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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1502 fasta sequence
[TCACCAAGTAAAAAGAGAAAAAGAACCCATAAATTTGAAGAATTTTAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGC-TCCAGAGCTTCGGCGGCC-TCCGCC-TCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCT-GCTGTT-CGCCGT-CAGGACGCTGTC-GTTCACGACGTCGT-CGGCGACGGCGACGGCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGCAGCAGACGGCGGCGGAGATCGGGGTGTCGCTGCGGGTGCTGCAGCTGCGGGCGCCGTGCAACTTCCTGGTGTTCGGCCTGGGCCTCGACAGCGCCATGTGGGCGGCGCTCAACCACGGCGGCCGCACCGTGTTCCTCGAGGAGGACGCGTCCTGGATCGCCTCCGTCAAAGCGGGCCACCCGGGGCTCGAGTCCTACCACGTCGCCTACGACACCCGCGTCACCGACGCCGATGAGCTCATCGCCCTCCGCCACGAGCCGGCCTGCACGTCCCAGCCGGACCTCGCCGCCGCCGCCGCCGCGTCGTGCCGCCTCGCCCTCCGCGGGCTCCCGCCGGTGTTCCACGAGGTGGAGTGGGACCTCATCATGGTGGACGCGCCGACGGGGTGGACGCCGGAGTCGCCGGGGAGGATGGGGGCGATCTACACCGCGGGCATGGCGGCGCGCGCCAGGACGCCCGGGGCGGGCGCCACCGAGGTGTTCGTCCACGACGTCGACCGCCACGTCGAGGACACCTTCTCCAAGGCGTTCCTCTGCGACGGCTACCTCGTCGAGCAGGTGGGGCGCATCCGCCGCTTCGTCATCCCCAGCCACCGCGACAAGGACGGCACGCCGTTCTGCCCTTGATGAGAGATGAGCTTCGCCTTCGCCTTCGCCGCGCACATGGACACCGTGATGACACCATTGCCATCGTCGTCTTCTTCATCTTCTTCATCTTCTTCTTCACATATGACACCACCATTGCTGCCGTCATCGTCTTCTTGAATTCACATGTCTTTTGTGATGATCAAGGATAAGTAGGATGATGAGTGCACCTTTGGGATCATGCACCAATGGAGGCGGTGGCGCGATGCGTGTGAG-CCGTCGGATCGAGAACGGACGGTTCGGATCGGACCG-TGGAGATATTGTTATTATATATAGTTTC-TTTTTTTTTTCAAATGCAGCTTTTTCTTTGTTGTTTTTTTTATGGACGGTGGGTGAGATGGATATGCA-GGCGAATTATAATTCTTGGCTATTTTTCATAGATTATCG-TTGTGTTTCTTTTTAATTCATAATTGAGATATCATCTTCAGTGGGTGACTGATGAGTGGTGCCATTTGAGATTCCTATCTACTGAAGCAATAATGCTAAG]
[+] EMBL AK069867 [TCACCAAGTAAAAAGAGAAAAAGAACCCATAAATTTGAAGAATTTTAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGC TCCAGAGCTTCGGCGGCC TCCGCC TCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCT GCTGTT CGCCGT CAGGACGCTGTC GTTCACGACGTCGT CGGCGACGGCGACGGCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGCAGCAGACGGCGGCGGAGATCGGGGTGTCGCTGCGGGTGCTGCAGCTGCGGGCGCCGTGCAACTTCCTGGTGTTCGGCCTGGGCCTCGACAGCGCCATGTGGGCGGCGCTCAACCACGGCGGCCGCACCGTGTTCCTCGAGGAGGACGCGTCCTGGATCGCCTCCGTCAAAGCGGGCCACCCGGGGCTCGAGTCCTACCACGTCGCCTACGACACCCGCGTCACCGACGCCGATGAGCTCATCGCCCTCCGCCACGAGCCGGCCTGCACGTCCCAGCCGGACCTCGCCGCCGCCGCCGCCGCGTCGTGCCGCCTCGCCCTCCGCGGGCTCCCGCCGGTGTTCCACGAGGTGGAGTGGGACCTCATCATGGTGGACGCGCCGACGGGGTGGACGCCGGAGTCGCCGGGGAGGATGGGGGCGATCTACACCGCGGGCATGGCGGCGCGCGCCAGGACGCCCGGGGCGGGCGCCACCGAGGTGTTCGTCCACGACGTCGACCGCCACGTCGAGGACACCTTCTCCAAGGCGTTCCTCTGCGACGGCTACCTCGTCGAGCAGGTGGGGCGCATCCGCCGCTTCGTCATCCCCAGCCACCGCGACAAGGACGGCACGCCGTTCTGCCCTTGATGAGAGATGAGCTTCGCCTTCGCCTTCGCCGCGCACATGGACACCGTGATGACACCATTGCCATCGTCGTCTTCTTCATCTTCTTCATCTTCTTCTTCACATATGACACCACCATTGCTGCCGTCATCGTCTTCTTGAATTCACATGTCTTTTGTGATGATCAAGGATAAGTAGGATGATGAGTGCACCTTTGGGATCATGCACCAATGGAGGCGGTGGCGCGATGCGTGTGAG CCGTCGGATCGAGAACGGACGGTTCGGATCGGACCG TGGAGATATTGTTATTATATATAGTTTC TTTTTTTTTTCAAATGCAGCTTTTTCTTTGTTGTTTTTTTTATGGACGGTGGGTGAGATGGATATGCA GGCGAATTATAATTCTTGGCTATTTTTCATAGATTATCG TTGTGTTTCTTTTTAATTCATAATTGAGATATCATCTTCAGTGGGTGACTGATGAGTGGTGCCATTTGAGATTCCTATCTACTGAAGCAATAATGCTAAG]
[-] EMBL BU673581 [ CCAAGTAAAAAGAGAAAAAGAACCCATAAATTTGAAGAATTTTAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGC TCCAGAGCTTCGGCGGCC TCCGCC TCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCT GCTGTT CGCCGT CAGGACGCTGTC GTTCACGACGTCGT CGGCGACGGCGACGGCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGCAGCAGACGGCGGCGGAGATCGGGGTGTCGCTGCGGGTGCTGCAGCTGCGGGCGCCGTGCAACTTCCTGGTGTTCGGCCTGGGCCTCGACAGCGCCATGTGGGCGGCGCTCAACCAC GC GCCGCAagct ]
[-] EMBL BU673111 [ CCAAGTAAAAAGAGAAAAAGAACCCATAAATTTGAAGAATTTTAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGCGTCCAGAGCTTCGGCGGCCGTCCGCCGTCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCT GCTGTT CGCCGT CAGGACGCTGTCGGTTCACGACGTCGT CGGCGACGGCGACGGCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGCAGCAGACGGCGGCGGAGATCGGGGTGTCGCTGCGGGTGCTGCAGCTGCGGGCGCCGTGCAACTTCCTGGTGTTCGGCCTGGGCCTCGACAGCGCCATGTGGGCGGCGC ]
[+] EMBL AU163652 [ AAAAGAGAAAAAGAACCCATAAATTTNAAGAATTTTAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGC TCCAGAGCTTCGGCGGCC TCCGCC TCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCT GCTGTT CGCCGT CA GACGCTGTC GTTCACGACGTCGT GGCGACGGCGACGGCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGNGAAG TTCCGGCTGCGGTNGCGCAGCCAAT ]
[+] EMBL AU094884 [ AAAAGAGAAAAAGAACCCATAAATTTGAAGAATTTTAGCTTCATTCAAGAACTCGATCNAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGC TCCAGAGCTTCGGCGGCC TCCGCC TCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCT GCTGTT CGCCGT CAGGACGCTGTC GTTCACGACGTCGT CGGCGACGGCGACGGCGGCGAGGGA ]
[-] EMBL CB964618 [ ggatttAGTACCCATAAATTTGAAGAATTTTAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGTGCGCCATGTCGAGCCCCATGCAGGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGC TCCAGAGCTTCGGCGGCC TCCGCC TCTGCCTCGTCGGCTGCCTCGCCGCGCTGCTGCTGGCTGTTGCGCCGTGCAGGACGCTGTC GTTCACGACGTCGTGCGGCGACGGCGACGGCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGCAGCAGACGGCGGCGGAGATCGGGGTGTCGCTGCGGGTGCTGCAGCTGCGGGCGCCGTGCAACTTCCTGG GTTCGGCCTGGGCCTCGACA CGCCATGT GGCGGCGCT ]
[+] EMBL BP184735 [ ACCCATAAATTTGAAGAATTTTAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGC TCCAGAGCTTCGGCGGCC TCCGCC TCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCT GCTGTT CGCCGT CAGGACGCTGTC GTTCACGACGTCGT CGGCGACGGCGACGGCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGCAGCAGACGGCGGCGGAGATCGGGGTGTCGCTGCGGGTGCTGCAGCTGCGGGCGCCGTGCAACTTCCTGGTGTTCGGCCTGGGCCTCGACAGCGCCATGTGGG ]
[+] EMBL AU070112 [ ACCCATAAATTTGAAGAATTTTAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGC TCCAGAGCTTCGGCGGCC TCCG C TCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCT GCTGTT CGCCGT CA GACGCTGTC GTTCACGACGTCGT GGCGA GGCGACGGCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGGGAAG TCCCGGCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGNAGAAGACGGC GCGGAGATCGGGGTGT ]
[+] EMBL CB669551 [ CCCATAAATCTTAAGAATTTTAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGC TCCATAGCTTCGGCGGCC TCCGCC TCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCT GCTGTT CGCCGT CAGGACGCTGTC GTTCACTACGTCAT CAGCGACAGCGACGGCGGCGAGGGAGGCTGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGCAGCAGACGGCGGCGGACATCGGGGTGTCGCTGCGGGTGCTGCAGCTGCGGGCGCCGTGCAACTTCCTGGTGTTCGGCCTGGGCCTCCACAGCGCCATGTGGGCGGCGCTCAACCACGGCGGCCGCACCGTGTTCCTCGAGGAGGACGCGTCCTGGATCGCCTCCGTCAAGGCGGGCCACCCGGGGCTCGAGTCCTACCACGTCGCCTACGACACCCGCGTCACCGACGCCGATGAGCTCATCGCCCTCCGCCACGAGCCGGCCTGCACGTCCCAGCCGGACCTCACCGCCGCCGCCGCCGCGTCGTGCCGCCTCGCCCTCAGCGGGCTCCCGCCGGTGTTCCACGACGTGGAGTGGGACCTCA ]
[-] EMBL CB966602 [ CCATAAATTTGAAGAATTTTAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGC TCCAGAGCTTCGGCGGCC TCCGCC TCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCT GCTGTT CGCCGT CAGGACGCTGTC GTTCACGACGTCGT CGGCGACGGCGACGGCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGCAGCAGACGGCGGCGGAGATCGGGGTGTCGCTGCGGGTGCTGCAGCTGCGGGCGCCGTGCAACTTCCTGGTGTTCGGCCTGGGCCTCGACAGCGCCATGT GGCGGCGCTCAACCAC GC ACCGCAagctatt ]
[+] EMBL AU101240 [ CGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGC TCCAGAGCTTCGGCGGCC TCCGCC TCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCT GCTGTT CGCCGT CAGGACGCTGTC GTTCACGACGTCGT CGGCGACGGCGACGGCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGCAGCAGACGGCGGCGGAGATCGGGGTGTCGCTGCGGGTGCTGCAGCTGCGGGCGCCGTGCAACTTCCTGGTGTTCGGCCTGGGCCTCGACAGCGCCATGTGGGCGGC ]
[-] EMBL BU672837 [ AGATCGGGGTGTCGCTGCGGGTGCTGCAGCTGCGGGCGCCGTGCAACTTCCTGGTGTTCGGCCTGGGCCTCGACAGCGCCATGTGGGCGGCGCTC ]
[+] EMBL CB684393 [ CCTTGATGAGAGATGAGCTTCGCCTTCGCCTTCGCCGCGCACATGGACACCGTGATGACACCATTGCCATCGTCGTCTTCTTCATCTTCTTCATCTTCTTCTTCACATATGACACCACCATTGCTGCCGTCATCGTCTTCTTGAATTCACATGTCTTTTGTGATGATCAAGGATAAGTAGGATGATGAGTGCACCTTTGGGATCATGCACCAATGGAGGCGGTGGCGCGATGCGTGTGAG CCGTCGGATCGAGAACGGACGGTTCGGATCGGACCG TGGAGATATTGTTATTATATATAGTTTC TTTTTTTTTTCAAATGCAGCTTTTTCTTTGTTGTTTTTTTTATGGACGGTGGGTGAGATGGATATGCA GGCGAA ]
[+] EMBL AU172659 [ TTGATGAGAGATGAGCTTCGCCTTCGCCTTCGCCGCGCACATGGACACCGTGATGACACCATTGCCATCGTCGTCTTCTTCATCTTCTTCATCTTCTTCTTCACATATGACACCACCATTGCTGCCGTCATCGTCTTCTTGAATTCACATGTCTTTTGTGATGATCAAGGATAAGTAGGATGATGAGTGCACCTTTGGGATCATGCACCAATGGAGGCGGTGGCGCGATGCGTGTGAGCCCGTCGGATCGAGAACGGACGGTTCGGATCGGACCG TGGAGATATTGTTATTATATATAGTTTC TTTTTTTTTTCAAATGCAGCTTTTTCTTTGTTGTTTTTTTTATGGACGGTGGGTGAGATGGATATGCA GGCGAATTATAATTCTTGGCTATTTTTCATAGATTATCG TTGTGTTTCTTTTTAATTCAAAAa ]
[+] EMBL AU165411 [ TGGACACCGTGATGACACCATTGCCATCGTCGTCTTCTTCATCTTCTTCATCTTCTTCTTCACATATGACACCACCATTGCTGCCGTCATCGTCTTCTTGAATTCACATGTCTTTTGTGATGATCAAGGATAAGTAGGATGATGAGTGCACCTTTGGGATCATGCACCAATGGAGGCGGTGGCGCGATGCGTGTGAG CCGTCGGATCGAGAACGGACGGTTCGGATCGGACCG TGGAGATATTGTTATTATATATAGTTTC TTTTTTTTTTCAAATGCAGCTTTTTCTTTGTTGTTTTTTTTATGGACGGTGGGTGAGATGGATATGCA GGCGAATTATAATTCTTGGCTAaaaaaaaa ]
[+] EMBL BI800051 [ GGGTCGAGAACGGACGGTTCGGATCGGACCGCTGGAGATATTGTTATTATATATAGTTTCTTTTTTTTTTTCAAATGCAGCTTTTTCTTTGTTGTTTTTTTTATGGACGGTGGGTGAGATGGATATGCACGGCGAATTATAATTCTTGGCTATTTTTCATAGATTATCGCTTGTGTTTCTTTTTAATTCATAATTGAGATATCATCTTCCGTGGGTGAaaaaaaaaa ]
consensusID : consensus_15253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence
[CGCCGNGTTGTGCCGCCTCGCCCTCCGCGGGCTCCCGCCGGTGTTCCACGAGGTGGAGTGGGACCTCATCATGGTGGACGCGCCGACGGGGTGGACGCCGGAGTCGCCGGGGAGGATGGGGGCGATCTACACCGCGGGCATGGCGGCGCGCGCCAGGACGCCCGGGGCGGGCGCCACCGAGGTGTTCGTCCACGACGTCGACCGCCACGTCGAGGACACCTTCTCCAAGGCGTTCCTCTGCGACGGCTACCTCGTCGAGCAGGTGGGGCGCATCCGCCGCTTCGTCATCCCCAGCCACCGCGACAAGGACGGCACGCCGTTCTGCCCTTGATGAGAGATGAGCTTCGCCTTCGCCTTCGCCGCGCACATGGACACCGTGATGACACCATTGCCATCGTCGTCTTCTTCATCTTCTTCATCTTCTTCTTCACATATGACACCACCATTGCTGCCGTCATCGTCTTCTTGAATTCACATGTCTTTTGTGATGATCAAGGATAAGTAGGATGATGAGTGCACCTTTGGGATCATGCACCAATGGAGGCGGTGGCGCGATGCGTGTGAGCCGTCGGATCGAGAACGGACGGTTCGGATCGGACCGTGGAGATATTGTTATTATATATAGTTTCTTTTTTTTTCAAATGCAGCTTTTTCTTTGTTGTTTTTTTTATGGACGGTGGGTGAGATGGATATGCAGGCGAATTATAATTCTTGGCTATTTTTCATAAAAAAAAAAGA]
[-] EMBL CB669552 [CGCCGNGTTGTGCCGCCTCGCCCTCCGCGGGCTCCCGCCGGTGTTCCACGAGGTGGAGTGGGACCTCATCATGGTGGACGCGCCGACGGGGTGGACGCCGGAGTCGCCGGGGAGGATGGGGGCGATCTACACCGCGGGCATGGCGGCGCGCGCCAGGACGCCCGGGGCGGGCGCCACCGAGGTGTTCGTCCACGACGTCGACCGCCACGTCGAGGACACCTTCTCCAAGGCGTTCCTCTGCGACGGCTACCTCGTCGAGCAGGTGGGGCGCATCCGCCGCTTCGTCATCCCCAGCCACCGCGACAAGGACGGCACGCCGTTCTGCCCTTGATGAGAGATGAGCTTCGCCTTCGCCTTCGCCGCGCACATGGACACCGTGATGACACCATTGCCATCGTCGTCTTCTTCATCTTCTTCATCTTCTTCTTCACATATGACACCACCATTGCTGCCGTCATCGTCTTCTTGAATTCACATGTCTTTTGTGATGATCAAGGATAAGTAGGATGATGAGTGCACCTTTGGGATCATGCACCAATGGAGGCGGTGGCGCGATGCGTGTGAGCCGTCGGATCGAGAACGGACGGTTCGGATCGGACCGTGGAGATATTGTTATTATATATAGTTTCTTTTTTTTTCAAATGCAGCTTTTTCTTTGTTGTTTTTTTTATGGACGGTGGGTGAGATGGATATGCAGGCGAATTATAATTCTTGGCTATTTTTCATAAAAAAAAAAGA]
consensusID : consensus_15253#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[CCATAAATGGGAAGAATTTTAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGCTCCAGAGCTTCGGCGGCCTCCGCCTCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCTGCTGTTCGCCGTCAGGACGCTGTCGTTCACGACGTCGTCGGCGACGGCGACGCCGGCGAGGGAGACGCCGGAGGCGGGCTGCGGGAAGCTCCCGCCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGCAGCAGACGCGGCGGAGATCGGGGTGTCGCTGCGGGTGCAGCAGCTGCGGGCCCGTGCAACTTCCTGTGTTCGCCTGGCCTCGACAGCGCCATGTGGCGCGCTCAACCACGCGAAGCAAGGATTCCC]
[-] EMBL BU673502 [CCATAAATGGGAAGAATTTTAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGCTCCAGAGCTTCGGCGGCCTCCGCCTCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCTGCTGTTCGCCGTCAGGACGCTGTCGTTCACGACGTCGTCGGCGACGGCGACGCCGGCGAGGGAGACGCCGGAGGCGGGCTGCGGGAAGCTCCCGCCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGCAGCAGACGCGGCGGAGATCGGGGTGTCGCTGCGGGTGCAGCAGCTGCGGGCCCGTGCAACTTCCTGTGTTCGCCTGGCCTCGACAGCGCCATGTGGCGCGCTCAACCACGCGAAGCAAGGATTCCC]
consensusID : consensus_15253#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[AGCTTCATTCTAGACTTCGATCGACGGAGGCCAATGTAAGGTGTGAGACCTTTTATTTGGGTGCTGCCATGGTCGAGCCCCATGCACGTTGCCGCAAGCCGATCCACTGTCCGTGTCCATCAAGCGCCAAGCGCCAGAGCCCCGCCGCCCCCCAGCCTGCCTGCCGCGTGCGCGCTGCCTGCAGCCGCGCGGCTGGCGGCTGTGCGCCGGCAGGACGCTGTGCGTGCACGACGTGCGTGCGGCGACGGCGACGGCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGCAGCAGACGGCGGCGGAGATCGGGGTGTCGCTGCGGGTGCTGCAGCTGCGGGCGCCGTGCAACTTCCTGGTGTTCAGGCCTGGGCCTCGACAGCGCCATGTGGGCGGCGCTCAACCA]
[-] EMBL CB964753 [AGCTTCATTCTAGACTTCGATCGACGGAGGCCAATGTAAGGTGTGAGACCTTTTATTTGGGTGCTGCCATGGTCGAGCCCCATGCACGTTGCCGCAAGCCGATCCACTGTCCGTGTCCATCAAGCGCCAAGCGCCAGAGCCCCGCCGCCCCCCAGCCTGCCTGCCGCGTGCGCGCTGCCTGCAGCCGCGCGGCTGGCGGCTGTGCGCCGGCAGGACGCTGTGCGTGCACGACGTGCGTGCGGCGACGGCGACGGCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCGATGGTGCACTACGCGACGGCGAACGTGACGCCGCAGCAGACGGCGGCGGAGATCGGGGTGTCGCTGCGGGTGCTGCAGCTGCGGGCGCCGTGCAACTTCCTGGTGTTCAGGCCTGGGCCTCGACAGCGCCATGTGGGCGGCGCTCAACCA]
consensusID : consensus_15253#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence
[ACCCATAAATTTAAAGAATTTNAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGCTCCAGAGCTTCGGCGGCCTCCGNCTCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCTGCTGTTCGCCGTCAGGACGCTGTCGTTCACGACGTCGTCGGCGACGGCNACGGCGGCGAGGNAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCAATGGTGCACTACGCGACGGCGAACGTAACGCCGCAGCANACGGCGGCGGAGATCGGGGTGTCGTTCGGGTTCTTCACTTCGGGCGCCGTGAAATTCCTGGTGTTCGGCTTGGNCACCAGGTT]
[+] EMBL AU163650 [ACCCATAAATTTAAAGAATTTNAGCTTCATTCAAGAACTCGATCGAGGAGGGCCAAGAAAGGTGTGAGACCTTGATTTGGTCGCCATGTCGAGCCCCATGCATGTTCGCAAGGCGATCCACTTCGTCTCCATGAAGGCCAAGCTCCAGAGCTTCGGCGGCCTCCGNCTCCTCCTCGTCGGCTGCCTCGCCGCGCTGCTGCTGCTGTTCGCCGTCAGGACGCTGTCGTTCACGACGTCGTCGGCGACGGCNACGGCGGCGAGGNAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCAATGGTGCACTACGCGACGGCGAACGTAACGCCGCAGCANACGGCGGCGGAGATCGGGGTGTCGTTCGGGTTCTTCACTTCGGGCGCCGTGAAATTCCTGGTGTTCGGCTTGGNCACCAGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15253#2 --------------------------CCATAAATGGGAAGAATTTTAGCTTCATTCAAGA 34
consensus_15253#3 ----------------------------------------------AGCTTCATTCTAGA 14
consensus_15253#4 ------------------------ACCCATAAATTTAAAGAATTTNAGCTTCATTCAAGA 36
consensus_15253#0 TCACCAAGTAAAAAGAGAAAAAGAACCCATAAATTTGAAGAATTTTAGCTTCATTCAAGA 60
consensus_15253#1 ------------------------------CGCCGNGTTGTGCCGCCTCGCCCTCCGCGG 30
* * * * *
consensus_15253#2 ACTCGATCGAGGAGGGCCAA-GAAA-GGTGTGAGACCTTG-ATTTGG---TCGCCATG-T 87
consensus_15253#3 CTTCGATCGACGGAGGCCAATGTAA-GGTGTGAGACCTTTTATTTGGGTGCTGCCATGGT 73
consensus_15253#4 ACTCGATCGAGGAGGGCCAA-GAAA-GGTGTGAGACCTTG-ATTTGG---TCGCCATG-T 89
consensus_15253#0 ACTCGATCGAGGAGGGCCAA-GAAA-GGTGTGAGACCTTG-ATTTGG---TCGCCATG-T 113
consensus_15253#1 GCTC--CCGCCGGTGTTCCACGAGGTGGAGTGGGACCTCA-TCATGGTGGACGCGCCG-A 86
** ** * * * * * ** *** ***** *** ** *
consensus_15253#2 CGAGCCCCATGCATGTT--CGCAAGGCGATCCACT--TCGTCTCCATGAAG-GCCAAGCT 142
consensus_15253#3 CGAGCCCCATGCACGTTGCCGCAAGCCGATCCACTGTCCGTGTCCATCAAGCGCCAAGCG 133
consensus_15253#4 CGAGCCCCATGCATGTT--CGCAAGGCGATCCACT--TCGTCTCCATGAAG-GCCAAGCT 144
consensus_15253#0 CGAGCCCCATGCATGTT--CGCAAGGCGATCCACT--TCGTCTCCATGAAG-GCCAAGCT 168
consensus_15253#1 CGGGGTGGACGC-CGGAGTCGCCGGGGAGGATGGGGGCGATCTACACCGCGGGCATGGCG 145
** * * ** * *** * * * ** * ** **
consensus_15253#2 CCAGAGCTTCGGCGGCCTCC-----GCCTCCTCCTCGTCGGCTGCCTC--GCCGCGCTGC 195
consensus_15253#3 CCAGAGCCCCGCCGCCCCCCAGCCTGCCTGCCGCGTGCGCGCTGCCTGCAGCCGCGCGGC 193
consensus_15253#4 CCAGAGCTTCGGCGGCCTCC-----GNCTCCTCCTCGTCGGCTGCCTC--GCCGCGCTGC 197
consensus_15253#0 CCAGAGCTTCGGCGGCCTCC-----GCCTCCTCCTCGTCGGCTGCCTC--GCCGCGCTGC 221
consensus_15253#1 GC-GCGCGCCAGGACGCCCGG----GGCGGGCGCCACCGAGGTGTTCG--TCCACGACGT 198
* * ** * * * * * * * ** ** ** *
consensus_15253#2 TG-CTGCTGTTCGCCGTCAGGACGCTGT-CGTTCACGACGT-CGT-CGGCGACGGCGACG 251
consensus_15253#3 TGGCGGCTGTGCGCCGGCAGGACGCTGTGCGTGCACGACGTGCGTGCGGCGACGGCGACG 253
consensus_15253#4 TG-CTGCTGTTCGCCGTCAGGACGCTGT-CGTTCACGACGT-CGT-CGGCGACGGCNACG 253
consensus_15253#0 TG-CTGCTGTTCGCCGTCAGGACGCTGT-CGTTCACGACGT-CGT-CGGCGACGGCGACG 277
consensus_15253#1 CGACCGCCA--CGTCG--AGGACACCTT--CTCCAAGGCGTTCCT-CTGCGACGGCTACC 251
* * ** ** ** ***** * * * ** * *** * * * ******** **
consensus_15253#2 CCGGCGAGGGAGACGCCGGAGGCGGGCTGCGGGAAGCTCCCGCCGGCGGTGGCGCAGGCG 311
consensus_15253#3 GCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCG 313
consensus_15253#4 GCGGCGAGGNAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCA 313
consensus_15253#0 GCGGCGAGGGAGGCGGCGGAGGCGGGCTGCGGGAAGCTCCCGGCGGCGGTGGCGCAGGCG 337
consensus_15253#1 TCGTCGAGCAGGTGGGGCGCATCCGCCGCTTCGTCATCCCCAGCCACCGCGACAAGGACG 311
** **** * * * * * * * *** * * * * * * *
consensus_15253#2 --ATGGTGCACTACGC--GACGGCGAACGTGACGCCGCAGCAGACG-CGGCGGAGATCGG 366
consensus_15253#3 --ATGGTGCACTACGC--GACGGCGAACGTGACGCCGCAGCAGACGGCGGCGGAGATCGG 369
consensus_15253#4 --ATGGTGCACTACGC--GACGGCGAACGTAACGCCGCAGCANACGGCGGCGGAGATCGG 369
consensus_15253#0 --ATGGTGCACTACGC--GACGGCGAACGTGACGCCGCAGCAGACGGCGGCGGAGATCGG 393
consensus_15253#1 GCACGCCGTTCTGCCCTTGATGAGAGATG-AGCTTCGCCTTCGCCTTCGCCGCGCACATG 370
* * * ** * * ** * * * * *** * ** ** * *
consensus_15253#2 GGTGTCGCTGCGGGTGCAGCAGCTGCGG-GC-CCGTGCAACTTCCTG-TGTTC--GCCTG 421
consensus_15253#3 GGTGTCGCTGCGGGTGCTGCAGCTGCGG-GCGCCGTGCAACTTCCTGGTGTTCAGGCCTG 428
consensus_15253#4 GGTGTCGTT-CGGGTTCTTCA-CTTCGG-GCGCCGTG-AAATTCCTGGTGTTC-GGCTTG 424
consensus_15253#0 GGTGTCGCTGCGGGTGCTGCAGCTGCGG-GCGCCGTGCAACTTCCTGGTGTTC-GGCCTG 451
consensus_15253#1 GACACCGTGATGACACCATTGCCATCGTCGTCTTCTTCATCTTCTTCATCTTC-TTCTTC 429
* ** * * * ** * * * *** * * *** * *
consensus_15253#2 G-CCTCGACAGCGCCATGTGGC--GCGCTCAACCACGCGAAGCAAGGATTCCC------- 471
consensus_15253#3 GGCCTCGACAGCGCCATGTGGGCGGCGCTCAACCA------------------------- 463
consensus_15253#4 G---NCACCAGGTT---------------------------------------------- 435
consensus_15253#0 GGCCTCGACAGCGCCATGTGGGCGGCGCTCAACCACGGCGGCCGCACCGTGTTCCTCGAG 511
consensus_15253#1 ACATATGACACCACCATTGCTGCCGTCATCGTCTTCTTGAATTCACATGTCTTTTGTGAT 489
**
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 GAGGACGCGTCCTGGATCGCCTCCGTCAAAGCGGGCCACCCGGGGCTCGAGTCCTACCAC 571
consensus_15253#1 GATCAAGGATAAGTAGGATGATGAGTGCACCTTTGGGATCATGCACCAATGGAGGCGGTG 549
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 GTCGCCTACGACACCCGCGTCACCGACGCCGATGAGCTCATCGCCCTCCGCCACGAGCCG 631
consensus_15253#1 GCGCGATGCGTGTGAGCCGTCGGATCGAGAACGGACGGTTCGGATCGGACCGTGGAGATA 609
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 GCCTGCACGTCCCAGCCGGACCTCGCCGCCGCCGCCGCCGCGTCGTGCCGCCTCGCCCTC 691
consensus_15253#1 TTGTTATTATATATAGTTTCTTTTTTTTTCAAATGCAGCTTTTTCTTTGTTGTTTTTTTT 669
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 CGCGGGCTCCCGCCGGTGTTCCACGAGGTGGAGTGGGACCTCATCATGGTGGACGCGCCG 751
consensus_15253#1 ATGGACGGTGGGTGAGATGGATATGCAGGCGAATTATAATTCTTGGCTATTTTTCATAAA 729
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 ACGGGGTGGACGCCGGAGTCGCCGGGGAGGATGGGGGCGATCTACACCGCGGGCATGGCG 811
consensus_15253#1 AAAAAAAGA--------------------------------------------------- 738
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 GCGCGCGCCAGGACGCCCGGGGCGGGCGCCACCGAGGTGTTCGTCCACGACGTCGACCGC 871
consensus_15253#1 ------------------------------------------------------------
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 CACGTCGAGGACACCTTCTCCAAGGCGTTCCTCTGCGACGGCTACCTCGTCGAGCAGGTG 931
consensus_15253#1 ------------------------------------------------------------
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 GGGCGCATCCGCCGCTTCGTCATCCCCAGCCACCGCGACAAGGACGGCACGCCGTTCTGC 991
consensus_15253#1 ------------------------------------------------------------
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 CCTTGATGAGAGATGAGCTTCGCCTTCGCCTTCGCCGCGCACATGGACACCGTGATGACA 1051
consensus_15253#1 ------------------------------------------------------------
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 CCATTGCCATCGTCGTCTTCTTCATCTTCTTCATCTTCTTCTTCACATATGACACCACCA 1111
consensus_15253#1 ------------------------------------------------------------
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 TTGCTGCCGTCATCGTCTTCTTGAATTCACATGTCTTTTGTGATGATCAAGGATAAGTAG 1171
consensus_15253#1 ------------------------------------------------------------
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 GATGATGAGTGCACCTTTGGGATCATGCACCAATGGAGGCGGTGGCGCGATGCGTGTGAG 1231
consensus_15253#1 ------------------------------------------------------------
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 CCGTCGGATCGAGAACGGACGGTTCGGATCGGACCGTGGAGATATTGTTATTATATATAG 1291
consensus_15253#1 ------------------------------------------------------------
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 TTTCTTTTTTTTTTCAAATGCAGCTTTTTCTTTGTTGTTTTTTTTATGGACGGTGGGTGA 1351
consensus_15253#1 ------------------------------------------------------------
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 GATGGATATGCAGGCGAATTATAATTCTTGGCTATTTTTCATAGATTATCGTTGTGTTTC 1411
consensus_15253#1 ------------------------------------------------------------
consensus_15253#2 ------------------------------------------------------------
consensus_15253#3 ------------------------------------------------------------
consensus_15253#4 ------------------------------------------------------------
consensus_15253#0 TTTTTAATTCATAATTGAGATATCATCTTCAGTGGGTGACTGATGAGTGGTGCCATTTGA 1471
consensus_15253#1 ------------------------------------------------------------
consensus_15253#2 -------------------------------
consensus_15253#3 -------------------------------
consensus_15253#4 -------------------------------
consensus_15253#0 GATTCCTATCTACTGAAGCAATAATGCTAAG 1502
consensus_15253#1 -------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||