------------ consensus_15247#2 ------------------------------------------------------------ consensus_15247#7 ------------------------------------------------------------ consensus_15247#5 ------------------------------------------------------------ consensus_15247#3 -------------------------------------------- consensus_15247#6 -------------------------------------------- consensus_15247#1 -------------------------------------------- consensus_15247#0 AAAAGTGCGCTCCTCCCATCACCTCGCGACTCCCATCACTCTCA 798 consensus_15247#4 -------------------------------------------- consensus_15247#2 -------------------------------------------- consensus_15247#7 -------------------------------------------- consensus_15247#5 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||